RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 PARP11Q9NR21 331 aa14.64□□□□□ -0.07
CCDC88B-206ENST00000473405 STEAP1Q9UHE8 339 aa14.64□□□□□ -0.07
CCDC88B-206ENST00000473405 WSB1Q9Y6I7 421 aa14.64□□□□□ -0.07
CCDC88B-206ENST00000473405 DNAH7Q8WXX0 4024 aa14.63□□□□□ -0.07
CCDC88B-206ENST00000473405 FOXI3A8MTJ6 420 aaPredicted RBP14.63□□□□□ -0.07
CCDC88B-206ENST00000473405 RPL39P5Q59GN2 51 aa14.63□□□□□ -0.07
CCDC88B-206ENST00000473405 ASPHD1Q5U4P2 390 aa14.63□□□□□ -0.07
CCDC88B-206ENST00000473405 MOB1BQ7L9L4 216 aa14.63□□□□□ -0.07
CCDC88B-206ENST00000473405 UFD1Q92890 307 aa14.63□□□□□ -0.07
CCDC88B-206ENST00000473405 HDHD3Q9BSH5 251 aaPredicted RBP14.63□□□□□ -0.07
CCDC88B-206ENST00000473405 CHMP1AQ9HD42 196 aaPredicted RBP14.63□□□□□ -0.07
CCDC88B-206ENST00000473405 SCN3BQ9NY72 215 aa14.63□□□□□ -0.07
CCDC88B-206ENST00000473405 SLC23A1Q9UHI7 598 aa14.63□□□□□ -0.07
CCDC88B-206ENST00000473405 AK3Q9UIJ7 227 aa14.63□□□□□ -0.07
CCDC88B-206ENST00000473405 SCOCQ9UIL1 159 aa14.63□□□□□ -0.07
CCDC88B-206ENST00000473405 TRBV6-6A0A0A6YYG2 114 aa14.62□□□□□ -0.07
CCDC88B-206ENST00000473405 TRAV41A0A0B4J266 112 aa14.62□□□□□ -0.07
CCDC88B-206ENST00000473405 I3L521 148 aa14.62□□□□□ -0.07
CCDC88B-206ENST00000473405 SLC17A2O00624 439 aa14.62□□□□□ -0.07
CCDC88B-206ENST00000473405 SOCS1O15524 211 aa14.62□□□□□ -0.07
CCDC88B-206ENST00000473405 CT45A6P0DMU7 189 aa14.62□□□□□ -0.07
CCDC88B-206ENST00000473405 CT45A5P0DMU8 189 aa14.62□□□□□ -0.07
CCDC88B-206ENST00000473405 CT45A7P0DMV0 189 aa14.62□□□□□ -0.07
CCDC88B-206ENST00000473405 RPS25P62851 125 aaKnown RBP14.62□□□□□ -0.07
CCDC88B-206ENST00000473405 TPBGQ13641 420 aa14.62□□□□□ -0.07
CCDC88B-206ENST00000473405 P2RY14Q15391 338 aa14.62□□□□□ -0.07
CCDC88B-206ENST00000473405 C19orf54Q5BKX5 351 aa14.62□□□□□ -0.07
CCDC88B-206ENST00000473405 C9orf66Q5T8R8 295 aa14.62□□□□□ -0.07
CCDC88B-206ENST00000473405 FAM89BQ8N5H3 189 aa14.62□□□□□ -0.07
CCDC88B-206ENST00000473405 ZNF491Q8N8L2 437 aa14.62□□□□□ -0.07
CCDC88B-206ENST00000473405 OR11H1Q8NG94 326 aa14.62□□□□□ -0.07
CCDC88B-206ENST00000473405 SETD6Q8TBK2 473 aa14.62□□□□□ -0.07
CCDC88B-206ENST00000473405 UBE2E2Q96LR5 201 aa14.62□□□□□ -0.07
CCDC88B-206ENST00000473405 AGMATQ9BSE5 352 aa14.62□□□□□ -0.07
CCDC88B-206ENST00000473405 DUSP21Q9H596 190 aa14.62□□□□□ -0.07
CCDC88B-206ENST00000473405 PLEKHJ1Q9NW61 149 aa14.62□□□□□ -0.07
CCDC88B-206ENST00000473405 PIPOXQ9P0Z9 390 aa14.62□□□□□ -0.07
CCDC88B-206ENST00000473405 ZMAT5Q9UDW3 170 aaKnown RBP14.62□□□□□ -0.07
CCDC88B-206ENST00000473405 FBXO7Q9Y3I1 522 aa14.62□□□□□ -0.07
CCDC88B-206ENST00000473405 SEC14L6B5MCN3 397 aa14.61□□□□□ -0.07
CCDC88B-206ENST00000473405 RAB29O14966 203 aa14.61□□□□□ -0.07
CCDC88B-206ENST00000473405 RAMP3O60896 148 aa14.61□□□□□ -0.07
CCDC88B-206ENST00000473405 ARSBP15848 533 aa14.61□□□□□ -0.07
CCDC88B-206ENST00000473405 GNB1P62873 340 aa14.61□□□□□ -0.07
CCDC88B-206ENST00000473405 RUNX1Q01196 453 aa14.61□□□□□ -0.07
CCDC88B-206ENST00000473405 DCTN2Q13561 401 aaKnown RBP14.61□□□□□ -0.07
CCDC88B-206ENST00000473405 LIN54Q6MZP7 749 aa14.61□□□□□ -0.07
CCDC88B-206ENST00000473405 MINDY2Q8NBR6 621 aa14.61□□□□□ -0.07
CCDC88B-206ENST00000473405 OR1A1Q9P1Q5 309 aa14.61□□□□□ -0.07
CCDC88B-206ENST00000473405 ITGB1BP1O14713 200 aa14.6□□□□□ -0.07
CCDC88B-206ENST00000473405 SOX15O60248 233 aa14.6□□□□□ -0.07
CCDC88B-206ENST00000473405 CRIP2P52943 208 aaPredicted RBP14.6□□□□□ -0.07
CCDC88B-206ENST00000473405 HLA-DRB3P79483 266 aa14.6□□□□□ -0.07
CCDC88B-206ENST00000473405 TMEM65Q6PI78 240 aa14.6□□□□□ -0.07
CCDC88B-206ENST00000473405 GLDNQ6ZMI3 551 aaPredicted RBP14.6□□□□□ -0.07
CCDC88B-206ENST00000473405 ABHD14BQ96IU4 210 aa14.6□□□□□ -0.07
CCDC88B-206ENST00000473405 PRR25Q96S07 402 aa14.6□□□□□ -0.07
CCDC88B-206ENST00000473405 RIMS4Q9H426 269 aaPredicted RBP14.6□□□□□ -0.07
CCDC88B-206ENST00000473405 PLGRKTQ9HBL7 147 aa14.6□□□□□ -0.07
CCDC88B-206ENST00000473405 KIAA1456Q9P272 454 aa14.6□□□□□ -0.07
CCDC88B-206ENST00000473405 HSF4Q9ULV5 492 aa14.6□□□□□ -0.07
CCDC88B-206ENST00000473405 VSIG4Q9Y279 399 aa14.6□□□□□ -0.07
CCDC88B-206ENST00000473405 LSM4Q9Y4Z0 139 aaKnown RBP14.6□□□□□ -0.07
CCDC88B-206ENST00000473405 OR5H14A6NHG9 310 aa14.59□□□□□ -0.07
CCDC88B-206ENST00000473405 H0YJW9 148 aa14.59□□□□□ -0.07
CCDC88B-206ENST00000473405 HSMCR30P0CW71 290 aa14.59□□□□□ -0.07
CCDC88B-206ENST00000473405 CPEP16870 476 aa14.59□□□□□ -0.07
CCDC88B-206ENST00000473405 TMEM50BP56557 158 aa14.59□□□□□ -0.07
CCDC88B-206ENST00000473405 OR5B12Q96R08 314 aa14.59□□□□□ -0.07
CCDC88B-206ENST00000473405 URM1Q9BTM9 101 aaKnown RBP14.59□□□□□ -0.07
CCDC88B-206ENST00000473405 FBXL15Q9H469 300 aa14.59□□□□□ -0.07
CCDC88B-206ENST00000473405 ISYNA1Q9NPH2 558 aa14.59□□□□□ -0.07
CCDC88B-206ENST00000473405 C12orf4Q9NQ89 552 aa14.59□□□□□ -0.07
CCDC88B-206ENST00000473405 TPRKBQ9Y3C4 175 aa14.59□□□□□ -0.07
CCDC88B-206ENST00000473405 AK6Q9Y3D8 172 aaKnown RBP14.59□□□□□ -0.07
CCDC88B-206ENST00000473405 SORL1Q92673 2214 aa14.59□□□□□ -0.07
CCDC88B-206ENST00000473405 RRHO14718 337 aa14.58□□□□□ -0.08
CCDC88B-206ENST00000473405 RGS10O43665 173 aa14.58□□□□□ -0.08
CCDC88B-206ENST00000473405 PROP1O75360 226 aa14.58□□□□□ -0.08
CCDC88B-206ENST00000473405 OR8U8P0C7N1 319 aa14.58□□□□□ -0.08
CCDC88B-206ENST00000473405 SNRPBP14678 240 aaKnown RBP14.58□□□□□ -0.08
CCDC88B-206ENST00000473405 RAB9AP51151 201 aa14.58□□□□□ -0.08
CCDC88B-206ENST00000473405 CLDN12P56749 244 aa14.58□□□□□ -0.08
CCDC88B-206ENST00000473405 FABP5Q01469 135 aa14.58□□□□□ -0.08
CCDC88B-206ENST00000473405 ZNF616Q08AN1 781 aa14.58□□□□□ -0.08
CCDC88B-206ENST00000473405 MLLT11Q13015 90 aaPredicted RBP14.58□□□□□ -0.08
CCDC88B-206ENST00000473405 RAB11BQ15907 218 aa14.58□□□□□ -0.08
CCDC88B-206ENST00000473405 ECSCRQ19T08 205 aa14.58□□□□□ -0.08
CCDC88B-206ENST00000473405 OR5AN1Q8NGI8 311 aa14.58□□□□□ -0.08
CCDC88B-206ENST00000473405 OR1N2Q8NGR9 330 aa14.58□□□□□ -0.08
CCDC88B-206ENST00000473405 ARHGAP5-AS1Q96IT6 56 aa14.58□□□□□ -0.08
CCDC88B-206ENST00000473405 C11orf54Q9H0W9 315 aaPredicted RBP14.58□□□□□ -0.08
CCDC88B-206ENST00000473405 IGKV1-6A0A0C4DH72 117 aa14.57□□□□□ -0.08
CCDC88B-206ENST00000473405 FCN1O00602 326 aa14.57□□□□□ -0.08
CCDC88B-206ENST00000473405 ARL6IP5O75915 188 aa14.57□□□□□ -0.08
CCDC88B-206ENST00000473405 SCTP09683 121 aa14.57□□□□□ -0.08
CCDC88B-206ENST00000473405 EGR2P11161 476 aaPredicted RBP14.57□□□□□ -0.08
CCDC88B-206ENST00000473405 ZBTB25P24278 435 aa14.57□□□□□ -0.08
CCDC88B-206ENST00000473405 CRHBPP24387 322 aa14.57□□□□□ -0.08
CCDC88B-206ENST00000473405 PSMA1P25786 263 aaKnown RBP14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms