RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 S100PBPQ96BU1 408 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 HIST1H2AAQ96QV6 131 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 NEU1Q99519 415 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 VSIRQ9H7M9 311 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 HES4Q9HCC6 221 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 SLC39A9Q9NUM3 307 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 PPP1R14DQ9NXH3 145 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 ERRFI1Q9UJM3 462 aaPredicted RBP4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 BOKQ9UMX3 212 aaPredicted RBP4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 POLDIP2Q9Y2S7 368 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 LY96Q9Y6Y9 160 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 URGCP-MRPS24S4R325 110 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 CACNA1EQ15878 2313 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 ESPL1Q14674 2120 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 MED19A0JLT2 244 aaPredicted RBP4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 TMEM210A6NLX4 147 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 ANKRD30BLA7E2S9 258 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 CEBPZOSA8MTT3 80 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 H7BYZ3 331 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 RAB29O14966 203 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 MRPL33O75394 65 aaKnown RBP4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 COX5AP20674 150 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 TUBG1P23258 451 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 PI4KAP42356 2102 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 LHX2P50458 406 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 YPEL3P61236 119 aaPredicted RBP4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 RPL15P61313 204 aaKnown RBP4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 SELENOTP62341 195 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 TMEM267Q0VDI3 215 aaPredicted RBP4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 IGFBP7Q16270 282 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 IQCJQ1A5X6 159 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 OR51H1Q8NH63 302 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 LHX4Q969G2 390 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 NEIL1Q96FI4 390 aaPredicted RBP4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 TMEM204Q9BSN7 226 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 TUBG2Q9NRH3 451 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 KCNIP2Q9NS61 270 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 A0A1B0GV50 99 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 LRRC30A6NM36 301 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 C17orf112F2Z3M2 114 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 SLC33A1O00400 549 aaPredicted RBP4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 SYNGR1O43759 233 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 CLDN14O95500 239 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 IL18BPO95998 194 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 MYF5P13349 255 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 CD1BP29016 333 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 TNFSF10P50591 281 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 CLDN18P56856 261 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 ARF1P84077 181 aaKnown RBP4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 SSPNQ14714 243 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 SLC10A1Q14973 349 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 RSPO4Q2I0M5 234 aaPredicted RBP4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 ZNF468Q5VIY5 522 aaPredicted RBP4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 SLC35E4Q6ICL7 350 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 ZNF66Q6ZN08 573 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 NUFIP2Q7Z417 695 aaKnown RBP4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 PPP1R32Q7Z5V6 425 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 ZNF664Q8N3J9 261 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 GBGT1Q8N5D6 347 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 OR2T10Q8NGZ9 312 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 SNX22Q96L94 193 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 JSRP1Q96MG2 331 aaPredicted RBP4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 ZPBPQ9BS86 351 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 PARLQ9H300 379 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 ZNF552Q9H707 407 aaPredicted RBP4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 AKIRIN1Q9H9L7 192 aaPredicted RBP4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 PILRBQ9UKJ0 227 aa4.84□□□□□ -1.63
CCDC88A-203ENST00000412148 ASCC3Q8N3C0 2202 aaKnown RBP4.84□□□□□ -1.64
CCDC88A-203ENST00000412148 KIAA2026Q5HYC2 2103 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 LAMA2P24043 3122 aaKnown RBP4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 M0QZK8 103 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 NXPH2O95156 264 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 IGKV1D-33P01593 117 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 IGKV1-33P01594 117 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 PATE4P0C8F1 98 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 GZMHP20718 246 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 TRIP6Q15654 476 aaKnown RBP4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 C1orf194Q5T5A4 169 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 LYSMD4Q5XG99 296 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 ACSM6Q6P461 480 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 LCN15Q6UWW0 184 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 BEND4Q6ZU67 534 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 C5orf24Q7Z6I8 188 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 YRDCQ86U90 279 aaKnown RBP4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 DRAM1Q8N682 238 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 Q8N7P7 452 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 OR52E5Q8NH55 327 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 IFI44Q8TCB0 444 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 HS3ST6Q96QI5 342 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 FAM173AQ9BQD7 235 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 RTL8AQ9BWD3 113 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 OR51B6Q9H340 312 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 PXMP4Q9Y6I8 212 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 MKI67P46013 3256 aaKnown RBP4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 GTF3C1Q12789 2109 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 MYO9BQ13459 2157 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 TMEM265A0A087WTH1 108 aa4.83□□□□□ -1.64
CCDC88A-203ENST00000412148 A0A1B0GWJ7 208 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms