RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 TAS2R43P59537 309 aa5.12□□□□□ -1.59
USP40-202ENST00000409945 MFGE8Q08431 387 aaPredicted RBP5.12□□□□□ -1.59
USP40-202ENST00000409945 FAM201AQ5SY85 155 aa5.12□□□□□ -1.59
USP40-202ENST00000409945 OR2G6Q5TZ20 316 aa5.12□□□□□ -1.59
USP40-202ENST00000409945 OR4A47Q6IF82 309 aa5.12□□□□□ -1.59
USP40-202ENST00000409945 HAGHLQ6PII5 290 aaPredicted RBP5.12□□□□□ -1.59
USP40-202ENST00000409945 Q8IYB0 196 aa5.12□□□□□ -1.59
USP40-202ENST00000409945 SYS1Q8N2H4 156 aa5.12□□□□□ -1.59
USP40-202ENST00000409945 OR13C3Q8NGS6 347 aa5.12□□□□□ -1.59
USP40-202ENST00000409945 H1FXQ92522 213 aaKnown RBP5.12□□□□□ -1.59
USP40-202ENST00000409945 RIMS4Q9H426 269 aaPredicted RBP5.12□□□□□ -1.59
USP40-202ENST00000409945 DOCK11Q5JSL3 2073 aa5.12□□□□□ -1.59
USP40-202ENST00000409945 IGHV3OR15-7A0A075B7D8 119 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 LOC107986453A0A1B0GWG9 222 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 FAM230AA0A1W2PPH8 454 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 TMEM212A6NML5 194 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 OR2AT4A6NND4 320 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 ZNF879B4DU55 563 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 F8VVB4 439 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 F8VWA3 439 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 TRAPPC2LH3BP13 241 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 RGS5O15539 181 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 AKR7A2O43488 359 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 CDRT1O95170 752 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 IGLV3-1P01715 115 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 CCL1P22362 96 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 ACTG1P63261 375 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 IFITM3Q01628 133 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 PAX8Q06710 450 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 TRAM1Q15629 374 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 C22orf42Q6IC83 251 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 LYPD2Q6UXB3 125 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 LHFPL3Q86UP9 236 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 MKXQ8IYA7 352 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 ZNF565Q8N9K5 539 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 ZSCAN4Q8NAM6 433 aaPredicted RBP5.11□□□□□ -1.59
USP40-202ENST00000409945 C19orf18Q8NEA5 215 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 OR5D14Q8NGL3 314 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 TSEN15Q8WW01 171 aaKnown RBP5.11□□□□□ -1.59
USP40-202ENST00000409945 C4orf36Q96KX1 117 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 CCL13Q99616 98 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 ZNF649Q9BS31 505 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 PKIBQ9C010 78 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 CHST5Q9GZS9 411 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 OR51I2Q9H344 312 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 MMP26Q9NRE1 261 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 ABCB10Q9NRK6 738 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 GPR173Q9NS66 373 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 ACOXLQ9NUZ1 547 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 RHBDL2Q9NX52 303 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 MXRA5Q9NR99 2828 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 SNURFLB1AK76 121 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 MAGEB4O15481 346 aaPredicted RBP5.11□□□□□ -1.59
USP40-202ENST00000409945 SRSF10O75494 262 aaKnown RBP5.11□□□□□ -1.59
USP40-202ENST00000409945 IGHV4-59P01825 116 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 APOA1P02647 267 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 ISG15P05161 165 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 CELP19835 753 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 RANBP1P43487 201 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 CDX1P47902 265 aaPredicted RBP5.11□□□□□ -1.59
USP40-202ENST00000409945 TGM4P49221 684 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 OR12D2P58182 307 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 RPS25P62851 125 aaKnown RBP5.11□□□□□ -1.59
USP40-202ENST00000409945 ZNF85Q03923 595 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 RBM39Q14498 530 aaKnown RBP5.11□□□□□ -1.59
USP40-202ENST00000409945 CCDC58Q4VC31 144 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 DDI2Q5TDH0 399 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 FAM53AQ6NSI3 398 aaPredicted RBP5.11□□□□□ -1.59
USP40-202ENST00000409945 SSX6Q7RTT6 188 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 WDR86Q86TI4 376 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 ZNF561Q8N587 486 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 TMEM185AQ8NFB2 350 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 OR2G2Q8NGZ5 317 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 OR5AK2Q8NH90 309 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 TRMT10AQ8TBZ6 339 aaKnown RBP5.11□□□□□ -1.59
USP40-202ENST00000409945 HPSE2Q8WWQ2 592 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 AQP3Q92482 292 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 TMEM203Q969S6 136 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 UPRTQ96BW1 309 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 BARHL1Q9BZE3 327 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 GPR61Q9BZJ8 451 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 BABAM2Q9NXR7 383 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 ONECUT1Q9UBC0 465 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 KPTNQ9Y664 436 aa5.11□□□□□ -1.59
USP40-202ENST00000409945 ANK3Q12955 4377 aaKnown RBP5.1□□□□□ -1.59
USP40-202ENST00000409945 TRAV40A0A0B4J280 105 aa5.1□□□□□ -1.59
USP40-202ENST00000409945 TRBV2A0A0J9YWF9 115 aa5.1□□□□□ -1.59
USP40-202ENST00000409945 BTBD17A6NE02 478 aa5.1□□□□□ -1.59
USP40-202ENST00000409945 MFSD2BA6NFX1 497 aa5.1□□□□□ -1.59
USP40-202ENST00000409945 SIGLEC5O15389 551 aa5.1□□□□□ -1.59
USP40-202ENST00000409945 SDC2P34741 201 aa5.1□□□□□ -1.59
USP40-202ENST00000409945 PSMD7P51665 324 aa5.1□□□□□ -1.59
USP40-202ENST00000409945 ARHGDIBP52566 201 aa5.1□□□□□ -1.59
USP40-202ENST00000409945 CAV3P56539 151 aa5.1□□□□□ -1.59
USP40-202ENST00000409945 HILS1P60008 231 aa5.1□□□□□ -1.59
USP40-202ENST00000409945 FGF12P61328 243 aa5.1□□□□□ -1.59
USP40-202ENST00000409945 PPP3R1P63098 170 aa5.1□□□□□ -1.59
USP40-202ENST00000409945 MRPS15P82914 257 aaKnown RBP5.1□□□□□ -1.59
USP40-202ENST00000409945 FABP5Q01469 135 aa5.1□□□□□ -1.59
USP40-202ENST00000409945 BAMBIQ13145 260 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms