RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 SAMD12Q8N8I0 201 aa17.35■□□□□ 0.37
CLN3-207ENST00000395653 ACOT12Q8WYK0 555 aa17.35■□□□□ 0.37
CLN3-207ENST00000395653 MAFIPQ8WZ33 124 aa17.35■□□□□ 0.37
CLN3-207ENST00000395653 S100A16Q96FQ6 103 aaKnown RBP17.35■□□□□ 0.37
CLN3-207ENST00000395653 AGMATQ9BSE5 352 aa17.35■□□□□ 0.37
CLN3-207ENST00000395653 TRBV6-7A0A0A0MS04 114 aa17.34■□□□□ 0.37
CLN3-207ENST00000395653 TMEM11P17152 192 aa17.34■□□□□ 0.37
CLN3-207ENST00000395653 RORCP51449 518 aa17.34■□□□□ 0.37
CLN3-207ENST00000395653 BLCAPP62952 87 aa17.34■□□□□ 0.37
CLN3-207ENST00000395653 IGSF11Q5DX21 431 aa17.34■□□□□ 0.37
CLN3-207ENST00000395653 C11orf54Q9H0W9 315 aaPredicted RBP17.34■□□□□ 0.37
CLN3-207ENST00000395653 RDH8Q9NYR8 311 aa17.34■□□□□ 0.37
CLN3-207ENST00000395653 SIGLEC9Q9Y336 463 aa17.34■□□□□ 0.37
CLN3-207ENST00000395653 MOB4Q9Y3A3 225 aa17.34■□□□□ 0.37
CLN3-207ENST00000395653 IGHV3-72A0A0B4J1Y9 119 aa17.33■□□□□ 0.36
CLN3-207ENST00000395653 RAB29O14966 203 aa17.33■□□□□ 0.36
CLN3-207ENST00000395653 XRCC3O43542 346 aa17.33■□□□□ 0.36
CLN3-207ENST00000395653 SSX5O60225 188 aa17.33■□□□□ 0.36
CLN3-207ENST00000395653 CLVS1Q8IUQ0 354 aaPredicted RBP17.33■□□□□ 0.36
CLN3-207ENST00000395653 OR2T10Q8NGZ9 312 aa17.33■□□□□ 0.36
CLN3-207ENST00000395653 OR10J5Q8NHC4 309 aa17.33■□□□□ 0.36
CLN3-207ENST00000395653 CMTM3Q96MX0 182 aa17.33■□□□□ 0.36
CLN3-207ENST00000395653 AUNIPQ9H7T9 357 aa17.33■□□□□ 0.36
CLN3-207ENST00000395653 IGKV1D-8A0A087WSZ0 117 aa17.32■□□□□ 0.36
CLN3-207ENST00000395653 BET1O15155 118 aa17.32■□□□□ 0.36
CLN3-207ENST00000395653 OR3A3P47888 321 aa17.32■□□□□ 0.36
CLN3-207ENST00000395653 LSAMPQ13449 338 aa17.32■□□□□ 0.36
CLN3-207ENST00000395653 RAB2BQ8WUD1 216 aa17.32■□□□□ 0.36
CLN3-207ENST00000395653 EAF1Q96JC9 268 aaPredicted RBP17.32■□□□□ 0.36
CLN3-207ENST00000395653 S1PR3Q99500 378 aa17.32■□□□□ 0.36
CLN3-207ENST00000395653 BCL7BQ9BQE9 202 aa17.32■□□□□ 0.36
CLN3-207ENST00000395653 ZNF251Q9BRH9 671 aa17.32■□□□□ 0.36
CLN3-207ENST00000395653 ST6GALNAC5Q9BVH7 336 aa17.32■□□□□ 0.36
CLN3-207ENST00000395653 HNF4GQ14541 408 aa17.31■□□□□ 0.36
CLN3-207ENST00000395653 Q8N6K4 173 aa17.31■□□□□ 0.36
CLN3-207ENST00000395653 AP3S1Q92572 193 aa17.31■□□□□ 0.36
CLN3-207ENST00000395653 ABHD14BQ96IU4 210 aa17.31■□□□□ 0.36
CLN3-207ENST00000395653 NABP2Q9BQ15 211 aa17.31■□□□□ 0.36
CLN3-207ENST00000395653 MRPL20Q9BYC9 149 aaKnown RBP17.31■□□□□ 0.36
CLN3-207ENST00000395653 COMMD3Q9UBI1 195 aa17.31■□□□□ 0.36
CLN3-207ENST00000395653 ZNF736B4DX44 427 aaPredicted RBP17.3■□□□□ 0.36
CLN3-207ENST00000395653 FGF16O43320 207 aa17.3■□□□□ 0.36
CLN3-207ENST00000395653 APOA1P02647 267 aa17.3■□□□□ 0.36
CLN3-207ENST00000395653 AMY1AP04745 511 aa17.3■□□□□ 0.36
CLN3-207ENST00000395653 AMY2AP04746 511 aa17.3■□□□□ 0.36
CLN3-207ENST00000395653 TMBIM6P55061 237 aa17.3■□□□□ 0.36
CLN3-207ENST00000395653 Q6ZS46 218 aa17.3■□□□□ 0.36
CLN3-207ENST00000395653 CITED1Q99966 193 aa17.3■□□□□ 0.36
CLN3-207ENST00000395653 SERTAD4Q9NUC0 356 aa17.3■□□□□ 0.36
CLN3-207ENST00000395653 SCOCQ9UIL1 159 aa17.3■□□□□ 0.36
CLN3-207ENST00000395653 MOSP00540 346 aa17.3■□□□□ 0.36
CLN3-207ENST00000395653 CTXN2P0C2S0 81 aa17.3■□□□□ 0.36
CLN3-207ENST00000395653 ZNF182P17025 639 aaPredicted RBP17.3■□□□□ 0.36
CLN3-207ENST00000395653 KRTAP10-3P60369 221 aa17.3■□□□□ 0.36
CLN3-207ENST00000395653 ABCA11PQ4W5N1 156 aa17.3■□□□□ 0.36
CLN3-207ENST00000395653 RPL39P5Q59GN2 51 aa17.3■□□□□ 0.36
CLN3-207ENST00000395653 TMEM69Q5SWH9 247 aa17.3■□□□□ 0.36
CLN3-207ENST00000395653 GINS4Q9BRT9 223 aa17.3■□□□□ 0.36
CLN3-207ENST00000395653 ANXA10Q9UJ72 324 aa17.3■□□□□ 0.36
CLN3-207ENST00000395653 EIF4EP06730 217 aaKnown RBP17.29■□□□□ 0.36
CLN3-207ENST00000395653 ARSJQ5FYB0 599 aaPredicted RBP17.29■□□□□ 0.36
CLN3-207ENST00000395653 MZT2AQ6P582 158 aa17.29■□□□□ 0.36
CLN3-207ENST00000395653 C5orf56Q8N8D9 126 aa17.29■□□□□ 0.36
CLN3-207ENST00000395653 OR8H1Q8NGG4 311 aa17.29■□□□□ 0.36
CLN3-207ENST00000395653 ZNF221Q9UK13 617 aa17.29■□□□□ 0.36
CLN3-207ENST00000395653 CBX5P45973 191 aa17.28■□□□□ 0.36
CLN3-207ENST00000395653 TAS2R20P59543 309 aa17.28■□□□□ 0.36
CLN3-207ENST00000395653 SRSF4Q08170 494 aaKnown RBP17.28■□□□□ 0.36
CLN3-207ENST00000395653 SPCS2Q15005 226 aa17.28■□□□□ 0.36
CLN3-207ENST00000395653 CNIH2Q6PI25 160 aa17.28■□□□□ 0.36
CLN3-207ENST00000395653 H1FOOQ8IZA3 346 aaPredicted RBP17.28■□□□□ 0.36
CLN3-207ENST00000395653 ZNF436-AS1Q8NC38 126 aaPredicted RBP17.28■□□□□ 0.36
CLN3-207ENST00000395653 RNF150Q9ULK6 438 aa17.28■□□□□ 0.36
CLN3-207ENST00000395653 OR8U9P0C7N5 309 aa17.27■□□□□ 0.35
CLN3-207ENST00000395653 PTHLHP12272 177 aa17.27■□□□□ 0.35
CLN3-207ENST00000395653 VDAC2P45880 294 aaPredicted RBP17.27■□□□□ 0.35
CLN3-207ENST00000395653 GPR12P47775 334 aa17.27■□□□□ 0.35
CLN3-207ENST00000395653 HOGA1Q86XE5 327 aa17.27■□□□□ 0.35
CLN3-207ENST00000395653 KLHDC1Q8N7A1 406 aa17.27■□□□□ 0.35
CLN3-207ENST00000395653 BEST4Q8NFU0 473 aa17.27■□□□□ 0.35
CLN3-207ENST00000395653 OR8U1Q8NH10 309 aa17.27■□□□□ 0.35
CLN3-207ENST00000395653 WNT10AQ9GZT5 417 aa17.27■□□□□ 0.35
CLN3-207ENST00000395653 GAB2Q9UQC2 676 aa17.27■□□□□ 0.35
CLN3-207ENST00000395653 OR5H14A6NHG9 310 aa17.26■□□□□ 0.35
CLN3-207ENST00000395653 HPGDSO60760 199 aa17.26■□□□□ 0.35
CLN3-207ENST00000395653 PROP1O75360 226 aa17.26■□□□□ 0.35
CLN3-207ENST00000395653 CT45A6P0DMU7 189 aa17.26■□□□□ 0.35
CLN3-207ENST00000395653 CT45A5P0DMU8 189 aa17.26■□□□□ 0.35
CLN3-207ENST00000395653 CT45A7P0DMV0 189 aa17.26■□□□□ 0.35
CLN3-207ENST00000395653 SOX6P35712 828 aa17.26■□□□□ 0.35
CLN3-207ENST00000395653 GVQW1Q8N7I0 195 aa17.26■□□□□ 0.35
CLN3-207ENST00000395653 PLSCR3Q9NRY6 295 aa17.26■□□□□ 0.35
CLN3-207ENST00000395653 SMIM31A0A1B0GVY4 71 aa17.25■□□□□ 0.35
CLN3-207ENST00000395653 SH2D7A6NKC9 451 aaPredicted RBP17.25■□□□□ 0.35
CLN3-207ENST00000395653 NCBP2LA6PVI3 153 aaKnown RBP17.25■□□□□ 0.35
CLN3-207ENST00000395653 NOL3O60936 208 aaKnown RBP17.25■□□□□ 0.35
CLN3-207ENST00000395653 VSIG10L2P0DP72 767 aa17.25■□□□□ 0.35
CLN3-207ENST00000395653 ELK1P19419 428 aa17.25■□□□□ 0.35
CLN3-207ENST00000395653 TMEM95Q3KNT9 176 aa17.25■□□□□ 0.35
CLN3-207ENST00000395653 SGMS2Q8NHU3 365 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms