RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 RAB39BQ96DA2 213 aa15.35■□□□□ 0.05
CLN3-204ENST00000357857 WDR89Q96FK6 387 aaPredicted RBP15.35■□□□□ 0.05
CLN3-204ENST00000357857 C5orf30Q96GV9 206 aa15.35■□□□□ 0.05
CLN3-204ENST00000357857 SSBP3Q9BWW4 388 aaPredicted RBP15.35■□□□□ 0.05
CLN3-204ENST00000357857 METTL8Q9H825 291 aaKnown RBP15.35■□□□□ 0.05
CLN3-204ENST00000357857 A0A1W2PPH5 198 aa15.34■□□□□ 0.05
CLN3-204ENST00000357857 RNF212BA8MTL3 300 aa15.34■□□□□ 0.05
CLN3-204ENST00000357857 SLC31A2O15432 143 aa15.34■□□□□ 0.05
CLN3-204ENST00000357857 B3GALNT1O75752 331 aa15.34■□□□□ 0.05
CLN3-204ENST00000357857 HOXB5P09067 269 aa15.34■□□□□ 0.05
CLN3-204ENST00000357857 ERVFRD-1P60508 538 aa15.34■□□□□ 0.05
CLN3-204ENST00000357857 ESCO2Q56NI9 601 aa15.34■□□□□ 0.05
CLN3-204ENST00000357857 GSG1LQ6UXU4 331 aa15.34■□□□□ 0.05
CLN3-204ENST00000357857 ZNF439Q8NDP4 499 aa15.34■□□□□ 0.05
CLN3-204ENST00000357857 OR2T35Q8NGX2 323 aa15.34■□□□□ 0.05
CLN3-204ENST00000357857 NRGNQ92686 78 aa15.34■□□□□ 0.05
CLN3-204ENST00000357857 PDCD10Q9BUL8 212 aa15.34■□□□□ 0.05
CLN3-204ENST00000357857 BPESC1Q9GZL8 116 aa15.34■□□□□ 0.05
CLN3-204ENST00000357857 IFI27L2Q9H2X8 130 aa15.34■□□□□ 0.05
CLN3-204ENST00000357857 SDHAF2Q9NX18 166 aa15.34■□□□□ 0.05
CLN3-204ENST00000357857 PPIAL4CA0A0B4J2A2 164 aa15.34■□□□□ 0.05
CLN3-204ENST00000357857 C5orf51A6NDU8 294 aa15.34■□□□□ 0.05
CLN3-204ENST00000357857 PPIAL4GP0DN37 164 aa15.34■□□□□ 0.05
CLN3-204ENST00000357857 UCP1P25874 307 aa15.34■□□□□ 0.05
CLN3-204ENST00000357857 SRSF4Q08170 494 aaKnown RBP15.34■□□□□ 0.05
CLN3-204ENST00000357857 Q3ZCU0 254 aa15.34■□□□□ 0.05
CLN3-204ENST00000357857 CT45A1Q5HYN5 189 aa15.34■□□□□ 0.05
CLN3-204ENST00000357857 ZNF787Q6DD87 383 aa15.34■□□□□ 0.05
CLN3-204ENST00000357857 NOXA1Q86UR1 476 aa15.34■□□□□ 0.05
CLN3-204ENST00000357857 CT45A3Q8NHU0 189 aa15.34■□□□□ 0.05
CLN3-204ENST00000357857 LIN7CQ9NUP9 197 aaKnown RBP15.34■□□□□ 0.05
CLN3-204ENST00000357857 HELZ2Q9BYK8 2649 aaKnown RBP15.34■□□□□ 0.05
CLN3-204ENST00000357857 ARID1AO14497 2285 aa15.33■□□□□ 0.04
CLN3-204ENST00000357857 C13orf42A0A1B0GVH6 325 aa15.33■□□□□ 0.04
CLN3-204ENST00000357857 A0A1W2PPE3 182 aa15.33■□□□□ 0.04
CLN3-204ENST00000357857 C17orf98A8MV24 154 aa15.33■□□□□ 0.04
CLN3-204ENST00000357857 IGHV2-5P01817 119 aa15.33■□□□□ 0.04
CLN3-204ENST00000357857 GNG10P50151 68 aa15.33■□□□□ 0.04
CLN3-204ENST00000357857 NKX2-5P52952 324 aaPredicted RBP15.33■□□□□ 0.04
CLN3-204ENST00000357857 EIF4EBP1Q13541 118 aaPredicted RBP15.33■□□□□ 0.04
CLN3-204ENST00000357857 LY6G5BQ8NDX9 201 aa15.33■□□□□ 0.04
CLN3-204ENST00000357857 LHFPL5Q8TAF8 219 aa15.33■□□□□ 0.04
CLN3-204ENST00000357857 C18orf12Q96KH6 178 aa15.33■□□□□ 0.04
CLN3-204ENST00000357857 TMEM56Q96MV1 263 aa15.33■□□□□ 0.04
CLN3-204ENST00000357857 RANBP3Q9H6Z4 567 aaPredicted RBP15.33■□□□□ 0.04
CLN3-204ENST00000357857 TMEM56-RWDD3S4R434 201 aa15.33■□□□□ 0.04
CLN3-204ENST00000357857 USP9YO00507 2555 aaPredicted RBP15.33■□□□□ 0.04
CLN3-204ENST00000357857 C22orf46C9J442 243 aa15.32■□□□□ 0.04
CLN3-204ENST00000357857 IFNA21P01568 189 aa15.32■□□□□ 0.04
CLN3-204ENST00000357857 ZNF16P17020 682 aaPredicted RBP15.32■□□□□ 0.04
CLN3-204ENST00000357857 SSTR2P30874 369 aa15.32■□□□□ 0.04
CLN3-204ENST00000357857 C11orf91Q3C1V1 193 aa15.32■□□□□ 0.04
CLN3-204ENST00000357857 BTNL3Q6UXE8 466 aa15.32■□□□□ 0.04
CLN3-204ENST00000357857 FAM168AQ92567 244 aa15.32■□□□□ 0.04
CLN3-204ENST00000357857 SEC22AQ96IW7 307 aa15.32■□□□□ 0.04
CLN3-204ENST00000357857 PIMREGQ9BSJ6 248 aa15.32■□□□□ 0.04
CLN3-204ENST00000357857 DOPEY2Q9Y3R5 2298 aa15.32■□□□□ 0.04
CLN3-204ENST00000357857 LOC105371242A0A075B767 164 aa15.31■□□□□ 0.04
CLN3-204ENST00000357857 CDS2O95674 445 aa15.31■□□□□ 0.04
CLN3-204ENST00000357857 LIPFP07098 398 aa15.31■□□□□ 0.04
CLN3-204ENST00000357857 IGHV1-8P0DP01 117 aa15.31■□□□□ 0.04
CLN3-204ENST00000357857 PAX1P15863 534 aa15.31■□□□□ 0.04
CLN3-204ENST00000357857 DNASE1P24855 282 aa15.31■□□□□ 0.04
CLN3-204ENST00000357857 GZMKP49863 264 aa15.31■□□□□ 0.04
CLN3-204ENST00000357857 CATR1Q13166 79 aa15.31■□□□□ 0.04
CLN3-204ENST00000357857 TMEM268Q5VZI3 342 aa15.31■□□□□ 0.04
CLN3-204ENST00000357857 GGNBP1Q5YKI7 109 aa15.31■□□□□ 0.04
CLN3-204ENST00000357857 ZNF66Q6ZN08 573 aa15.31■□□□□ 0.04
CLN3-204ENST00000357857 SLC25A48Q6ZT89 311 aaKnown RBP15.31■□□□□ 0.04
CLN3-204ENST00000357857 ZNF695Q8IW36 515 aa15.31■□□□□ 0.04
CLN3-204ENST00000357857 C11orf42Q8N5U0 333 aa15.31■□□□□ 0.04
CLN3-204ENST00000357857 PERPQ96FX8 193 aa15.31■□□□□ 0.04
CLN3-204ENST00000357857 HSD17B10Q99714 261 aaKnown RBP15.31■□□□□ 0.04
CLN3-204ENST00000357857 GAB2Q9UQC2 676 aa15.31■□□□□ 0.04
CLN3-204ENST00000357857 GCN1Q92616 2671 aaKnown RBP15.31■□□□□ 0.04
CLN3-204ENST00000357857 MPTX1A8MV57 137 aa15.31■□□□□ 0.04
CLN3-204ENST00000357857 G3V3Q6 166 aa15.31■□□□□ 0.04
CLN3-204ENST00000357857 NDUFS8O00217 210 aa15.31■□□□□ 0.04
CLN3-204ENST00000357857 RBP4P02753 201 aa15.31■□□□□ 0.04
CLN3-204ENST00000357857 SERPINE2P07093 398 aa15.31■□□□□ 0.04
CLN3-204ENST00000357857 CLEC2AQ6UVW9 174 aa15.31■□□□□ 0.04
CLN3-204ENST00000357857 LYZL2Q7Z4W2 148 aa15.31■□□□□ 0.04
CLN3-204ENST00000357857 SELENOHQ8IZQ5 122 aaKnown RBP15.31■□□□□ 0.04
CLN3-204ENST00000357857 ZNF436-AS1Q8NC38 126 aaPredicted RBP15.31■□□□□ 0.04
CLN3-204ENST00000357857 CLDND2Q8NHS1 167 aa15.31■□□□□ 0.04
CLN3-204ENST00000357857 PSMG3-AS1Q96PY0 264 aa15.31■□□□□ 0.04
CLN3-204ENST00000357857 SESN1Q9Y6P5 492 aa15.31■□□□□ 0.04
CLN3-204ENST00000357857 ARHGAP32A7KAX9 2087 aa15.31■□□□□ 0.04
CLN3-204ENST00000357857 RAB29O14966 203 aa15.3■□□□□ 0.04
CLN3-204ENST00000357857 RPL30P62888 115 aaKnown RBP15.3■□□□□ 0.04
CLN3-204ENST00000357857 CYCSP99999 105 aaKnown RBP15.3■□□□□ 0.04
CLN3-204ENST00000357857 RPL39P5Q59GN2 51 aa15.3■□□□□ 0.04
CLN3-204ENST00000357857 Q5BKY6 102 aa15.3■□□□□ 0.04
CLN3-204ENST00000357857 LYG1Q8N1E2 194 aa15.3■□□□□ 0.04
CLN3-204ENST00000357857 SLC35G3Q8N808 338 aa15.3■□□□□ 0.04
CLN3-204ENST00000357857 C10orf105Q8TEF2 133 aa15.3■□□□□ 0.04
CLN3-204ENST00000357857 TCTEX1D2Q8WW35 142 aa15.3■□□□□ 0.04
CLN3-204ENST00000357857 RBPMSQ93062 196 aaKnown RBP15.3■□□□□ 0.04
CLN3-204ENST00000357857 IL22RA2Q969J5 263 aa15.3■□□□□ 0.04
CLN3-204ENST00000357857 OR10C1Q96KK4 312 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms