RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 FBXO7Q9Y3I1 522 aa11.36□□□□□ -0.59
CCDC88B-201ENST00000301897 A3GALT2U3KPV4 340 aa11.36□□□□□ -0.59
CCDC88B-201ENST00000301897 LOC100130705A0A1B0GUX0 176 aa11.35□□□□□ -0.59
CCDC88B-201ENST00000301897 UBE2QL1A1L167 161 aa11.35□□□□□ -0.59
CCDC88B-201ENST00000301897 H0Y980 276 aa11.35□□□□□ -0.59
CCDC88B-201ENST00000301897 RAB29O14966 203 aa11.35□□□□□ -0.59
CCDC88B-201ENST00000301897 CRTAPO75718 401 aaPredicted RBP11.35□□□□□ -0.59
CCDC88B-201ENST00000301897 TFAP2AP05549 437 aa11.35□□□□□ -0.59
CCDC88B-201ENST00000301897 OR3A3P47888 321 aa11.35□□□□□ -0.59
CCDC88B-201ENST00000301897 TPPP2P59282 170 aa11.35□□□□□ -0.59
CCDC88B-201ENST00000301897 MED21Q13503 144 aa11.35□□□□□ -0.59
CCDC88B-201ENST00000301897 LRRC36Q1X8D7 754 aa11.35□□□□□ -0.59
CCDC88B-201ENST00000301897 MOGAT2Q3SYC2 334 aa11.35□□□□□ -0.59
CCDC88B-201ENST00000301897 FAM131AQ6UXB0 335 aa11.35□□□□□ -0.59
CCDC88B-201ENST00000301897 PPP1R27Q86WC6 154 aa11.35□□□□□ -0.59
CCDC88B-201ENST00000301897 APH1BQ8WW43 257 aa11.35□□□□□ -0.59
CCDC88B-201ENST00000301897 GHSRQ92847 366 aa11.35□□□□□ -0.59
CCDC88B-201ENST00000301897 ORAI1Q96D31 301 aa11.35□□□□□ -0.59
CCDC88B-201ENST00000301897 RHOVQ96L33 236 aa11.35□□□□□ -0.59
CCDC88B-201ENST00000301897 C9orf16Q9BUW7 83 aa11.35□□□□□ -0.59
CCDC88B-201ENST00000301897 FBXL15Q9H469 300 aa11.35□□□□□ -0.59
CCDC88B-201ENST00000301897 IGHV3-11P01762 117 aa11.34□□□□□ -0.59
CCDC88B-201ENST00000301897 GSTP1P09211 210 aaKnown RBP11.34□□□□□ -0.59
CCDC88B-201ENST00000301897 MYL12AP19105 171 aa11.34□□□□□ -0.59
CCDC88B-201ENST00000301897 ETV1P50549 477 aa11.34□□□□□ -0.59
CCDC88B-201ENST00000301897 OR2G6Q5TZ20 316 aa11.34□□□□□ -0.59
CCDC88B-201ENST00000301897 UNQ5815/PRO19632Q6UWF5 114 aa11.34□□□□□ -0.59
CCDC88B-201ENST00000301897 ZNF562Q6V9R5 426 aa11.34□□□□□ -0.59
CCDC88B-201ENST00000301897 MRPL30Q8TCC3 161 aaKnown RBP11.34□□□□□ -0.59
CCDC88B-201ENST00000301897 THRSPQ92748 146 aa11.34□□□□□ -0.59
CCDC88B-201ENST00000301897 SLC29A1Q99808 456 aa11.34□□□□□ -0.59
CCDC88B-201ENST00000301897 RSRP1Q9BUV0 290 aa11.34□□□□□ -0.59
CCDC88B-201ENST00000301897 IFI27L2Q9H2X8 130 aa11.34□□□□□ -0.59
CCDC88B-201ENST00000301897 BANF2Q9H503 90 aa11.34□□□□□ -0.59
CCDC88B-201ENST00000301897 RANGRFQ9HD47 186 aaPredicted RBP11.34□□□□□ -0.59
CCDC88B-201ENST00000301897 CNOT2Q9NZN8 540 aaKnown RBP11.34□□□□□ -0.59
CCDC88B-201ENST00000301897 GHRLQ9UBU3 117 aa11.34□□□□□ -0.59
CCDC88B-201ENST00000301897 EXOSC1Q9Y3B2 195 aaKnown RBP11.34□□□□□ -0.59
CCDC88B-201ENST00000301897 TRAV8-7A0A075B6U6 113 aa11.33□□□□□ -0.6
CCDC88B-201ENST00000301897 A0A0G2JLM5 398 aa11.33□□□□□ -0.6
CCDC88B-201ENST00000301897 H3BUA1 57 aa11.33□□□□□ -0.6
CCDC88B-201ENST00000301897 EGR2P11161 476 aaPredicted RBP11.33□□□□□ -0.6
CCDC88B-201ENST00000301897 ARSBP15848 533 aa11.33□□□□□ -0.6
CCDC88B-201ENST00000301897 CAPGP40121 348 aa11.33□□□□□ -0.6
CCDC88B-201ENST00000301897 C6orf141Q5SZD1 244 aa11.33□□□□□ -0.6
CCDC88B-201ENST00000301897 DMKNQ6E0U4 476 aaPredicted RBP11.33□□□□□ -0.6
CCDC88B-201ENST00000301897 SIGIRRQ6IA17 410 aa11.33□□□□□ -0.6
CCDC88B-201ENST00000301897 ADAMTSL5Q6ZMM2 481 aa11.33□□□□□ -0.6
CCDC88B-201ENST00000301897 C10orf67Q8IYJ2 551 aa11.33□□□□□ -0.6
CCDC88B-201ENST00000301897 NKAIN3Q8N8D7 197 aa11.33□□□□□ -0.6
CCDC88B-201ENST00000301897 OR13C5Q8NGS8 318 aa11.33□□□□□ -0.6
CCDC88B-201ENST00000301897 CASTOR1Q8WTX7 329 aa11.33□□□□□ -0.6
CCDC88B-201ENST00000301897 NEDD4LQ96PU5 975 aa11.33□□□□□ -0.6
CCDC88B-201ENST00000301897 OR14A2Q96R54 314 aa11.33□□□□□ -0.6
CCDC88B-201ENST00000301897 UQCC2Q9BRT2 126 aa11.33□□□□□ -0.6
CCDC88B-201ENST00000301897 SLC23A1Q9UHI7 598 aa11.33□□□□□ -0.6
CCDC88B-201ENST00000301897 WASHC3Q9Y3C0 194 aa11.33□□□□□ -0.6
CCDC88B-201ENST00000301897 TRBV5-7A0A0A0MS05 114 aa11.32□□□□□ -0.6
CCDC88B-201ENST00000301897 C13orf42A0A1B0GVH6 325 aa11.32□□□□□ -0.6
CCDC88B-201ENST00000301897 H0YJW9 148 aa11.32□□□□□ -0.6
CCDC88B-201ENST00000301897 H7C2Y5 167 aa11.32□□□□□ -0.6
CCDC88B-201ENST00000301897 ITGB1BP1O14713 200 aa11.32□□□□□ -0.6
CCDC88B-201ENST00000301897 SLC22A1O15245 554 aa11.32□□□□□ -0.6
CCDC88B-201ENST00000301897 WBP4O75554 376 aaKnown RBP11.32□□□□□ -0.6
CCDC88B-201ENST00000301897 SPDEFO95238 335 aa11.32□□□□□ -0.6
CCDC88B-201ENST00000301897 LALBAP00709 142 aa11.32□□□□□ -0.6
CCDC88B-201ENST00000301897 TRGV3P03979 118 aa11.32□□□□□ -0.6
CCDC88B-201ENST00000301897 TAS2R43P59537 309 aa11.32□□□□□ -0.6
CCDC88B-201ENST00000301897 RPS11P62280 158 aaKnown RBP eCLIP11.32□□□□□ -0.6
CCDC88B-201ENST00000301897 HMGN3Q15651 99 aa11.32□□□□□ -0.6
CCDC88B-201ENST00000301897 SMN1Q16637 294 aaKnown RBP11.32□□□□□ -0.6
CCDC88B-201ENST00000301897 HAGHQ16775 308 aa11.32□□□□□ -0.6
CCDC88B-201ENST00000301897 GTSCR1Q86UQ5 136 aa11.32□□□□□ -0.6
CCDC88B-201ENST00000301897 IL1F10Q8WWZ1 152 aa11.32□□□□□ -0.6
CCDC88B-201ENST00000301897 MS4A10Q96PG2 267 aa11.32□□□□□ -0.6
CCDC88B-201ENST00000301897 TSNAXQ99598 290 aaKnown RBP11.32□□□□□ -0.6
CCDC88B-201ENST00000301897 TUBA4BQ9H853 241 aa11.32□□□□□ -0.6
CCDC88B-201ENST00000301897 FCN1O00602 326 aa11.31□□□□□ -0.6
CCDC88B-201ENST00000301897 UBBP0CG47 229 aa11.31□□□□□ -0.6
CCDC88B-201ENST00000301897 CT45A6P0DMU7 189 aa11.31□□□□□ -0.6
CCDC88B-201ENST00000301897 CT45A5P0DMU8 189 aa11.31□□□□□ -0.6
CCDC88B-201ENST00000301897 CT45A7P0DMV0 189 aa11.31□□□□□ -0.6
CCDC88B-201ENST00000301897 LCN12Q6JVE5 192 aa11.31□□□□□ -0.6
CCDC88B-201ENST00000301897 MOB1BQ7L9L4 216 aa11.31□□□□□ -0.6
CCDC88B-201ENST00000301897 LFNGQ8NES3 379 aa11.31□□□□□ -0.6
CCDC88B-201ENST00000301897 OR5AN1Q8NGI8 311 aa11.31□□□□□ -0.6
CCDC88B-201ENST00000301897 METTL1Q9UBP6 276 aaKnown RBP11.31□□□□□ -0.6
CCDC88B-201ENST00000301897 DIMT1Q9UNQ2 313 aaKnown RBP11.31□□□□□ -0.6
CCDC88B-201ENST00000301897 ST8SIA5O15466 376 aa11.3□□□□□ -0.6
CCDC88B-201ENST00000301897 MAPK3P27361 379 aaPredicted RBP11.3□□□□□ -0.6
CCDC88B-201ENST00000301897 KLF5Q13887 457 aaPredicted RBP11.3□□□□□ -0.6
CCDC88B-201ENST00000301897 TATDN3Q17R31 274 aa11.3□□□□□ -0.6
CCDC88B-201ENST00000301897 C5orf24Q7Z6I8 188 aa11.3□□□□□ -0.6
CCDC88B-201ENST00000301897 HAPLN4Q86UW8 402 aa11.3□□□□□ -0.6
CCDC88B-201ENST00000301897 POC5Q8NA72 575 aa11.3□□□□□ -0.6
CCDC88B-201ENST00000301897 ZNF555Q8NEP9 628 aa11.3□□□□□ -0.6
CCDC88B-201ENST00000301897 EDARADDQ8WWZ3 215 aa11.3□□□□□ -0.6
CCDC88B-201ENST00000301897 PGLYRP3Q96LB9 341 aa11.3□□□□□ -0.6
CCDC88B-201ENST00000301897 ZNF355PQ9NSJ1 428 aa11.3□□□□□ -0.6
CCDC88B-201ENST00000301897 GAB2Q9UQC2 676 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms