RNA–Protein interactions for RNA: ENST00000623985.3

LINC00643-206, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 864 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-206ENST00000623985 NCBP2LA6PVI3 153 aaKnown RBP11.72□□□□□ -0.53
LINC00643-206ENST00000623985 FOXI3A8MTJ6 420 aaPredicted RBP11.72□□□□□ -0.53
LINC00643-206ENST00000623985 LSAMPQ13449 338 aa11.72□□□□□ -0.53
LINC00643-206ENST00000623985 BEAN1Q3B7T3 259 aa11.72□□□□□ -0.53
LINC00643-206ENST00000623985 KHDC1LQ5JSQ8 128 aa11.72□□□□□ -0.53
LINC00643-206ENST00000623985 KPRPQ5T749 579 aaPredicted RBP11.72□□□□□ -0.53
LINC00643-206ENST00000623985 CD200R1LQ6Q8B3 271 aa11.72□□□□□ -0.53
LINC00643-206ENST00000623985 C10orf99Q6UWK7 81 aa11.72□□□□□ -0.53
LINC00643-206ENST00000623985 Q6ZPA2 131 aa11.72□□□□□ -0.53
LINC00643-206ENST00000623985 SLC35E3Q7Z769 313 aa11.72□□□□□ -0.53
LINC00643-206ENST00000623985 FOXRED2Q8IWF2 684 aa11.72□□□□□ -0.53
LINC00643-206ENST00000623985 Q8N9W7 124 aa11.72□□□□□ -0.53
LINC00643-206ENST00000623985 OR2AK2Q8NG84 335 aa11.72□□□□□ -0.53
LINC00643-206ENST00000623985 OR51D1Q8NGF3 324 aa11.72□□□□□ -0.53
LINC00643-206ENST00000623985 ABCG5Q9H222 651 aa11.72□□□□□ -0.53
LINC00643-206ENST00000623985 Q9H521 79 aa11.72□□□□□ -0.53
LINC00643-206ENST00000623985 STEAP1Q9UHE8 339 aa11.72□□□□□ -0.53
LINC00643-206ENST00000623985 HSF4Q9ULV5 492 aa11.72□□□□□ -0.53
LINC00643-206ENST00000623985 MGAT4AQ9UM21 535 aa11.72□□□□□ -0.53
LINC00643-206ENST00000623985 DNAH3Q8TD57 4116 aa11.72□□□□□ -0.53
LINC00643-206ENST00000623985 TRAV1-2A0A0B4J238 106 aa11.71□□□□□ -0.53
LINC00643-206ENST00000623985 SERPINE3A8MV23 424 aa11.71□□□□□ -0.53
LINC00643-206ENST00000623985 PDCD5O14737 125 aa11.71□□□□□ -0.53
LINC00643-206ENST00000623985 SOCS1O15524 211 aa11.71□□□□□ -0.53
LINC00643-206ENST00000623985 GALP22466 123 aa11.71□□□□□ -0.53
LINC00643-206ENST00000623985 MYL9P24844 172 aa11.71□□□□□ -0.53
LINC00643-206ENST00000623985 CLDN12P56749 244 aa11.71□□□□□ -0.53
LINC00643-206ENST00000623985 FAM71F2Q6NXP2 309 aa11.71□□□□□ -0.53
LINC00643-206ENST00000623985 ZNF833PQ6ZTB9 187 aa11.71□□□□□ -0.53
LINC00643-206ENST00000623985 ODF3L1Q8IXM7 274 aa11.71□□□□□ -0.53
LINC00643-206ENST00000623985 FAM71E2Q8N5Q1 922 aa11.71□□□□□ -0.53
LINC00643-206ENST00000623985 OR56B1Q8NGI3 324 aa11.71□□□□□ -0.53
LINC00643-206ENST00000623985 SETD6Q8TBK2 473 aa11.71□□□□□ -0.53
LINC00643-206ENST00000623985 IL1F10Q8WWZ1 152 aa11.71□□□□□ -0.53
LINC00643-206ENST00000623985 FAM3DQ96BQ1 224 aa11.71□□□□□ -0.53
LINC00643-206ENST00000623985 NOL4LQ96MY1 436 aaPredicted RBP11.71□□□□□ -0.53
LINC00643-206ENST00000623985 C12orf4Q9NQ89 552 aa11.71□□□□□ -0.53
LINC00643-206ENST00000623985 AK3Q9UIJ7 227 aa11.71□□□□□ -0.53
LINC00643-206ENST00000623985 NOTCH3Q9UM47 2321 aa11.7□□□□□ -0.54
LINC00643-206ENST00000623985 SAA2-SAA4A0A096LPE2 208 aa11.7□□□□□ -0.54
LINC00643-206ENST00000623985 ZNF736B4DX44 427 aaPredicted RBP11.7□□□□□ -0.54
LINC00643-206ENST00000623985 AP4M1O00189 453 aa11.7□□□□□ -0.54
LINC00643-206ENST00000623985 LDLRAD4O15165 306 aa11.7□□□□□ -0.54
LINC00643-206ENST00000623985 PF4P02776 101 aa11.7□□□□□ -0.54
LINC00643-206ENST00000623985 SAA2P0DJI9 122 aaPredicted RBP11.7□□□□□ -0.54
LINC00643-206ENST00000623985 GPR12P47775 334 aa11.7□□□□□ -0.54
LINC00643-206ENST00000623985 VEGFCP49767 419 aa11.7□□□□□ -0.54
LINC00643-206ENST00000623985 SLC35B1P78383 322 aa11.7□□□□□ -0.54
LINC00643-206ENST00000623985 HLA-DRB3P79483 266 aa11.7□□□□□ -0.54
LINC00643-206ENST00000623985 UBE2UQ5VVX9 321 aa11.7□□□□□ -0.54
LINC00643-206ENST00000623985 C5orf24Q7Z6I8 188 aa11.7□□□□□ -0.54
LINC00643-206ENST00000623985 ZNF329Q86UD4 541 aa11.7□□□□□ -0.54
LINC00643-206ENST00000623985 STPG2Q8N412 459 aa11.7□□□□□ -0.54
LINC00643-206ENST00000623985 COMMD1Q8N668 190 aa11.7□□□□□ -0.54
LINC00643-206ENST00000623985 S1PR3Q99500 378 aa11.7□□□□□ -0.54
LINC00643-206ENST00000623985 IFI27L2Q9H2X8 130 aa11.7□□□□□ -0.54
LINC00643-206ENST00000623985 PLSCR3Q9NRY6 295 aa11.7□□□□□ -0.54
LINC00643-206ENST00000623985 TMEM272A0A1B0GTI8 110 aa11.69□□□□□ -0.54
LINC00643-206ENST00000623985 TRDV1A0A1B0GX56 115 aa11.69□□□□□ -0.54
LINC00643-206ENST00000623985 DENRO43583 198 aaKnown RBP11.69□□□□□ -0.54
LINC00643-206ENST00000623985 CD33P20138 364 aa11.69□□□□□ -0.54
LINC00643-206ENST00000623985 C2orf76Q3KRA6 126 aa11.69□□□□□ -0.54
LINC00643-206ENST00000623985 HES5Q5TA89 166 aa11.69□□□□□ -0.54
LINC00643-206ENST00000623985 FCGR1BQ92637 280 aa11.69□□□□□ -0.54
LINC00643-206ENST00000623985 ARHGAP5-AS1Q96IT6 56 aa11.69□□□□□ -0.54
LINC00643-206ENST00000623985 RASL11BQ9BPW5 248 aa11.69□□□□□ -0.54
LINC00643-206ENST00000623985 NABP2Q9BQ15 211 aa11.69□□□□□ -0.54
LINC00643-206ENST00000623985 HDHD3Q9BSH5 251 aaPredicted RBP11.69□□□□□ -0.54
LINC00643-206ENST00000623985 PECRQ9BY49 303 aa11.69□□□□□ -0.54
LINC00643-206ENST00000623985 MRPL20Q9BYC9 149 aaKnown RBP11.69□□□□□ -0.54
LINC00643-206ENST00000623985 PIPOXQ9P0Z9 390 aa11.69□□□□□ -0.54
LINC00643-206ENST00000623985 SHISA3A0PJX4 238 aa11.68□□□□□ -0.54
LINC00643-206ENST00000623985 IFITM5A6NNB3 132 aa11.68□□□□□ -0.54
LINC00643-206ENST00000623985 ITGB1BP1O14713 200 aa11.68□□□□□ -0.54
LINC00643-206ENST00000623985 RRP9O43818 475 aaKnown RBP11.68□□□□□ -0.54
LINC00643-206ENST00000623985 RAB3BP20337 219 aa11.68□□□□□ -0.54
LINC00643-206ENST00000623985 SLC6A1P30531 599 aa11.68□□□□□ -0.54
LINC00643-206ENST00000623985 F2RL1P55085 397 aa11.68□□□□□ -0.54
LINC00643-206ENST00000623985 TMEM50BP56557 158 aa11.68□□□□□ -0.54
LINC00643-206ENST00000623985 OR10A3P58181 314 aa11.68□□□□□ -0.54
LINC00643-206ENST00000623985 RPL23AP62750 156 aaKnown RBP11.68□□□□□ -0.54
LINC00643-206ENST00000623985 MMDQ15546 238 aa11.68□□□□□ -0.54
LINC00643-206ENST00000623985 SPARTQ8N0X7 666 aa11.68□□□□□ -0.54
LINC00643-206ENST00000623985 EDARADDQ8WWZ3 215 aa11.68□□□□□ -0.54
LINC00643-206ENST00000623985 CMSS1Q9BQ75 279 aaKnown RBP11.68□□□□□ -0.54
LINC00643-206ENST00000623985 GON7Q9BXV9 100 aa11.68□□□□□ -0.54
LINC00643-206ENST00000623985 YTHDF1Q9BYJ9 559 aaKnown RBP11.68□□□□□ -0.54
LINC00643-206ENST00000623985 SLC23A1Q9UHI7 598 aa11.68□□□□□ -0.54
LINC00643-206ENST00000623985 LINC00527Q9UJ94 153 aa11.68□□□□□ -0.54
LINC00643-206ENST00000623985 RAB22AQ9UL26 194 aa11.68□□□□□ -0.54
LINC00643-206ENST00000623985 RAB29O14966 203 aa11.67□□□□□ -0.54
LINC00643-206ENST00000623985 ST8SIA5O15466 376 aa11.67□□□□□ -0.54
LINC00643-206ENST00000623985 RAB6AP20340 208 aa11.67□□□□□ -0.54
LINC00643-206ENST00000623985 ZBTB25P24278 435 aa11.67□□□□□ -0.54
LINC00643-206ENST00000623985 SOX6P35712 828 aa11.67□□□□□ -0.54
LINC00643-206ENST00000623985 OR3A3P47888 321 aa11.67□□□□□ -0.54
LINC00643-206ENST00000623985 OXLD1Q5BKU9 147 aa11.67□□□□□ -0.54
LINC00643-206ENST00000623985 PLAC9Q5JTB6 97 aa11.67□□□□□ -0.54
LINC00643-206ENST00000623985 C22orf42Q6IC83 251 aa11.67□□□□□ -0.54
LINC00643-206ENST00000623985 REC114Q7Z4M0 266 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms