RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	RGS11	O94810	467 aa		13.7	□□□□□ -0.22
SHKBP1-223	ENST00000600552	IGF1	P05019	195 aa		13.7	□□□□□ -0.22
SHKBP1-223	ENST00000600552	GNAO1	P09471	354 aa		13.7	□□□□□ -0.22
SHKBP1-223	ENST00000600552	BLVRB	P30043	206 aa	Predicted RBP	13.7	□□□□□ -0.22
SHKBP1-223	ENST00000600552	WNT4	P56705	351 aa		13.7	□□□□□ -0.22
SHKBP1-223	ENST00000600552	STEAP3	Q658P3	488 aa		13.7	□□□□□ -0.22
SHKBP1-223	ENST00000600552	CDH26	Q8IXH8	852 aa		13.7	□□□□□ -0.22
SHKBP1-223	ENST00000600552	C8orf59	Q8N0T1	100 aa	Predicted RBP	13.7	□□□□□ -0.22
SHKBP1-223	ENST00000600552	GAPT	Q8N292	157 aa		13.7	□□□□□ -0.22
SHKBP1-223	ENST00000600552	OR2AK2	Q8NG84	335 aa		13.7	□□□□□ -0.22
SHKBP1-223	ENST00000600552	CASTOR1	Q8WTX7	329 aa		13.7	□□□□□ -0.22
SHKBP1-223	ENST00000600552	GALM	Q96C23	342 aa		13.7	□□□□□ -0.22
SHKBP1-223	ENST00000600552	NABP2	Q9BQ15	211 aa		13.7	□□□□□ -0.22
SHKBP1-223	ENST00000600552	SULT4A1	Q9BR01	284 aa		13.7	□□□□□ -0.22
SHKBP1-223	ENST00000600552	CST11	Q9H112	138 aa		13.7	□□□□□ -0.22
SHKBP1-223	ENST00000600552	KCNK15	Q9H427	330 aa		13.7	□□□□□ -0.22
SHKBP1-223	ENST00000600552	ABRACL	Q9P1F3	81 aa		13.7	□□□□□ -0.22
SHKBP1-223	ENST00000600552	JPT1	Q9UK76	154 aa		13.7	□□□□□ -0.22
SHKBP1-223	ENST00000600552	VSIG4	Q9Y279	399 aa		13.7	□□□□□ -0.22
SHKBP1-223	ENST00000600552	LSM4	Q9Y4Z0	139 aa	Known RBP	13.7	□□□□□ -0.22
SHKBP1-223	ENST00000600552	TENM3	Q9P273	2699 aa		13.69	□□□□□ -0.22
SHKBP1-223	ENST00000600552	SAA2-SAA4	A0A096LPE2	208 aa		13.69	□□□□□ -0.22
SHKBP1-223	ENST00000600552	ST8SIA5	O15466	376 aa		13.69	□□□□□ -0.22
SHKBP1-223	ENST00000600552	SC5D	O75845	299 aa		13.69	□□□□□ -0.22
SHKBP1-223	ENST00000600552	GLA	P06280	429 aa		13.69	□□□□□ -0.22
SHKBP1-223	ENST00000600552	NHLRC4	P0CG21	123 aa	Predicted RBP	13.69	□□□□□ -0.22
SHKBP1-223	ENST00000600552	SAA2	P0DJI9	122 aa	Predicted RBP	13.69	□□□□□ -0.22
SHKBP1-223	ENST00000600552	MAPK3	P27361	379 aa	Predicted RBP	13.69	□□□□□ -0.22
SHKBP1-223	ENST00000600552	GNB1	P62873	340 aa		13.69	□□□□□ -0.22
SHKBP1-223	ENST00000600552	GABPB1	Q06547	395 aa	Predicted RBP	13.69	□□□□□ -0.22
SHKBP1-223	ENST00000600552	PLGLA	Q15195	96 aa		13.69	□□□□□ -0.22
SHKBP1-223	ENST00000600552	RBM48	Q5RL73	367 aa	Known RBP	13.69	□□□□□ -0.22
SHKBP1-223	ENST00000600552	FAM27D1	Q5T7N8	215 aa		13.69	□□□□□ -0.22
SHKBP1-223	ENST00000600552	LIN54	Q6MZP7	749 aa		13.69	□□□□□ -0.22
SHKBP1-223	ENST00000600552	GLDN	Q6ZMI3	551 aa	Predicted RBP	13.69	□□□□□ -0.22
SHKBP1-223	ENST00000600552	C6orf201	Q7Z4U5	140 aa		13.69	□□□□□ -0.22
SHKBP1-223	ENST00000600552	ODF3L1	Q8IXM7	274 aa		13.69	□□□□□ -0.22
SHKBP1-223	ENST00000600552	NKAIN3	Q8N8D7	197 aa		13.69	□□□□□ -0.22
SHKBP1-223	ENST00000600552	ZNF491	Q8N8L2	437 aa		13.69	□□□□□ -0.22
SHKBP1-223	ENST00000600552	UQCC2	Q9BRT2	126 aa		13.69	□□□□□ -0.22
SHKBP1-223	ENST00000600552	TMED9	Q9BVK6	235 aa		13.69	□□□□□ -0.22
SHKBP1-223	ENST00000600552	ALX4	Q9H161	411 aa	Predicted RBP	13.69	□□□□□ -0.22
SHKBP1-223	ENST00000600552	MBNL3	Q9NUK0	354 aa	Known RBP	13.69	□□□□□ -0.22
SHKBP1-223	ENST00000600552	PSORS1C1	Q9UIG5	152 aa		13.69	□□□□□ -0.22
SHKBP1-223	ENST00000600552	ZNF256	Q9Y2P7	627 aa	Predicted RBP	13.69	□□□□□ -0.22
SHKBP1-223	ENST00000600552	IGHV7-81	A0A0B4J1V7	117 aa		13.68	□□□□□ -0.22
SHKBP1-223	ENST00000600552	OR8U8	P0C7N1	319 aa		13.68	□□□□□ -0.22
SHKBP1-223	ENST00000600552	ZNF616	Q08AN1	781 aa		13.68	□□□□□ -0.22
SHKBP1-223	ENST00000600552	RCN1	Q15293	331 aa		13.68	□□□□□ -0.22
SHKBP1-223	ENST00000600552	C5orf64	Q2M2E5	130 aa		13.68	□□□□□ -0.22
SHKBP1-223	ENST00000600552	ACSM3	Q53FZ2	586 aa		13.68	□□□□□ -0.22
SHKBP1-223	ENST00000600552	LAIR2	Q6ISS4	152 aa		13.68	□□□□□ -0.22
SHKBP1-223	ENST00000600552	FAM131A	Q6UXB0	335 aa		13.68	□□□□□ -0.22
SHKBP1-223	ENST00000600552	UBE2E2	Q96LR5	201 aa		13.68	□□□□□ -0.22
SHKBP1-223	ENST00000600552	CLCC1	Q96S66	551 aa		13.68	□□□□□ -0.22
SHKBP1-223	ENST00000600552	FBXL15	Q9H469	300 aa		13.68	□□□□□ -0.22
SHKBP1-223	ENST00000600552	CNOT2	Q9NZN8	540 aa	Known RBP	13.68	□□□□□ -0.22
SHKBP1-223	ENST00000600552	STEAP1	Q9UHE8	339 aa		13.68	□□□□□ -0.22
SHKBP1-223	ENST00000600552	ERGIC3	Q9Y282	383 aa		13.68	□□□□□ -0.22
SHKBP1-223	ENST00000600552	KMT2C	Q8NEZ4	4911 aa	Known RBP	13.67	□□□□□ -0.22
SHKBP1-223	ENST00000600552	YPEL1	O60688	119 aa		13.67	□□□□□ -0.22
SHKBP1-223	ENST00000600552	HLA-DRB1	P01911	266 aa		13.67	□□□□□ -0.22
SHKBP1-223	ENST00000600552	CHAT	P28329	748 aa		13.67	□□□□□ -0.22
SHKBP1-223	ENST00000600552	PPIF	P30405	207 aa	Known RBP	13.67	□□□□□ -0.22
SHKBP1-223	ENST00000600552	RAB9A	P51151	201 aa		13.67	□□□□□ -0.22
SHKBP1-223	ENST00000600552	HTD2	P86397	168 aa		13.67	□□□□□ -0.22
SHKBP1-223	ENST00000600552	KIAA0141	Q14154	515 aa	Predicted RBP	13.67	□□□□□ -0.22
SHKBP1-223	ENST00000600552	RPL39P5	Q59GN2	51 aa		13.67	□□□□□ -0.22
SHKBP1-223	ENST00000600552	ZNF833P	Q6ZTB9	187 aa		13.67	□□□□□ -0.22
SHKBP1-223	ENST00000600552	LYPD6	Q86Y78	171 aa		13.67	□□□□□ -0.22
SHKBP1-223	ENST00000600552	PACRGL	Q8N7B6	248 aa		13.67	□□□□□ -0.22
SHKBP1-223	ENST00000600552	NANOGP1	Q8N7R0	232 aa		13.67	□□□□□ -0.22
SHKBP1-223	ENST00000600552	DCUN1D4	Q92564	292 aa		13.67	□□□□□ -0.22
SHKBP1-223	ENST00000600552	YPEL2	Q96QA6	119 aa		13.67	□□□□□ -0.22
SHKBP1-223	ENST00000600552	NICN1	Q9BSH3	213 aa		13.67	□□□□□ -0.22
SHKBP1-223	ENST00000600552	TMEM59	Q9BXS4	323 aa		13.67	□□□□□ -0.22
SHKBP1-223	ENST00000600552		A0A1W2PN81	502 aa		13.66	□□□□□ -0.22
SHKBP1-223	ENST00000600552	PTGES3L	E9PB15	166 aa		13.66	□□□□□ -0.22
SHKBP1-223	ENST00000600552		H7C2Y5	167 aa		13.66	□□□□□ -0.22
SHKBP1-223	ENST00000600552	GSTP1	P09211	210 aa	Known RBP	13.66	□□□□□ -0.22
SHKBP1-223	ENST00000600552	HTR2C	P28335	458 aa		13.66	□□□□□ -0.22
SHKBP1-223	ENST00000600552	CHRNA7	P36544	502 aa		13.66	□□□□□ -0.22
SHKBP1-223	ENST00000600552	SLURP1	P55000	103 aa		13.66	□□□□□ -0.22
SHKBP1-223	ENST00000600552	FHL3	Q13643	280 aa		13.66	□□□□□ -0.22
SHKBP1-223	ENST00000600552	ASPHD1	Q5U4P2	390 aa		13.66	□□□□□ -0.22
SHKBP1-223	ENST00000600552	GLT8D1	Q68CQ7	371 aa		13.66	□□□□□ -0.22
SHKBP1-223	ENST00000600552	CEACAM19	Q7Z692	300 aa		13.66	□□□□□ -0.22
SHKBP1-223	ENST00000600552	THRSP	Q92748	146 aa		13.66	□□□□□ -0.22
SHKBP1-223	ENST00000600552	CHCHD6	Q9BRQ6	235 aa		13.66	□□□□□ -0.22
SHKBP1-223	ENST00000600552	GHRL	Q9UBU3	117 aa		13.66	□□□□□ -0.22
SHKBP1-223	ENST00000600552	LRRC42	Q9Y546	428 aa		13.66	□□□□□ -0.22
SHKBP1-223	ENST00000600552	SORL1	Q92673	2214 aa		13.66	□□□□□ -0.22
SHKBP1-223	ENST00000600552		I3L521	148 aa		13.65	□□□□□ -0.22
SHKBP1-223	ENST00000600552	OVOL1	O14753	267 aa		13.65	□□□□□ -0.22
SHKBP1-223	ENST00000600552	SAP30	O75446	220 aa		13.65	□□□□□ -0.22
SHKBP1-223	ENST00000600552	IGLV1-40	P01703	118 aa		13.65	□□□□□ -0.22
SHKBP1-223	ENST00000600552	UBB	P0CG47	229 aa		13.65	□□□□□ -0.22
SHKBP1-223	ENST00000600552	RPS27A	P62979	156 aa	Known RBP	13.65	□□□□□ -0.22
SHKBP1-223	ENST00000600552	P2RY14	Q15391	338 aa		13.65	□□□□□ -0.22
SHKBP1-223	ENST00000600552	HMGN3	Q15651	99 aa		13.65	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms