RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 FAM90A7PA6NKC0 464 aa14.82□□□□□ -0.04
PNKP-213ENST00000599543 NOTOA8MTQ0 251 aa14.82□□□□□ -0.04
PNKP-213ENST00000599543 FAM90A23PA8MXZ1 464 aa14.82□□□□□ -0.04
PNKP-213ENST00000599543 SDCBPO00560 298 aaPredicted RBP14.82□□□□□ -0.04
PNKP-213ENST00000599543 LDLRAD4O15165 306 aa14.82□□□□□ -0.04
PNKP-213ENST00000599543 GAPDHP04406 335 aaKnown RBP14.82□□□□□ -0.04
PNKP-213ENST00000599543 ZNF816Q0VGE8 651 aaPredicted RBP14.82□□□□□ -0.04
PNKP-213ENST00000599543 MOGAT2Q3SYC2 334 aa14.82□□□□□ -0.04
PNKP-213ENST00000599543 MOB3BQ86TA1 216 aa14.82□□□□□ -0.04
PNKP-213ENST00000599543 ARL11Q969Q4 196 aa14.82□□□□□ -0.04
PNKP-213ENST00000599543 HDHD3Q9BSH5 251 aaPredicted RBP14.82□□□□□ -0.04
PNKP-213ENST00000599543 URM1Q9BTM9 101 aaKnown RBP14.82□□□□□ -0.04
PNKP-213ENST00000599543 FUNDC2Q9BWH2 189 aa14.82□□□□□ -0.04
PNKP-213ENST00000599543 NAA50Q9GZZ1 169 aaKnown RBP14.82□□□□□ -0.04
PNKP-213ENST00000599543 TRAPPC2LQ9UL33 140 aa14.82□□□□□ -0.04
PNKP-213ENST00000599543 IGHV1-3A0A0C4DH29 117 aa14.81□□□□□ -0.04
PNKP-213ENST00000599543 RCC1P18754 421 aaPredicted RBP14.81□□□□□ -0.04
PNKP-213ENST00000599543 REG1BP48304 166 aa14.81□□□□□ -0.04
PNKP-213ENST00000599543 RPL23AP62750 156 aaKnown RBP14.81□□□□□ -0.04
PNKP-213ENST00000599543 SLC35B1P78383 322 aa14.81□□□□□ -0.04
PNKP-213ENST00000599543 SFXN4Q6P4A7 337 aa14.81□□□□□ -0.04
PNKP-213ENST00000599543 SLC35E3Q7Z769 313 aa14.81□□□□□ -0.04
PNKP-213ENST00000599543 TPRA1Q86W33 373 aa14.81□□□□□ -0.04
PNKP-213ENST00000599543 FOXRED2Q8IWF2 684 aa14.81□□□□□ -0.04
PNKP-213ENST00000599543 PRR18Q8N4B5 295 aa14.81□□□□□ -0.04
PNKP-213ENST00000599543 LINC00482Q8N8I6 264 aa14.81□□□□□ -0.04
PNKP-213ENST00000599543 OR52M1Q8NGK5 317 aa14.81□□□□□ -0.04
PNKP-213ENST00000599543 OR13F1Q8NGS4 319 aa14.81□□□□□ -0.04
PNKP-213ENST00000599543 MRPS26Q9BYN8 205 aaKnown RBP14.81□□□□□ -0.04
PNKP-213ENST00000599543 GPR61Q9BZJ8 451 aa14.81□□□□□ -0.04
PNKP-213ENST00000599543 IGHV3-43A0A0B4J1X8 118 aa14.8□□□□□ -0.04
PNKP-213ENST00000599543 NCBP2LA6PVI3 153 aaKnown RBP14.8□□□□□ -0.04
PNKP-213ENST00000599543 NUDT19A8MXV4 375 aa14.8□□□□□ -0.04
PNKP-213ENST00000599543 C15orf65H3BRN8 121 aa14.8□□□□□ -0.04
PNKP-213ENST00000599543 ORC5O43913 435 aa14.8□□□□□ -0.04
PNKP-213ENST00000599543 IGHV3-43DP0DP04 118 aa14.8□□□□□ -0.04
PNKP-213ENST00000599543 IL3RAP26951 378 aa14.8□□□□□ -0.04
PNKP-213ENST00000599543 TMEM50BP56557 158 aa14.8□□□□□ -0.04
PNKP-213ENST00000599543 NCS1P62166 190 aa14.8□□□□□ -0.04
PNKP-213ENST00000599543 IZUMO1Q8IYV9 350 aa14.8□□□□□ -0.04
PNKP-213ENST00000599543 MRPL30Q8TCC3 161 aaKnown RBP14.8□□□□□ -0.04
PNKP-213ENST00000599543 DPF1Q92782 380 aa14.8□□□□□ -0.04
PNKP-213ENST00000599543 ARHGAP5-AS1Q96IT6 56 aa14.8□□□□□ -0.04
PNKP-213ENST00000599543 PLEKHJ1Q9NW61 149 aa14.8□□□□□ -0.04
PNKP-213ENST00000599543 GFOD1Q9NXC2 390 aa14.8□□□□□ -0.04
PNKP-213ENST00000599543 LINC00527Q9UJ94 153 aa14.8□□□□□ -0.04
PNKP-213ENST00000599543 RAB22AQ9UL26 194 aa14.8□□□□□ -0.04
PNKP-213ENST00000599543 A0A075B6Q4 140 aa14.79□□□□□ -0.04
PNKP-213ENST00000599543 IGHV3-72A0A0B4J1Y9 119 aa14.79□□□□□ -0.04
PNKP-213ENST00000599543 FOXI3A8MTJ6 420 aaPredicted RBP14.79□□□□□ -0.04
PNKP-213ENST00000599543 K7EIL1 84 aa14.79□□□□□ -0.04
PNKP-213ENST00000599543 IGHG2P01859 326 aa14.79□□□□□ -0.04
PNKP-213ENST00000599543 SLC6A1P30531 599 aa14.79□□□□□ -0.04
PNKP-213ENST00000599543 VBP1P61758 197 aa14.79□□□□□ -0.04
PNKP-213ENST00000599543 COL7A1Q02388 2944 aa14.79□□□□□ -0.04
PNKP-213ENST00000599543 EBI3Q14213 229 aa14.79□□□□□ -0.04
PNKP-213ENST00000599543 TIMM50Q3ZCQ8 353 aa14.79□□□□□ -0.04
PNKP-213ENST00000599543 IDNKQ5T6J7 187 aa14.79□□□□□ -0.04
PNKP-213ENST00000599543 ETV3LQ6ZN32 361 aa14.79□□□□□ -0.04
PNKP-213ENST00000599543 MRPL41Q8IXM3 137 aaKnown RBP14.79□□□□□ -0.04
PNKP-213ENST00000599543 FAM89BQ8N5H3 189 aa14.79□□□□□ -0.04
PNKP-213ENST00000599543 LINC00311Q8N616 119 aa14.79□□□□□ -0.04
PNKP-213ENST00000599543 COMMD1Q8N668 190 aa14.79□□□□□ -0.04
PNKP-213ENST00000599543 C8orf31Q8N9H6 132 aa14.79□□□□□ -0.04
PNKP-213ENST00000599543 OR5H6Q8NGV6 325 aa14.79□□□□□ -0.04
PNKP-213ENST00000599543 OR1L1Q8NH94 360 aa14.79□□□□□ -0.04
PNKP-213ENST00000599543 SETD6Q8TBK2 473 aa14.79□□□□□ -0.04
PNKP-213ENST00000599543 LGALS14Q8TCE9 139 aa14.79□□□□□ -0.04
PNKP-213ENST00000599543 PECRQ9BY49 303 aa14.79□□□□□ -0.04
PNKP-213ENST00000599543 CHMP1AQ9HD42 196 aaPredicted RBP14.79□□□□□ -0.04
PNKP-213ENST00000599543 RAB9BQ9NP90 201 aa14.79□□□□□ -0.04
PNKP-213ENST00000599543 AK3Q9UIJ7 227 aa14.79□□□□□ -0.04
PNKP-213ENST00000599543 C12orf77C9JDV5 145 aa14.78□□□□□ -0.04
PNKP-213ENST00000599543 TFAP2AP05549 437 aa14.78□□□□□ -0.04
PNKP-213ENST00000599543 RPS19P39019 145 aaKnown RBP14.78□□□□□ -0.04
PNKP-213ENST00000599543 THBS3P49746 956 aa14.78□□□□□ -0.04
PNKP-213ENST00000599543 PLAC9Q5JTB6 97 aa14.78□□□□□ -0.04
PNKP-213ENST00000599543 GPR107Q5VW38 600 aa14.78□□□□□ -0.04
PNKP-213ENST00000599543 C8orf86Q6ZUL3 223 aa14.78□□□□□ -0.04
PNKP-213ENST00000599543 TGIF2LXQ8IUE1 241 aa14.78□□□□□ -0.04
PNKP-213ENST00000599543 STPG2Q8N412 459 aa14.78□□□□□ -0.04
PNKP-213ENST00000599543 KLHL30-AS1Q8NEE0 82 aa14.78□□□□□ -0.04
PNKP-213ENST00000599543 OR2T10Q8NGZ9 312 aa14.78□□□□□ -0.04
PNKP-213ENST00000599543 EAF1Q96JC9 268 aaPredicted RBP14.78□□□□□ -0.04
PNKP-213ENST00000599543 ATG5Q9H1Y0 275 aa14.78□□□□□ -0.04
PNKP-213ENST00000599543 ZFP57Q9NU63 452 aa14.78□□□□□ -0.04
PNKP-213ENST00000599543 SPINT2O43291 252 aa14.77□□□□□ -0.05
PNKP-213ENST00000599543 GLAP06280 429 aa14.77□□□□□ -0.05
PNKP-213ENST00000599543 HOXD3P31249 432 aaPredicted RBP14.77□□□□□ -0.05
PNKP-213ENST00000599543 ALDH3B2P48448 385 aa14.77□□□□□ -0.05
PNKP-213ENST00000599543 SERPINB10P48595 397 aa14.77□□□□□ -0.05
PNKP-213ENST00000599543 KRTAP10-11P60412 298 aa14.77□□□□□ -0.05
PNKP-213ENST00000599543 EGFEM1PQ0D2K5 195 aa14.77□□□□□ -0.05
PNKP-213ENST00000599543 Q3ZCU0 254 aa14.77□□□□□ -0.05
PNKP-213ENST00000599543 OR56B1Q8NGI3 324 aa14.77□□□□□ -0.05
PNKP-213ENST00000599543 OR10V1Q8NGI7 309 aa14.77□□□□□ -0.05
PNKP-213ENST00000599543 RTN4IP1Q8WWV3 396 aaPredicted RBP14.77□□□□□ -0.05
PNKP-213ENST00000599543 LIN7CQ9NUP9 197 aaKnown RBP14.77□□□□□ -0.05
PNKP-213ENST00000599543 GNG12Q9UBI6 72 aa14.77□□□□□ -0.05
PNKP-213ENST00000599543 AP4M1O00189 453 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms