RNA–Protein interactions for RNA: ENST00000581631.1

SMCHD1-206, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 729 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-206ENST00000581631 CCDC12Q8WUD4 166 aaPredicted RBP0.65□□□□□ -2.31
SMCHD1-206ENST00000581631 CLDN23Q96B33 292 aa0.65□□□□□ -2.31
SMCHD1-206ENST00000581631 CYTH2Q99418 400 aa0.65□□□□□ -2.31
SMCHD1-206ENST00000581631 ACBD6Q9BR61 282 aa0.65□□□□□ -2.31
SMCHD1-206ENST00000581631 FAAP24Q9BTP7 215 aa0.65□□□□□ -2.31
SMCHD1-206ENST00000581631 MED10Q9BTT4 135 aa0.65□□□□□ -2.31
SMCHD1-206ENST00000581631 UGT2B28Q9BY64 529 aa0.65□□□□□ -2.31
SMCHD1-206ENST00000581631 HDHD2Q9H0R4 259 aa0.65□□□□□ -2.31
SMCHD1-206ENST00000581631 OR51E2Q9H255 320 aa0.65□□□□□ -2.31
SMCHD1-206ENST00000581631 TREM1Q9NP99 234 aa0.65□□□□□ -2.31
SMCHD1-206ENST00000581631 SPANXB1Q9NS25 103 aaPredicted RBP0.65□□□□□ -2.31
SMCHD1-206ENST00000581631 ZNHIT6Q9NWK9 470 aaKnown RBP0.65□□□□□ -2.31
SMCHD1-206ENST00000581631 MAT2BQ9NZL9 334 aa0.65□□□□□ -2.31
SMCHD1-206ENST00000581631 MRM2Q9UI43 246 aaKnown RBP0.65□□□□□ -2.31
SMCHD1-206ENST00000581631 SNX24Q9Y343 169 aa0.65□□□□□ -2.31
SMCHD1-206ENST00000581631 TRPM6Q9BX84 2022 aa0.65□□□□□ -2.31
SMCHD1-206ENST00000581631 DNMT1P26358 1616 aaKnown RBP0.64□□□□□ -2.31
SMCHD1-206ENST00000581631 IGHV3OR15-7A0A075B7D8 119 aa0.64□□□□□ -2.31
SMCHD1-206ENST00000581631 C9J4A7 227 aa0.64□□□□□ -2.31
SMCHD1-206ENST00000581631 TOR1AO14656 332 aa0.64□□□□□ -2.31
SMCHD1-206ENST00000581631 SYNGR1O43759 233 aa0.64□□□□□ -2.31
SMCHD1-206ENST00000581631 SCN2BO60939 215 aa0.64□□□□□ -2.31
SMCHD1-206ENST00000581631 SNAP29O95721 258 aa0.64□□□□□ -2.31
SMCHD1-206ENST00000581631 NPPAP01160 153 aa0.64□□□□□ -2.31
SMCHD1-206ENST00000581631 AKR1C4P17516 323 aa0.64□□□□□ -2.31
SMCHD1-206ENST00000581631 CRATP43155 626 aa0.64□□□□□ -2.31
SMCHD1-206ENST00000581631 CBX5P45973 191 aa0.64□□□□□ -2.31
SMCHD1-206ENST00000581631 DMTNQ08495 405 aa0.64□□□□□ -2.31
SMCHD1-206ENST00000581631 CLEC12BQ2HXU8 276 aa0.64□□□□□ -2.31
SMCHD1-206ENST00000581631 PDPK2PQ6A1A2 396 aa0.64□□□□□ -2.31
SMCHD1-206ENST00000581631 LGALS9CQ6DKI2 356 aa0.64□□□□□ -2.31
SMCHD1-206ENST00000581631 VN1R4Q7Z5H5 301 aa0.64□□□□□ -2.31
SMCHD1-206ENST00000581631 CRLF3Q8IUI8 442 aa0.64□□□□□ -2.31
SMCHD1-206ENST00000581631 FAM9CQ8IZT9 166 aa0.64□□□□□ -2.31
SMCHD1-206ENST00000581631 OR7G1Q8NGA0 311 aa0.64□□□□□ -2.31
SMCHD1-206ENST00000581631 OR52E4Q8NGH9 312 aa0.64□□□□□ -2.31
SMCHD1-206ENST00000581631 ERMNQ8TAM6 284 aa0.64□□□□□ -2.31
SMCHD1-206ENST00000581631 FAM45AQ8TCE6 357 aa0.64□□□□□ -2.31
SMCHD1-206ENST00000581631 GTF2H4Q92759 462 aa0.64□□□□□ -2.31
SMCHD1-206ENST00000581631 SERPINB11Q96P15 392 aa0.64□□□□□ -2.31
SMCHD1-206ENST00000581631 BCL2L14Q9BZR8 327 aa0.64□□□□□ -2.31
SMCHD1-206ENST00000581631 UBQLN4Q9NRR5 601 aa0.64□□□□□ -2.31
SMCHD1-206ENST00000581631 C1orf109Q9NX04 203 aa0.64□□□□□ -2.31
SMCHD1-206ENST00000581631 WASHC3Q9Y3C0 194 aa0.64□□□□□ -2.31
SMCHD1-206ENST00000581631 NYNRINQ9P2P1 1898 aaKnown RBP0.64□□□□□ -2.31
SMCHD1-206ENST00000581631 RTEL1-TNFRSF6BF6WH68 1400 aa0.64□□□□□ -2.31
SMCHD1-206ENST00000581631 ABCB11O95342 1321 aa0.64□□□□□ -2.31
SMCHD1-206ENST00000581631 ARHGAP32A7KAX9 2087 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 CHD5Q8TDI0 1954 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 MAP3K5Q99683 1374 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 RAB3GAP2Q9H2M9 1393 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 TRGV2A0A075B6R0 118 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 LINC00854A0A1B0GVQ3 168 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 MDFIC2A0A1B0GVS7 189 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 A0A1B0GX12 115 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 MKRN2OSH3BPM6 223 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 K7EQS6 105 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 SULT1C2O00338 296 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 SGCEO43556 437 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 GP1BAP07359 652 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 SLC35E2BP0CK96 405 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 PSMB6P28072 239 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 KDELR2P33947 212 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 ANP32AP39687 249 aaKnown RBP0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 HSPA13P48723 471 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 INPP1P49441 399 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 SULT1A2P50226 295 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 PSMD7P51665 324 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 RWDD2BP57060 319 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 MAGOHP61326 146 aaKnown RBP0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 ZNF117Q03924 483 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 SLAMF1Q13291 335 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 SKP2Q13309 424 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 XRCC4Q13426 336 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 MED21Q13503 144 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 FAM45BPQ6NSW5 357 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 PLEKHG7Q6ZR37 379 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 DOLPP1Q86YN1 238 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 SLC13A5Q86YT5 568 aaPredicted RBP0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 MNS1Q8NEH6 495 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 ATP6V1C2Q8NEY4 427 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 OR5D18Q8NGL1 313 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 SPACA4Q8TDM5 124 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 TMIGD2Q96BF3 282 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 CCDC127Q96BQ5 260 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 SMIM12Q96EX1 92 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 GPR22Q99680 433 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 UPK3BQ9BT76 320 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 NDEL1Q9GZM8 345 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 C11orf49Q9H6J7 331 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 SPACA1Q9HBV2 294 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 ASCL3Q9NQ33 180 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 NKIRAS1Q9NYS0 192 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 FBXL3Q9UKT7 428 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 PSMD13Q9UNM6 376 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 SBDSQ9Y3A5 250 aaKnown RBP eCLIP0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 PUS1Q9Y606 427 aaKnown RBP eCLIP0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 RAD50Q92878 1312 aa0.63□□□□□ -2.31
SMCHD1-206ENST00000581631 PTPRSQ13332 1948 aa0.62□□□□□ -2.31
SMCHD1-206ENST00000581631 IGLV3-9A0A075B6K5 115 aa0.62□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms