RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 CYB5R3P00387 301 aaPredicted RBP6.64□□□□□ -1.35
VPS39-213ENST00000570062 HBZP02008 142 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 SERPINE2P07093 398 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 SLC25A6P12236 298 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 RPS2P15880 293 aaKnown RBP6.64□□□□□ -1.35
VPS39-213ENST00000570062 EGR1P18146 543 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 F2RP25116 425 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 PSMB6P28072 239 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 LOXP28300 417 aaPredicted RBP6.64□□□□□ -1.35
VPS39-213ENST00000570062 ARHGDIBP52566 201 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 SUPT4H1P63272 117 aaKnown RBP6.64□□□□□ -1.35
VPS39-213ENST00000570062 BAMBIQ13145 260 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 SMCO1Q147U7 214 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 HERPUD1Q15011 391 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 TMEM155Q4W5P6 130 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 ZNF66Q6ZN08 573 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 ZNF695Q8IW36 515 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 ZNF645Q8N7E2 425 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 ZNF436-AS1Q8NC38 126 aaPredicted RBP6.64□□□□□ -1.35
VPS39-213ENST00000570062 SECTM1Q8WVN6 248 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 COQ2Q96H96 371 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 TMEM56Q96MV1 263 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 HSD17B10Q99714 261 aaKnown RBP6.64□□□□□ -1.35
VPS39-213ENST00000570062 AIFM2Q9BRQ8 373 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 CHIAQ9BZP6 476 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 TMEM222Q9H0R3 208 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 PIPOXQ9P0Z9 390 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 CLN8Q9UBY8 286 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 MAB21L2Q9Y586 359 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 LINC00312Q9Y6C7 94 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 TMEM56-RWDD3S4R434 201 aa6.64□□□□□ -1.35
VPS39-213ENST00000570062 IGKV1-6A0A0C4DH72 117 aa6.63□□□□□ -1.35
VPS39-213ENST00000570062 C13orf42A0A1B0GVH6 325 aa6.63□□□□□ -1.35
VPS39-213ENST00000570062 KIAA1324LA8MWY0 1029 aaPredicted RBP6.63□□□□□ -1.35
VPS39-213ENST00000570062 C15orf65H3BRN8 121 aa6.63□□□□□ -1.35
VPS39-213ENST00000570062 PHF1O43189 567 aaPredicted RBP6.63□□□□□ -1.35
VPS39-213ENST00000570062 OR2F2O95006 317 aa6.63□□□□□ -1.35
VPS39-213ENST00000570062 LY86O95711 162 aa6.63□□□□□ -1.35
VPS39-213ENST00000570062 IGFBP2P18065 325 aa6.63□□□□□ -1.35
VPS39-213ENST00000570062 VDAC1P21796 283 aa6.63□□□□□ -1.35
VPS39-213ENST00000570062 UCP1P25874 307 aa6.63□□□□□ -1.35
VPS39-213ENST00000570062 CD80P33681 288 aa6.63□□□□□ -1.35
VPS39-213ENST00000570062 GLIPR1P48060 266 aa6.63□□□□□ -1.35
VPS39-213ENST00000570062 EDDM3BP56851 147 aa6.63□□□□□ -1.35
VPS39-213ENST00000570062 H2BFSP57053 126 aa6.63□□□□□ -1.35
VPS39-213ENST00000570062 TAGLNQ01995 201 aaKnown RBP6.63□□□□□ -1.35
VPS39-213ENST00000570062 OR2F1Q13607 317 aa6.63□□□□□ -1.35
VPS39-213ENST00000570062 EDDM3AQ14507 147 aa6.63□□□□□ -1.35
VPS39-213ENST00000570062 TMEM187Q14656 261 aa6.63□□□□□ -1.35
VPS39-213ENST00000570062 SLC9A3R2Q15599 337 aa6.63□□□□□ -1.35
VPS39-213ENST00000570062 NDUFA5Q16718 116 aa6.63□□□□□ -1.35
VPS39-213ENST00000570062 C11orf87Q6NUJ2 197 aa6.63□□□□□ -1.35
VPS39-213ENST00000570062 TBC1D26Q86UD7 250 aa6.63□□□□□ -1.35
VPS39-213ENST00000570062 RTTNQ86VV8 2226 aa6.63□□□□□ -1.35
VPS39-213ENST00000570062 FAM219AQ8IW50 185 aa6.63□□□□□ -1.35
VPS39-213ENST00000570062 PRR18Q8N4B5 295 aa6.63□□□□□ -1.35
VPS39-213ENST00000570062 INO80EQ8NBZ0 244 aaPredicted RBP6.63□□□□□ -1.35
VPS39-213ENST00000570062 ZNRF1Q8ND25 227 aa6.63□□□□□ -1.35
VPS39-213ENST00000570062 MRGPRDQ8TDS7 321 aa6.63□□□□□ -1.35
VPS39-213ENST00000570062 ADTRPQ96IZ2 230 aa6.63□□□□□ -1.35
VPS39-213ENST00000570062 GAFA1Q96PS6 74 aa6.63□□□□□ -1.35
VPS39-213ENST00000570062 LIME1Q9H400 295 aa6.63□□□□□ -1.35
VPS39-213ENST00000570062 GNG12Q9UBI6 72 aa6.63□□□□□ -1.35
VPS39-213ENST00000570062 SLC25A10Q9UBX3 287 aaPredicted RBP6.63□□□□□ -1.35
VPS39-213ENST00000570062 MIOXQ9UGB7 285 aa6.63□□□□□ -1.35
VPS39-213ENST00000570062 HSPB11Q9Y547 144 aa6.63□□□□□ -1.35
VPS39-213ENST00000570062 BSNQ9UPA5 3926 aa6.63□□□□□ -1.35
VPS39-213ENST00000570062 PRRC2CQ9Y520 2896 aaKnown RBP6.63□□□□□ -1.35
VPS39-213ENST00000570062 IGHV3OR15-7A0A075B7D8 119 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 KRTAP4-8A0A0G2JLE6 195 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 A6NNC1 897 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 FAM25EA8MYX2 175 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 L7N2F9 121 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 TNFRSF13BO14836 293 aaPredicted RBP6.62□□□□□ -1.35
VPS39-213ENST00000570062 ADAM20O43506 726 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 GYPAP02724 150 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 RBP4P02753 201 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 OR5AC1P0C628 307 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 CGB3P0DN86 165 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 CGB7P0DN87 165 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 DAOP14920 347 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 PI3P19957 117 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 PVALBP20472 110 aaPredicted RBP6.62□□□□□ -1.35
VPS39-213ENST00000570062 KIR2DS2P43631 304 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 CEBPDP49716 269 aaPredicted RBP6.62□□□□□ -1.35
VPS39-213ENST00000570062 EIF5AP63241 154 aaKnown RBP6.62□□□□□ -1.35
VPS39-213ENST00000570062 CD300CQ08708 224 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 ZNF345Q14585 488 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 PHLDA2Q53GA4 152 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 THOC7Q6I9Y2 204 aaKnown RBP6.62□□□□□ -1.35
VPS39-213ENST00000570062 Q6ZPA2 131 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 ZNF818PQ6ZRF7 136 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 ACOT7LQ6ZUV0 252 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 ZNF767PQ75MW2 155 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 ZNF546Q86UE3 836 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 C8orf31Q8N9H6 132 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 DEFB108BQ8NET1 73 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 GLYATL2Q8WU03 294 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 PPP1R1CQ8WVI7 109 aa6.62□□□□□ -1.35
VPS39-213ENST00000570062 TNFRSF14Q92956 283 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms