RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 C1orf100Q5SVJ3 147 aa7.8□□□□□ -1.16
VPS39-205ENST00000562258 OR5M8Q8NGP6 311 aa7.8□□□□□ -1.16
VPS39-205ENST00000562258 R3HDM4Q96D70 268 aa7.8□□□□□ -1.16
VPS39-205ENST00000562258 RHOVQ96L33 236 aa7.8□□□□□ -1.16
VPS39-205ENST00000562258 PARP11Q9NR21 331 aa7.8□□□□□ -1.16
VPS39-205ENST00000562258 CFAP54Q96N23 3096 aa7.8□□□□□ -1.16
VPS39-205ENST00000562258 RAB29O14966 203 aa7.8□□□□□ -1.16
VPS39-205ENST00000562258 HLA-DQB1P01920 261 aa7.8□□□□□ -1.16
VPS39-205ENST00000562258 GAPDHP04406 335 aaKnown RBP7.8□□□□□ -1.16
VPS39-205ENST00000562258 SULT1A3P0DMM9 295 aa7.8□□□□□ -1.16
VPS39-205ENST00000562258 SULT1A4P0DMN0 295 aa7.8□□□□□ -1.16
VPS39-205ENST00000562258 RRASP10301 218 aa7.8□□□□□ -1.16
VPS39-205ENST00000562258 PF4V1P10720 104 aa7.8□□□□□ -1.16
VPS39-205ENST00000562258 ZNF14P17017 642 aaPredicted RBP7.8□□□□□ -1.16
VPS39-205ENST00000562258 CCDC144NLQ6NUI1 221 aa7.8□□□□□ -1.16
VPS39-205ENST00000562258 ALKAL2Q6UX46 152 aa7.8□□□□□ -1.16
VPS39-205ENST00000562258 Q6ZRG5 221 aa7.8□□□□□ -1.16
VPS39-205ENST00000562258 MYPOPQ86VE0 399 aaPredicted RBP7.8□□□□□ -1.16
VPS39-205ENST00000562258 RBM38Q9H0Z9 239 aaKnown RBP7.8□□□□□ -1.16
VPS39-205ENST00000562258 AKIP1Q9NQ31 210 aa7.8□□□□□ -1.16
VPS39-205ENST00000562258 PSENENQ9NZ42 101 aa7.8□□□□□ -1.16
VPS39-205ENST00000562258 STRAPQ9Y3F4 350 aaKnown RBP7.8□□□□□ -1.16
VPS39-205ENST00000562258 A6NNC1 897 aa7.8□□□□□ -1.16
VPS39-205ENST00000562258 I3L521 148 aa7.8□□□□□ -1.16
VPS39-205ENST00000562258 SLC25A17O43808 307 aa7.8□□□□□ -1.16
VPS39-205ENST00000562258 TSPAN15O95858 294 aa7.8□□□□□ -1.16
VPS39-205ENST00000562258 LYG2Q86SG7 212 aa7.8□□□□□ -1.16
VPS39-205ENST00000562258 NOXA1Q86UR1 476 aa7.8□□□□□ -1.16
VPS39-205ENST00000562258 BVESQ8NE79 360 aa7.8□□□□□ -1.16
VPS39-205ENST00000562258 FBLIM1Q8WUP2 373 aa7.8□□□□□ -1.16
VPS39-205ENST00000562258 TMEM56Q96MV1 263 aa7.8□□□□□ -1.16
VPS39-205ENST00000562258 HES4Q9HCC6 221 aa7.8□□□□□ -1.16
VPS39-205ENST00000562258 C2CD3Q4AC94 2353 aa7.8□□□□□ -1.16
VPS39-205ENST00000562258 A0A0A6YYJ9 748 aa7.79□□□□□ -1.16
VPS39-205ENST00000562258 OR13C7P0DN81 318 aa7.79□□□□□ -1.16
VPS39-205ENST00000562258 ACSM6Q6P461 480 aa7.79□□□□□ -1.16
VPS39-205ENST00000562258 OR13A1Q8NGR1 328 aa7.79□□□□□ -1.16
VPS39-205ENST00000562258 PPP1R1CQ8WVI7 109 aa7.79□□□□□ -1.16
VPS39-205ENST00000562258 DEDD2Q8WXF8 326 aa7.79□□□□□ -1.16
VPS39-205ENST00000562258 SLC25A38Q96DW6 304 aa7.79□□□□□ -1.16
VPS39-205ENST00000562258 Q96M66 194 aa7.79□□□□□ -1.16
VPS39-205ENST00000562258 OR5B12Q96R08 314 aa7.79□□□□□ -1.16
VPS39-205ENST00000562258 MBD2Q9UBB5 411 aa7.79□□□□□ -1.16
VPS39-205ENST00000562258 DOCK11Q5JSL3 2073 aa7.79□□□□□ -1.16
VPS39-205ENST00000562258 TNRC6AQ8NDV7 1962 aaKnown RBP7.79□□□□□ -1.16
VPS39-205ENST00000562258 IGHV3-35A0A0C4DH35 117 aa7.79□□□□□ -1.16
VPS39-205ENST00000562258 OR5H14A6NHG9 310 aa7.79□□□□□ -1.16
VPS39-205ENST00000562258 F8VVB4 439 aa7.79□□□□□ -1.16
VPS39-205ENST00000562258 F8VWA3 439 aa7.79□□□□□ -1.16
VPS39-205ENST00000562258 LGALS7P47929 136 aa7.79□□□□□ -1.16
VPS39-205ENST00000562258 SCAND1P57086 179 aa7.79□□□□□ -1.16
VPS39-205ENST00000562258 RPS11P62280 158 aaKnown RBP eCLIP7.79□□□□□ -1.16
VPS39-205ENST00000562258 FAM90A1Q86YD7 464 aa7.79□□□□□ -1.16
VPS39-205ENST00000562258 CDH26Q8IXH8 852 aa7.79□□□□□ -1.16
VPS39-205ENST00000562258 OR4A4PQ8NGN8 299 aa7.79□□□□□ -1.16
VPS39-205ENST00000562258 FAM213BQ8TBF2 198 aa7.79□□□□□ -1.16
VPS39-205ENST00000562258 ZNF649Q9BS31 505 aa7.79□□□□□ -1.16
VPS39-205ENST00000562258 RSRP1Q9BUV0 290 aa7.79□□□□□ -1.16
VPS39-205ENST00000562258 HRH4Q9H3N8 390 aa7.79□□□□□ -1.16
VPS39-205ENST00000562258 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.79□□□□□ -1.16
VPS39-205ENST00000562258 IFNL4K9M1U5 179 aa7.79□□□□□ -1.16
VPS39-205ENST00000562258 IGKV3-15P01624 115 aa7.79□□□□□ -1.16
VPS39-205ENST00000562258 RNF144BQ7Z419 303 aa7.79□□□□□ -1.16
VPS39-205ENST00000562258 POM121Q96HA1 1249 aa7.79□□□□□ -1.16
VPS39-205ENST00000562258 TSNAXQ99598 290 aaKnown RBP7.79□□□□□ -1.16
VPS39-205ENST00000562258 CLEC7AQ9BXN2 247 aa7.79□□□□□ -1.16
VPS39-205ENST00000562258 V9GYS6 101 aa7.79□□□□□ -1.16
VPS39-205ENST00000562258 TRAV40A0A0B4J280 105 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 DKK1O94907 266 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 PSMB6P28072 239 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 UNC119Q13432 240 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 FHL1Q13642 323 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 IZUMO4Q1ZYL8 232 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 ZNF674Q2M3X9 581 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 UNQ9370/PRO34162Q6UXP9 181 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 ACOT7LQ6ZUV0 252 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 VKORC1L1Q8N0U8 176 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 WDR89Q96FK6 387 aaPredicted RBP7.78□□□□□ -1.16
VPS39-205ENST00000562258 MS4A10Q96PG2 267 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 NRIP2Q9BQI9 281 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 OR51I2Q9H344 312 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 HIF1ANQ9NWT6 349 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 DSCAMO60469 2012 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 C12orf77C9JDV5 145 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 TMEM127O75204 238 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 METTL15P1P0C7V9 234 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 CHATP28329 748 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 AKR1D1P51857 326 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 POLR2GP62487 172 aaKnown RBP eCLIP7.78□□□□□ -1.16
VPS39-205ENST00000562258 BRD3OSQ6XYD6 125 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 ZNF561Q8N587 486 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 OR9G1Q8NH87 305 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 C14orf79Q96F83 325 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 NAA60Q9H7X0 242 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 IDI2-AS1Q9NZ38 188 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 M0QZ24 198 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 NDUFB6O95139 128 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 SPNP16150 400 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 HCP5Q6MZN7 132 aa7.78□□□□□ -1.16
VPS39-205ENST00000562258 CD200R1LQ6Q8B3 271 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms