RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 MRPL30Q8TCC3 161 aaKnown RBP9.06□□□□□ -0.96
USP3-220ENST00000561381 MYOZ3Q8TDC0 251 aa9.06□□□□□ -0.96
USP3-220ENST00000561381 OR5B12Q96R08 314 aa9.06□□□□□ -0.96
USP3-220ENST00000561381 ASCL2Q99929 193 aa9.06□□□□□ -0.96
USP3-220ENST00000561381 ABHD14AQ9BUJ0 271 aa9.06□□□□□ -0.96
USP3-220ENST00000561381 GNB4Q9HAV0 340 aa9.06□□□□□ -0.96
USP3-220ENST00000561381 RAB9BQ9NP90 201 aa9.06□□□□□ -0.96
USP3-220ENST00000561381 ZMAT5Q9UDW3 170 aaKnown RBP9.06□□□□□ -0.96
USP3-220ENST00000561381 IGHV7-81A0A0B4J1V7 117 aa9.05□□□□□ -0.96
USP3-220ENST00000561381 FAM90A10PA6NDY2 464 aa9.05□□□□□ -0.96
USP3-220ENST00000561381 FAM90A7PA6NKC0 464 aa9.05□□□□□ -0.96
USP3-220ENST00000561381 FAM90A23PA8MXZ1 464 aa9.05□□□□□ -0.96
USP3-220ENST00000561381 PDCD6O75340 191 aa9.05□□□□□ -0.96
USP3-220ENST00000561381 GNAO1P09471 354 aa9.05□□□□□ -0.96
USP3-220ENST00000561381 CELP19835 753 aa9.05□□□□□ -0.96
USP3-220ENST00000561381 PPIFP30405 207 aaKnown RBP9.05□□□□□ -0.96
USP3-220ENST00000561381 MED21Q13503 144 aa9.05□□□□□ -0.96
USP3-220ENST00000561381 C6orf141Q5SZD1 244 aa9.05□□□□□ -0.96
USP3-220ENST00000561381 TTC23Q5W5X9 447 aa9.05□□□□□ -0.96
USP3-220ENST00000561381 OR10K2Q6IF99 312 aa9.05□□□□□ -0.96
USP3-220ENST00000561381 TRAT1Q6PIZ9 186 aa9.05□□□□□ -0.96
USP3-220ENST00000561381 CDH26Q8IXH8 852 aa9.05□□□□□ -0.96
USP3-220ENST00000561381 NABP2Q9BQ15 211 aa9.05□□□□□ -0.96
USP3-220ENST00000561381 ANKRD60Q9BZ19 345 aa9.05□□□□□ -0.96
USP3-220ENST00000561381 PARP11Q9NR21 331 aa9.05□□□□□ -0.96
USP3-220ENST00000561381 KCNIP1Q9NZI2 227 aa9.05□□□□□ -0.96
USP3-220ENST00000561381 ZNF580Q9UK33 172 aa9.05□□□□□ -0.96
USP3-220ENST00000561381 U3KQK5 164 aa9.05□□□□□ -0.96
USP3-220ENST00000561381 EFCAB10A6NFE3 127 aa9.04□□□□□ -0.96
USP3-220ENST00000561381 I3L521 148 aa9.04□□□□□ -0.96
USP3-220ENST00000561381 NBR2O15453 112 aa9.04□□□□□ -0.96
USP3-220ENST00000561381 CA11O75493 328 aa9.04□□□□□ -0.96
USP3-220ENST00000561381 GLAP06280 429 aa9.04□□□□□ -0.96
USP3-220ENST00000561381 NHLRC4P0CG21 123 aaPredicted RBP9.04□□□□□ -0.96
USP3-220ENST00000561381 BLVRBP30043 206 aaPredicted RBP9.04□□□□□ -0.96
USP3-220ENST00000561381 TAS2R43P59537 309 aa9.04□□□□□ -0.96
USP3-220ENST00000561381 GNB1P62873 340 aa9.04□□□□□ -0.96
USP3-220ENST00000561381 NDPQ00604 133 aa9.04□□□□□ -0.96
USP3-220ENST00000561381 FAM27D1Q5T7N8 215 aa9.04□□□□□ -0.96
USP3-220ENST00000561381 AHSA2Q719I0 299 aa9.04□□□□□ -0.96
USP3-220ENST00000561381 DHRSXQ8N5I4 330 aa9.04□□□□□ -0.96
USP3-220ENST00000561381 ZNF491Q8N8L2 437 aa9.04□□□□□ -0.96
USP3-220ENST00000561381 SETD9Q8NE22 299 aa9.04□□□□□ -0.96
USP3-220ENST00000561381 OR1N2Q8NGR9 330 aa9.04□□□□□ -0.96
USP3-220ENST00000561381 SULT4A1Q9BR01 284 aa9.04□□□□□ -0.96
USP3-220ENST00000561381 ZNF251Q9BRH9 671 aa9.04□□□□□ -0.96
USP3-220ENST00000561381 ALX4Q9H161 411 aaPredicted RBP9.04□□□□□ -0.96
USP3-220ENST00000561381 OR51J1Q9H342 316 aa9.04□□□□□ -0.96
USP3-220ENST00000561381 KCNK15Q9H427 330 aa9.04□□□□□ -0.96
USP3-220ENST00000561381 JPT1Q9UK76 154 aa9.04□□□□□ -0.96
USP3-220ENST00000561381 TENM3Q9P273 2699 aa9.04□□□□□ -0.96
USP3-220ENST00000561381 SORL1Q92673 2214 aa9.03□□□□□ -0.96
USP3-220ENST00000561381 SAA2-SAA4A0A096LPE2 208 aa9.03□□□□□ -0.96
USP3-220ENST00000561381 TRAV41A0A0B4J266 112 aa9.03□□□□□ -0.96
USP3-220ENST00000561381 YPEL1O60688 119 aa9.03□□□□□ -0.96
USP3-220ENST00000561381 IGLV1-40P01703 118 aa9.03□□□□□ -0.96
USP3-220ENST00000561381 HLA-DRB1P01911 266 aa9.03□□□□□ -0.96
USP3-220ENST00000561381 SAA2P0DJI9 122 aaPredicted RBP9.03□□□□□ -0.96
USP3-220ENST00000561381 OR5H8P0DN80 308 aa9.03□□□□□ -0.96
USP3-220ENST00000561381 CHATP28329 748 aa9.03□□□□□ -0.96
USP3-220ENST00000561381 WNT4P56705 351 aa9.03□□□□□ -0.96
USP3-220ENST00000561381 HTD2P86397 168 aa9.03□□□□□ -0.96
USP3-220ENST00000561381 HMGN3Q15651 99 aa9.03□□□□□ -0.96
USP3-220ENST00000561381 C5orf64Q2M2E5 130 aa9.03□□□□□ -0.96
USP3-220ENST00000561381 TMEM65Q6PI78 240 aa9.03□□□□□ -0.96
USP3-220ENST00000561381 ZNF833PQ6ZTB9 187 aa9.03□□□□□ -0.96
USP3-220ENST00000561381 C6orf201Q7Z4U5 140 aa9.03□□□□□ -0.96
USP3-220ENST00000561381 NKAIN3Q8N8D7 197 aa9.03□□□□□ -0.96
USP3-220ENST00000561381 CASTOR1Q8WTX7 329 aa9.03□□□□□ -0.96
USP3-220ENST00000561381 UBE2E2Q96LR5 201 aa9.03□□□□□ -0.96
USP3-220ENST00000561381 YPEL2Q96QA6 119 aa9.03□□□□□ -0.96
USP3-220ENST00000561381 UQCC2Q9BRT2 126 aa9.03□□□□□ -0.96
USP3-220ENST00000561381 FAAP24Q9BTP7 215 aa9.03□□□□□ -0.96
USP3-220ENST00000561381 KRTAP4-8Q9BYQ9 185 aa9.03□□□□□ -0.96
USP3-220ENST00000561381 PARP12Q9H0J9 701 aaKnown RBP9.03□□□□□ -0.96
USP3-220ENST00000561381 IFI27L2Q9H2X8 130 aa9.03□□□□□ -0.96
USP3-220ENST00000561381 PSORS1C1Q9UIG5 152 aa9.03□□□□□ -0.96
USP3-220ENST00000561381 VSIG4Q9Y279 399 aa9.03□□□□□ -0.96
USP3-220ENST00000561381 ZNF256Q9Y2P7 627 aaPredicted RBP9.03□□□□□ -0.96
USP3-220ENST00000561381 FBXO7Q9Y3I1 522 aa9.03□□□□□ -0.96
USP3-220ENST00000561381 HUWE1Q7Z6Z7 4374 aaKnown RBP9.03□□□□□ -0.96
USP3-220ENST00000561381 MYL12BO14950 172 aa9.02□□□□□ -0.97
USP3-220ENST00000561381 SOX15O60248 233 aa9.02□□□□□ -0.97
USP3-220ENST00000561381 LY86O95711 162 aa9.02□□□□□ -0.97
USP3-220ENST00000561381 CD1AP06126 327 aa9.02□□□□□ -0.97
USP3-220ENST00000561381 OR8U8P0C7N1 319 aa9.02□□□□□ -0.97
USP3-220ENST00000561381 HTR2CP28335 458 aa9.02□□□□□ -0.97
USP3-220ENST00000561381 RAB9AP51151 201 aa9.02□□□□□ -0.97
USP3-220ENST00000561381 ZNF616Q08AN1 781 aa9.02□□□□□ -0.97
USP3-220ENST00000561381 RPL39P5Q59GN2 51 aa9.02□□□□□ -0.97
USP3-220ENST00000561381 LIN54Q6MZP7 749 aa9.02□□□□□ -0.97
USP3-220ENST00000561381 FAM131AQ6UXB0 335 aa9.02□□□□□ -0.97
USP3-220ENST00000561381 ZNF554Q86TJ5 538 aa9.02□□□□□ -0.97
USP3-220ENST00000561381 LRRTM1Q86UE6 522 aa9.02□□□□□ -0.97
USP3-220ENST00000561381 NANOGP1Q8N7R0 232 aa9.02□□□□□ -0.97
USP3-220ENST00000561381 MINDY2Q8NBR6 621 aa9.02□□□□□ -0.97
USP3-220ENST00000561381 BPIFB6Q8NFQ5 453 aa9.02□□□□□ -0.97
USP3-220ENST00000561381 NPBQ8NG41 125 aa9.02□□□□□ -0.97
USP3-220ENST00000561381 OR2AK2Q8NG84 335 aa9.02□□□□□ -0.97
USP3-220ENST00000561381 FBLIM1Q8WUP2 373 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 86.3 ms