RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, human

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RTF1-204	ENST00000558117	MFF	Q9GZY8	342 aa		4.09	□□□□□ -1.75
RTF1-204	ENST00000558117	ADGRL4	Q9HBW9	690 aa		4.09	□□□□□ -1.75
RTF1-204	ENST00000558117	SAR1A	Q9NR31	198 aa		4.09	□□□□□ -1.75
RTF1-204	ENST00000558117	UBQLN4	Q9NRR5	601 aa		4.09	□□□□□ -1.75
RTF1-204	ENST00000558117	ADA2	Q9NZK5	511 aa		4.09	□□□□□ -1.75
RTF1-204	ENST00000558117	ABCD2	Q9UBJ2	740 aa		4.09	□□□□□ -1.75
RTF1-204	ENST00000558117	CRCT1	Q9UGL9	99 aa		4.09	□□□□□ -1.75
RTF1-204	ENST00000558117	TMCO1	Q9UM00	188 aa		4.09	□□□□□ -1.75
RTF1-204	ENST00000558117	VSIG4	Q9Y279	399 aa		4.09	□□□□□ -1.75
RTF1-204	ENST00000558117	TRAPPC4	Q9Y296	219 aa		4.09	□□□□□ -1.75
RTF1-204	ENST00000558117	KPTN	Q9Y664	436 aa		4.09	□□□□□ -1.75
RTF1-204	ENST00000558117	ZNF780B	Q9Y6R6	833 aa		4.09	□□□□□ -1.75
RTF1-204	ENST00000558117	FAT3	Q8TDW7	4589 aa		4.09	□□□□□ -1.75
RTF1-204	ENST00000558117	PRSS37	A4D1T9	235 aa		4.08	□□□□□ -1.76
RTF1-204	ENST00000558117	TRPC5OS	A6NMA1	111 aa		4.08	□□□□□ -1.76
RTF1-204	ENST00000558117	FOXI3	A8MTJ6	420 aa	Predicted RBP	4.08	□□□□□ -1.76
RTF1-204	ENST00000558117	RAB29	O14966	203 aa		4.08	□□□□□ -1.76
RTF1-204	ENST00000558117	UBD	O15205	165 aa		4.08	□□□□□ -1.76
RTF1-204	ENST00000558117	EIF1B	O60739	113 aa	Known RBP	4.08	□□□□□ -1.76
RTF1-204	ENST00000558117	CCDC22	O60826	627 aa		4.08	□□□□□ -1.76
RTF1-204	ENST00000558117	FCN3	O75636	299 aa		4.08	□□□□□ -1.76
RTF1-204	ENST00000558117	DCTN3	O75935	186 aa		4.08	□□□□□ -1.76
RTF1-204	ENST00000558117	SERPINA5	P05154	406 aa		4.08	□□□□□ -1.76
RTF1-204	ENST00000558117	KLK1	P06870	262 aa		4.08	□□□□□ -1.76
RTF1-204	ENST00000558117	MPV17	P39210	176 aa		4.08	□□□□□ -1.76
RTF1-204	ENST00000558117	VHL	P40337	213 aa		4.08	□□□□□ -1.76
RTF1-204	ENST00000558117	INSL3	P51460	131 aa		4.08	□□□□□ -1.76
RTF1-204	ENST00000558117	ARHGDIA	P52565	204 aa		4.08	□□□□□ -1.76
RTF1-204	ENST00000558117	PMS2P3	Q13401	168 aa		4.08	□□□□□ -1.76
RTF1-204	ENST00000558117	DUSP7	Q16829	419 aa		4.08	□□□□□ -1.76
RTF1-204	ENST00000558117	C17orf58	Q2M2W7	97 aa		4.08	□□□□□ -1.76
RTF1-204	ENST00000558117	CEACAM16	Q2WEN9	425 aa		4.08	□□□□□ -1.76
RTF1-204	ENST00000558117	RNF212	Q495C1	297 aa		4.08	□□□□□ -1.76
RTF1-204	ENST00000558117	FAM201A	Q5SY85	155 aa		4.08	□□□□□ -1.76
RTF1-204	ENST00000558117	OR8G2P	Q6IF36	304 aa		4.08	□□□□□ -1.76
RTF1-204	ENST00000558117	LRRC74B	Q6ZQY2	392 aa		4.08	□□□□□ -1.76
RTF1-204	ENST00000558117	PRSS48	Q7RTY5	328 aa		4.08	□□□□□ -1.76
RTF1-204	ENST00000558117	SLC26A10	Q8NG04	563 aa		4.08	□□□□□ -1.76
RTF1-204	ENST00000558117	CDC26	Q8NHZ8	85 aa		4.08	□□□□□ -1.76
RTF1-204	ENST00000558117	FNDC8	Q8TC99	324 aa		4.08	□□□□□ -1.76
RTF1-204	ENST00000558117	TM4SF18	Q96CE8	201 aa		4.08	□□□□□ -1.76
RTF1-204	ENST00000558117	EBPL	Q9BY08	206 aa		4.08	□□□□□ -1.76
RTF1-204	ENST00000558117	OR11A1	Q9GZK7	315 aa		4.08	□□□□□ -1.76
RTF1-204	ENST00000558117	MEPE	Q9NQ76	525 aa	Predicted RBP	4.08	□□□□□ -1.76
RTF1-204	ENST00000558117	FLVCR2	Q9UPI3	526 aa		4.08	□□□□□ -1.76
RTF1-204	ENST00000558117	TRAV6	A0A075B6T7	132 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	IGLV1-36	A0A0B4J1U3	117 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117		A6NDX4	124 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	C11orf98	E9PRG8	122 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	SIRPB1	O00241	398 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	UPK1A	O00322	258 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	HSD17B6	O14756	317 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	AIM2	O14862	343 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	OR10H3	O60404	316 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	LYPD3	O95274	346 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	CYB5R3	P00387	301 aa	Predicted RBP	4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	KRTAP1-4	P0C5Y4	121 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	COX4I1	P13073	169 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	PMEL	P40967	661 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	NPBWR2	P48146	333 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	CX3CR1	P49238	355 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	ERF	P50548	548 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	UBE2E1	P51965	193 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	NCALD	P61601	193 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	RPL38	P63173	70 aa	Known RBP	4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	SLC35A1	P78382	337 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	SCRN3	Q0VDG4	424 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	ST3GAL3	Q11203	375 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	VAMP3	Q15836	100 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	DGUOK	Q16854	277 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	IMPG1	Q17R60	797 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117		Q1RN00	199 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	SLC22A6	Q4U2R8	563 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	CDKL4	Q5MAI5	379 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	LINC00242	Q5T6M2	205 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	FAM122B	Q7Z309	247 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	APRG1	Q8IVJ8	170 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	FAM71E2	Q8N5Q1	922 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	KRTCAP2	Q8N6L1	136 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	CD177	Q8N6Q3	437 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117		Q8N7P7	452 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	OR9I1	Q8NGQ6	314 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	OR5W2	Q8NH69	310 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	TEX37	Q96LM6	180 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	RNF2	Q99496	336 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	ATP5S	Q99766	215 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	BCL2L14	Q9BZR8	327 aa		4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	POLR3H	Q9Y535	204 aa	Predicted RBP	4.07	□□□□□ -1.76
RTF1-204	ENST00000558117	TRAV9-2	A0A087WT02	112 aa		4.06	□□□□□ -1.76
RTF1-204	ENST00000558117		M0R3G1	203 aa		4.06	□□□□□ -1.76
RTF1-204	ENST00000558117	NDUFS6	O75380	124 aa	Known RBP	4.06	□□□□□ -1.76
RTF1-204	ENST00000558117	UGT2B17	O75795	530 aa		4.06	□□□□□ -1.76
RTF1-204	ENST00000558117	KBTBD11	O94819	623 aa		4.06	□□□□□ -1.76
RTF1-204	ENST00000558117	SEMA3D	O95025	777 aa		4.06	□□□□□ -1.76
RTF1-204	ENST00000558117	KCNK2	O95069	426 aa		4.06	□□□□□ -1.76
RTF1-204	ENST00000558117	SNAP29	O95721	258 aa		4.06	□□□□□ -1.76
RTF1-204	ENST00000558117	RAB36	O95755	333 aa		4.06	□□□□□ -1.76
RTF1-204	ENST00000558117	IL12A	P29459	219 aa		4.06	□□□□□ -1.76
RTF1-204	ENST00000558117	RGS6	P49758	472 aa		4.06	□□□□□ -1.76
RTF1-204	ENST00000558117	RAB13	P51153	203 aa		4.06	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 45 ms