RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 PLA2G7Q13093 441 aa12.11□□□□□ -0.47
CPSF1-208ENST00000532560 HACD4Q5VWC8 232 aa12.11□□□□□ -0.47
CPSF1-208ENST00000532560 CCDC144NLQ6NUI1 221 aa12.11□□□□□ -0.47
CPSF1-208ENST00000532560 MZT2BQ6NZ67 158 aa12.11□□□□□ -0.47
CPSF1-208ENST00000532560 Q6ZSV7 163 aa12.11□□□□□ -0.47
CPSF1-208ENST00000532560 MOB1BQ7L9L4 216 aa12.11□□□□□ -0.47
CPSF1-208ENST00000532560 LINC00311Q8N616 119 aa12.11□□□□□ -0.47
CPSF1-208ENST00000532560 OR1L1Q8NH94 360 aa12.11□□□□□ -0.47
CPSF1-208ENST00000532560 UBALD1Q8TB05 177 aa12.11□□□□□ -0.47
CPSF1-208ENST00000532560 LEAP2Q969E1 77 aa12.11□□□□□ -0.47
CPSF1-208ENST00000532560 PTX4Q96A99 478 aa12.11□□□□□ -0.47
CPSF1-208ENST00000532560 RIMS4Q9H426 269 aaPredicted RBP12.11□□□□□ -0.47
CPSF1-208ENST00000532560 TAF9BQ9HBM6 251 aa12.11□□□□□ -0.47
CPSF1-208ENST00000532560 KCNIP1Q9NZI2 227 aa12.11□□□□□ -0.47
CPSF1-208ENST00000532560 PITPNC1Q9UKF7 332 aa12.11□□□□□ -0.47
CPSF1-208ENST00000532560 TRBV6-6A0A0A6YYG2 114 aa12.1□□□□□ -0.47
CPSF1-208ENST00000532560 A0A0B4J203 849 aa12.1□□□□□ -0.47
CPSF1-208ENST00000532560 CLPSL1A2RUU4 121 aa12.1□□□□□ -0.47
CPSF1-208ENST00000532560 SMIM30A4D0T7 59 aa12.1□□□□□ -0.47
CPSF1-208ENST00000532560 A6NDX4 124 aa12.1□□□□□ -0.47
CPSF1-208ENST00000532560 TSPAN9O75954 239 aa12.1□□□□□ -0.47
CPSF1-208ENST00000532560 RAB13P51153 203 aa12.1□□□□□ -0.47
CPSF1-208ENST00000532560 EFNB2P52799 333 aa12.1□□□□□ -0.47
CPSF1-208ENST00000532560 TMEM50BP56557 158 aa12.1□□□□□ -0.47
CPSF1-208ENST00000532560 MADCAM1Q13477 382 aa12.1□□□□□ -0.47
CPSF1-208ENST00000532560 HMGN3Q15651 99 aa12.1□□□□□ -0.47
CPSF1-208ENST00000532560 SFXN4Q6P4A7 337 aa12.1□□□□□ -0.47
CPSF1-208ENST00000532560 ZNF880Q6PDB4 577 aa12.1□□□□□ -0.47
CPSF1-208ENST00000532560 OR10X1Q8NGY0 326 aa12.1□□□□□ -0.47
CPSF1-208ENST00000532560 TOMM40LQ969M1 308 aa12.1□□□□□ -0.47
CPSF1-208ENST00000532560 RPEQ96AT9 228 aa12.1□□□□□ -0.47
CPSF1-208ENST00000532560 ZNF747Q9BV97 191 aa12.1□□□□□ -0.47
CPSF1-208ENST00000532560 PECRQ9BY49 303 aa12.1□□□□□ -0.47
CPSF1-208ENST00000532560 C16orf95Q9H693 158 aa12.1□□□□□ -0.47
CPSF1-208ENST00000532560 RANBP3Q9H6Z4 567 aaPredicted RBP12.1□□□□□ -0.47
CPSF1-208ENST00000532560 GNG12Q9UBI6 72 aa12.1□□□□□ -0.47
CPSF1-208ENST00000532560 AK3Q9UIJ7 227 aa12.1□□□□□ -0.47
CPSF1-208ENST00000532560 TENM1Q9UKZ4 2725 aa12.1□□□□□ -0.47
CPSF1-208ENST00000532560 IGHV3-43A0A0B4J1X8 118 aa12.09□□□□□ -0.47
CPSF1-208ENST00000532560 IGHV3-43DP0DP04 118 aa12.09□□□□□ -0.47
CPSF1-208ENST00000532560 SLC2A2P11168 524 aaPredicted RBP12.09□□□□□ -0.47
CPSF1-208ENST00000532560 SPNP16150 400 aa12.09□□□□□ -0.47
CPSF1-208ENST00000532560 BRS3P32247 399 aa12.09□□□□□ -0.47
CPSF1-208ENST00000532560 MNDAP41218 407 aa12.09□□□□□ -0.47
CPSF1-208ENST00000532560 PYDC2Q56P42 97 aa12.09□□□□□ -0.47
CPSF1-208ENST00000532560 PLAC9Q5JTB6 97 aa12.09□□□□□ -0.47
CPSF1-208ENST00000532560 TRIQKQ629K1 86 aa12.09□□□□□ -0.47
CPSF1-208ENST00000532560 OLFML2AQ68BL7 652 aa12.09□□□□□ -0.47
CPSF1-208ENST00000532560 Q6ZPA2 131 aa12.09□□□□□ -0.47
CPSF1-208ENST00000532560 Q6ZTK2 550 aa12.09□□□□□ -0.47
CPSF1-208ENST00000532560 NRARPQ7Z6K4 114 aa12.09□□□□□ -0.47
CPSF1-208ENST00000532560 PRR18Q8N4B5 295 aa12.09□□□□□ -0.47
CPSF1-208ENST00000532560 ZNF439Q8NDP4 499 aa12.09□□□□□ -0.47
CPSF1-208ENST00000532560 LINC01006Q8NI28 216 aa12.09□□□□□ -0.47
CPSF1-208ENST00000532560 ARHGAP5-AS1Q96IT6 56 aa12.09□□□□□ -0.47
CPSF1-208ENST00000532560 OCSTAMPQ9BR26 566 aa12.09□□□□□ -0.47
CPSF1-208ENST00000532560 NPFFR1Q9GZQ6 430 aa12.09□□□□□ -0.47
CPSF1-208ENST00000532560 CHMP1AQ9HD42 196 aaPredicted RBP12.09□□□□□ -0.47
CPSF1-208ENST00000532560 C12orf4Q9NQ89 552 aa12.09□□□□□ -0.47
CPSF1-208ENST00000532560 JPT1Q9UK76 154 aa12.09□□□□□ -0.47
CPSF1-208ENST00000532560 A0A1W2PPE3 182 aa12.08□□□□□ -0.48
CPSF1-208ENST00000532560 HMX3A6NHT5 357 aa12.08□□□□□ -0.48
CPSF1-208ENST00000532560 RAB27BO00194 218 aa12.08□□□□□ -0.48
CPSF1-208ENST00000532560 ATP6V1G1O75348 118 aa12.08□□□□□ -0.48
CPSF1-208ENST00000532560 CCNKO75909 580 aa12.08□□□□□ -0.48
CPSF1-208ENST00000532560 CLEC2LP0C7M8 214 aa12.08□□□□□ -0.48
CPSF1-208ENST00000532560 IL3RAP26951 378 aa12.08□□□□□ -0.48
CPSF1-208ENST00000532560 TALDO1P37837 337 aa12.08□□□□□ -0.48
CPSF1-208ENST00000532560 RAB7AP51149 207 aa12.08□□□□□ -0.48
CPSF1-208ENST00000532560 HTD2P86397 168 aa12.08□□□□□ -0.48
CPSF1-208ENST00000532560 BAK1Q16611 211 aa12.08□□□□□ -0.48
CPSF1-208ENST00000532560 NDUFA5Q16718 116 aa12.08□□□□□ -0.48
CPSF1-208ENST00000532560 SLC25A48Q6ZT89 311 aaKnown RBP12.08□□□□□ -0.48
CPSF1-208ENST00000532560 TMEM219Q86XT9 240 aa12.08□□□□□ -0.48
CPSF1-208ENST00000532560 OR4C13Q8NGP0 309 aa12.08□□□□□ -0.48
CPSF1-208ENST00000532560 OR10R2Q8NGX6 335 aa12.08□□□□□ -0.48
CPSF1-208ENST00000532560 WFDC12Q8WWY7 111 aa12.08□□□□□ -0.48
CPSF1-208ENST00000532560 HDHD3Q9BSH5 251 aaPredicted RBP12.08□□□□□ -0.48
CPSF1-208ENST00000532560 OR2S2Q9NQN1 319 aa12.08□□□□□ -0.48
CPSF1-208ENST00000532560 ABRACLQ9P1F3 81 aa12.08□□□□□ -0.48
CPSF1-208ENST00000532560 ZNF221Q9UK13 617 aa12.08□□□□□ -0.48
CPSF1-208ENST00000532560 MGAT4AQ9UM21 535 aa12.08□□□□□ -0.48
CPSF1-208ENST00000532560 A0A1W2PPI3 338 aa12.07□□□□□ -0.48
CPSF1-208ENST00000532560 METTL21EPA6NDL7 271 aa12.07□□□□□ -0.48
CPSF1-208ENST00000532560 RFX2P48378 723 aa12.07□□□□□ -0.48
CPSF1-208ENST00000532560 SCAND1P57086 179 aa12.07□□□□□ -0.48
CPSF1-208ENST00000532560 ZNF816Q0VGE8 651 aaPredicted RBP12.07□□□□□ -0.48
CPSF1-208ENST00000532560 MOGAT2Q3SYC2 334 aa12.07□□□□□ -0.48
CPSF1-208ENST00000532560 LY6G6FQ5SQ64 297 aa12.07□□□□□ -0.48
CPSF1-208ENST00000532560 FAM53AQ6NSI3 398 aaPredicted RBP12.07□□□□□ -0.48
CPSF1-208ENST00000532560 CNIH2Q6PI25 160 aa12.07□□□□□ -0.48
CPSF1-208ENST00000532560 SHISA2Q6UWI4 295 aa12.07□□□□□ -0.48
CPSF1-208ENST00000532560 OR8H3Q8N146 312 aa12.07□□□□□ -0.48
CPSF1-208ENST00000532560 OR10V1Q8NGI7 309 aa12.07□□□□□ -0.48
CPSF1-208ENST00000532560 ENKURQ8TC29 256 aa12.07□□□□□ -0.48
CPSF1-208ENST00000532560 LGALS14Q8TCE9 139 aa12.07□□□□□ -0.48
CPSF1-208ENST00000532560 GALMQ96C23 342 aa12.07□□□□□ -0.48
CPSF1-208ENST00000532560 RAB3CQ96E17 227 aa12.07□□□□□ -0.48
CPSF1-208ENST00000532560 CMTM3Q96MX0 182 aa12.07□□□□□ -0.48
CPSF1-208ENST00000532560 CMSS1Q9BQ75 279 aaKnown RBP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms