RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 KCNAB3O43448 404 aa12.96□□□□□ -0.33
LSM1-205ENST00000523511 CLDN12P56749 244 aa12.96□□□□□ -0.33
LSM1-205ENST00000523511 HMGN3Q15651 99 aa12.96□□□□□ -0.33
LSM1-205ENST00000523511 C22orf42Q6IC83 251 aa12.96□□□□□ -0.33
LSM1-205ENST00000523511 SLC35E3Q7Z769 313 aa12.96□□□□□ -0.33
LSM1-205ENST00000523511 TPRA1Q86W33 373 aa12.96□□□□□ -0.33
LSM1-205ENST00000523511 EDARADDQ8WWZ3 215 aa12.96□□□□□ -0.33
LSM1-205ENST00000523511 GFI1Q99684 422 aa12.96□□□□□ -0.33
LSM1-205ENST00000523511 LIN7CQ9NUP9 197 aaKnown RBP12.96□□□□□ -0.33
LSM1-205ENST00000523511 AK3Q9UIJ7 227 aa12.96□□□□□ -0.33
LSM1-205ENST00000523511 NBEAL1Q6ZS30 2694 aa12.96□□□□□ -0.33
LSM1-205ENST00000523511 IGHV3-72A0A0B4J1Y9 119 aa12.95□□□□□ -0.34
LSM1-205ENST00000523511 PSMB11A5LHX3 300 aa12.95□□□□□ -0.34
LSM1-205ENST00000523511 RAB29O14966 203 aa12.95□□□□□ -0.34
LSM1-205ENST00000523511 AMY1AP04745 511 aa12.95□□□□□ -0.34
LSM1-205ENST00000523511 AMY2AP04746 511 aa12.95□□□□□ -0.34
LSM1-205ENST00000523511 CD3GP09693 182 aa12.95□□□□□ -0.34
LSM1-205ENST00000523511 RAB6AP20340 208 aa12.95□□□□□ -0.34
LSM1-205ENST00000523511 FGF9P31371 208 aaPredicted RBP12.95□□□□□ -0.34
LSM1-205ENST00000523511 PPP1CCP36873 323 aaKnown RBP12.95□□□□□ -0.34
LSM1-205ENST00000523511 CD83Q01151 205 aa12.95□□□□□ -0.34
LSM1-205ENST00000523511 DEFA6Q01524 100 aa12.95□□□□□ -0.34
LSM1-205ENST00000523511 ZNF880Q6PDB4 577 aa12.95□□□□□ -0.34
LSM1-205ENST00000523511 ZNF773Q6PK81 442 aa12.95□□□□□ -0.34
LSM1-205ENST00000523511 COMMD1Q8N668 190 aa12.95□□□□□ -0.34
LSM1-205ENST00000523511 PTX4Q96A99 478 aa12.95□□□□□ -0.34
LSM1-205ENST00000523511 RAB3CQ96E17 227 aa12.95□□□□□ -0.34
LSM1-205ENST00000523511 PECRQ9BY49 303 aa12.95□□□□□ -0.34
LSM1-205ENST00000523511 STUB1Q9UNE7 303 aa12.95□□□□□ -0.34
LSM1-205ENST00000523511 RRP15Q9Y3B9 282 aaKnown RBP12.95□□□□□ -0.34
LSM1-205ENST00000523511 ITGB1BP1O14713 200 aa12.94□□□□□ -0.34
LSM1-205ENST00000523511 SLC31A2O15432 143 aa12.94□□□□□ -0.34
LSM1-205ENST00000523511 RRP9O43818 475 aaKnown RBP12.94□□□□□ -0.34
LSM1-205ENST00000523511 PF4V1P10720 104 aa12.94□□□□□ -0.34
LSM1-205ENST00000523511 TALDO1P37837 337 aa12.94□□□□□ -0.34
LSM1-205ENST00000523511 CEACAM6P40199 344 aa12.94□□□□□ -0.34
LSM1-205ENST00000523511 SERPINB10P48595 397 aa12.94□□□□□ -0.34
LSM1-205ENST00000523511 TMEM95Q3KNT9 176 aa12.94□□□□□ -0.34
LSM1-205ENST00000523511 FAM71F2Q6NXP2 309 aa12.94□□□□□ -0.34
LSM1-205ENST00000523511 WIPF2Q8TF74 440 aaPredicted RBP12.94□□□□□ -0.34
LSM1-205ENST00000523511 ARHGAP5-AS1Q96IT6 56 aa12.94□□□□□ -0.34
LSM1-205ENST00000523511 KCNK15Q9H427 330 aa12.94□□□□□ -0.34
LSM1-205ENST00000523511 A0A0A6YYD4 124 aa12.93□□□□□ -0.34
LSM1-205ENST00000523511 TMEM272A0A1B0GTI8 110 aa12.93□□□□□ -0.34
LSM1-205ENST00000523511 SH2D7A6NKC9 451 aaPredicted RBP12.93□□□□□ -0.34
LSM1-205ENST00000523511 AP4M1O00189 453 aa12.93□□□□□ -0.34
LSM1-205ENST00000523511 SCGNO76038 276 aa12.93□□□□□ -0.34
LSM1-205ENST00000523511 IGHG2P01859 326 aa12.93□□□□□ -0.34
LSM1-205ENST00000523511 MC5RP33032 325 aa12.93□□□□□ -0.34
LSM1-205ENST00000523511 TMEM50BP56557 158 aa12.93□□□□□ -0.34
LSM1-205ENST00000523511 KIR2DS1Q14954 304 aa12.93□□□□□ -0.34
LSM1-205ENST00000523511 OR10R2Q8NGX6 335 aa12.93□□□□□ -0.34
LSM1-205ENST00000523511 PHF21AQ96BD5 680 aa12.93□□□□□ -0.34
LSM1-205ENST00000523511 ZNF251Q9BRH9 671 aa12.93□□□□□ -0.34
LSM1-205ENST00000523511 ABCG5Q9H222 651 aa12.93□□□□□ -0.34
LSM1-205ENST00000523511 Q9N2K0 584 aa12.93□□□□□ -0.34
LSM1-205ENST00000523511 VCX3AQ9NNX9 186 aa12.93□□□□□ -0.34
LSM1-205ENST00000523511 ZFP57Q9NU63 452 aa12.93□□□□□ -0.34
LSM1-205ENST00000523511 TXNL4BQ9NX01 149 aaKnown RBP12.93□□□□□ -0.34
LSM1-205ENST00000523511 SLC23A1Q9UHI7 598 aa12.93□□□□□ -0.34
LSM1-205ENST00000523511 NOTOA8MTQ0 251 aa12.92□□□□□ -0.34
LSM1-205ENST00000523511 TRDCB7Z8K6 153 aa12.92□□□□□ -0.34
LSM1-205ENST00000523511 LDLRAD4O15165 306 aa12.92□□□□□ -0.34
LSM1-205ENST00000523511 SLC6A1P30531 599 aa12.92□□□□□ -0.34
LSM1-205ENST00000523511 SOX6P35712 828 aa12.92□□□□□ -0.34
LSM1-205ENST00000523511 HLA-DRB3P79483 266 aa12.92□□□□□ -0.34
LSM1-205ENST00000523511 LSAMPQ13449 338 aa12.92□□□□□ -0.34
LSM1-205ENST00000523511 GNMTQ14749 295 aa12.92□□□□□ -0.34
LSM1-205ENST00000523511 KCTD21Q4G0X4 260 aa12.92□□□□□ -0.34
LSM1-205ENST00000523511 KHDC1LQ5JSQ8 128 aa12.92□□□□□ -0.34
LSM1-205ENST00000523511 FAM53AQ6NSI3 398 aaPredicted RBP12.92□□□□□ -0.34
LSM1-205ENST00000523511 Q8N6K4 173 aa12.92□□□□□ -0.34
LSM1-205ENST00000523511 KCTD7Q96MP8 289 aa12.92□□□□□ -0.34
LSM1-205ENST00000523511 KIAA1456Q9P272 454 aa12.92□□□□□ -0.34
LSM1-205ENST00000523511 ZNF221Q9UK13 617 aa12.92□□□□□ -0.34
LSM1-205ENST00000523511 KIAA2026Q5HYC2 2103 aa12.92□□□□□ -0.34
LSM1-205ENST00000523511 FOXI3A8MTJ6 420 aaPredicted RBP12.91□□□□□ -0.34
LSM1-205ENST00000523511 PF4P02776 101 aa12.91□□□□□ -0.34
LSM1-205ENST00000523511 OR5H8P0DN80 308 aa12.91□□□□□ -0.34
LSM1-205ENST00000523511 OR10A3P58181 314 aa12.91□□□□□ -0.34
LSM1-205ENST00000523511 TEX38Q6PEX7 206 aa12.91□□□□□ -0.34
LSM1-205ENST00000523511 ZNF833PQ6ZTB9 187 aa12.91□□□□□ -0.34
LSM1-205ENST00000523511 Q8N9W7 124 aa12.91□□□□□ -0.34
LSM1-205ENST00000523511 OR4A4PQ8NGN8 299 aa12.91□□□□□ -0.34
LSM1-205ENST00000523511 CHCHD6Q9BRQ6 235 aa12.91□□□□□ -0.34
LSM1-205ENST00000523511 ATG5Q9H1Y0 275 aa12.91□□□□□ -0.34
LSM1-205ENST00000523511 A0A1W2PRX2 142 aa12.9□□□□□ -0.34
LSM1-205ENST00000523511 GPR12P47775 334 aa12.9□□□□□ -0.34
LSM1-205ENST00000523511 ARFRP1Q13795 201 aa12.9□□□□□ -0.34
LSM1-205ENST00000523511 MMDQ15546 238 aa12.9□□□□□ -0.34
LSM1-205ENST00000523511 PNLIPRP3Q17RR3 467 aa12.9□□□□□ -0.34
LSM1-205ENST00000523511 TIMM50Q3ZCQ8 353 aa12.9□□□□□ -0.34
LSM1-205ENST00000523511 PLAC9Q5JTB6 97 aa12.9□□□□□ -0.34
LSM1-205ENST00000523511 STPG2Q8N412 459 aa12.9□□□□□ -0.34
LSM1-205ENST00000523511 NABP2Q9BQ15 211 aa12.9□□□□□ -0.34
LSM1-205ENST00000523511 SAA2-SAA4A0A096LPE2 208 aa12.89□□□□□ -0.35
LSM1-205ENST00000523511 OR5H14A6NHG9 310 aa12.89□□□□□ -0.35
LSM1-205ENST00000523511 ZNF736B4DX44 427 aaPredicted RBP12.89□□□□□ -0.35
LSM1-205ENST00000523511 ST8SIA5O15466 376 aa12.89□□□□□ -0.35
LSM1-205ENST00000523511 TMEM127O75204 238 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms