RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 USF3Q68DE3 2245 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 TRAV6A0A075B6T7 132 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 IGHV2-70DA0A0C4DH43 119 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 DUXBA0A1W2PPF3 345 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 CRYM-AS1A6NIL9 109 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 KIAA1324LA8MWY0 1029 aaPredicted RBP7.94□□□□□ -1.14
USP54-214ENST00000492357 TXNL1O43396 289 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 FCN3O75636 299 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 TFF1P04155 84 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 IGHV1-8P0DP01 117 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 RPA2P15927 270 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 SPNP16150 400 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 HLA-GP17693 338 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 USF1P22415 310 aaPredicted RBP7.94□□□□□ -1.14
USP54-214ENST00000492357 NFYAP23511 347 aaPredicted RBP7.94□□□□□ -1.14
USP54-214ENST00000492357 PRTN3P24158 256 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 IL3RAP26951 378 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 ZNF137PP52743 207 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 PAX2Q02962 417 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 CATR1Q13166 79 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 ZNF273Q14593 569 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 NCR3LG1Q68D85 454 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 ZNF626Q68DY1 528 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 BTNL3Q6UXE8 466 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 LYG2Q86SG7 212 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 LRTM2Q8N967 370 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 ZNF439Q8NDP4 499 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 BEND2Q8NDZ0 799 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 OR9G1Q8NH87 305 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 ZNF431Q8TF32 576 aaPredicted RBP7.94□□□□□ -1.14
USP54-214ENST00000492357 MITD1Q8WV92 249 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 IL22RA2Q969J5 263 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 PPP1R14BQ96C90 147 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 PERPQ96FX8 193 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 ADTRPQ96IZ2 230 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 HSD17B10Q99714 261 aaKnown RBP7.94□□□□□ -1.14
USP54-214ENST00000492357 FOXC2Q99958 501 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 RTBDNQ9BSG5 229 aaPredicted RBP7.94□□□□□ -1.14
USP54-214ENST00000492357 TMEM133Q9H2Q1 129 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 LIME1Q9H400 295 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 HEXA-AS1Q9H8Q6 139 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 SLC2A9Q9NRM0 540 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 LIN7CQ9NUP9 197 aaKnown RBP7.94□□□□□ -1.14
USP54-214ENST00000492357 ING3Q9NXR8 418 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 OR1A1Q9P1Q5 309 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 ZNF221Q9UK13 617 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 VSIG4Q9Y279 399 aa7.94□□□□□ -1.14
USP54-214ENST00000492357 PTPN13Q12923 2485 aa7.93□□□□□ -1.14
USP54-214ENST00000492357 B4DSR2 109 aa7.93□□□□□ -1.14
USP54-214ENST00000492357 RAB29O14966 203 aa7.93□□□□□ -1.14
USP54-214ENST00000492357 RBFOX2O43251 390 aaKnown RBP eCLIP7.93□□□□□ -1.14
USP54-214ENST00000492357 ATG12O94817 140 aa7.93□□□□□ -1.14
USP54-214ENST00000492357 GNRHRP30968 328 aa7.93□□□□□ -1.14
USP54-214ENST00000492357 BCAP31P51572 246 aa7.93□□□□□ -1.14
USP54-214ENST00000492357 PRRX1P54821 245 aa7.93□□□□□ -1.14
USP54-214ENST00000492357 C4orf46Q504U0 113 aa7.93□□□□□ -1.14
USP54-214ENST00000492357 CADM3Q8N126 398 aa7.93□□□□□ -1.14
USP54-214ENST00000492357 PRR18Q8N4B5 295 aa7.93□□□□□ -1.14
USP54-214ENST00000492357 C11orf42Q8N5U0 333 aa7.93□□□□□ -1.14
USP54-214ENST00000492357 OR13D1Q8NGV5 346 aa7.93□□□□□ -1.14
USP54-214ENST00000492357 CD300LFQ8TDQ1 290 aa7.93□□□□□ -1.14
USP54-214ENST00000492357 RTN4IP1Q8WWV3 396 aaPredicted RBP7.93□□□□□ -1.14
USP54-214ENST00000492357 TOMM40LQ969M1 308 aa7.93□□□□□ -1.14
USP54-214ENST00000492357 TMEM186Q96B77 213 aa7.93□□□□□ -1.14
USP54-214ENST00000492357 CYYR1Q96J86 154 aa7.93□□□□□ -1.14
USP54-214ENST00000492357 S1PR3Q99500 378 aa7.93□□□□□ -1.14
USP54-214ENST00000492357 PHB2Q99623 299 aa7.93□□□□□ -1.14
USP54-214ENST00000492357 ABHD14AQ9BUJ0 271 aa7.93□□□□□ -1.14
USP54-214ENST00000492357 PLA2G2EQ9NZK7 142 aa7.93□□□□□ -1.14
USP54-214ENST00000492357 AMMECR1Q9Y4X0 333 aaPredicted RBP7.93□□□□□ -1.14
USP54-214ENST00000492357 RBM7Q9Y580 266 aaKnown RBP7.93□□□□□ -1.14
USP54-214ENST00000492357 GCN1Q92616 2671 aaKnown RBP7.93□□□□□ -1.14
USP54-214ENST00000492357 TRAV39A0A0B4J263 110 aa7.92□□□□□ -1.14
USP54-214ENST00000492357 TRAV20A0A0B4J274 112 aa7.92□□□□□ -1.14
USP54-214ENST00000492357 C9orf170A2RU37 121 aa7.92□□□□□ -1.14
USP54-214ENST00000492357 HMX3A6NHT5 357 aa7.92□□□□□ -1.14
USP54-214ENST00000492357 OOSP1A8MZH6 123 aa7.92□□□□□ -1.14
USP54-214ENST00000492357 C22orf46C9J442 243 aa7.92□□□□□ -1.14
USP54-214ENST00000492357 H0Y980 276 aa7.92□□□□□ -1.14
USP54-214ENST00000492357 J3QLI3 93 aa7.92□□□□□ -1.14
USP54-214ENST00000492357 MPPED1O15442 326 aa7.92□□□□□ -1.14
USP54-214ENST00000492357 SFT2D2O95562 160 aa7.92□□□□□ -1.14
USP54-214ENST00000492357 IFNA2P01563 188 aa7.92□□□□□ -1.14
USP54-214ENST00000492357 HLA-AP01891 365 aaKnown RBP7.92□□□□□ -1.14
USP54-214ENST00000492357 OR8U9P0C7N5 309 aa7.92□□□□□ -1.14
USP54-214ENST00000492357 F2RP25116 425 aa7.92□□□□□ -1.14
USP54-214ENST00000492357 PPP1CCP36873 323 aaKnown RBP7.92□□□□□ -1.14
USP54-214ENST00000492357 RBMXP38159 391 aaKnown RBP7.92□□□□□ -1.14
USP54-214ENST00000492357 KIR2DS2P43631 304 aa7.92□□□□□ -1.14
USP54-214ENST00000492357 ARHGDIBP52566 201 aa7.92□□□□□ -1.14
USP54-214ENST00000492357 PIGPP57054 158 aa7.92□□□□□ -1.14
USP54-214ENST00000492357 FXYD4P59646 89 aa7.92□□□□□ -1.14
USP54-214ENST00000492357 KRTAP10-9P60411 292 aa7.92□□□□□ -1.14
USP54-214ENST00000492357 RRAS2P62070 204 aaPredicted RBP7.92□□□□□ -1.14
USP54-214ENST00000492357 DHRS2Q13268 280 aa7.92□□□□□ -1.14
USP54-214ENST00000492357 KIAA2026Q5HYC2 2103 aa7.92□□□□□ -1.14
USP54-214ENST00000492357 TMED4Q7Z7H5 227 aa7.92□□□□□ -1.14
USP54-214ENST00000492357 TEX29Q8N6K0 151 aa7.92□□□□□ -1.14
USP54-214ENST00000492357 OR11H6Q8NGC7 330 aa7.92□□□□□ -1.14
USP54-214ENST00000492357 OR52L2PQ8NGH6 319 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms