RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 FOLR3P41439 243 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 ID4P47928 161 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 FHITP49789 147 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 PDLIM4P50479 330 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 DYNLT3P51808 116 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 FAM3BP58499 235 aaPredicted RBP4.94□□□□□ -1.62
VPS41-214ENST00000490924 HIST1H2BDP58876 126 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 RAB4BP61018 213 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 PKIAP61925 76 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 HIST1H2BCP62807 126 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 NKX6-1P78426 367 aaPredicted RBP4.94□□□□□ -1.62
VPS41-214ENST00000490924 LCN2P80188 198 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 HNF4GQ14541 408 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 HERPUD1Q15011 391 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 HIST2H2BEQ16778 126 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 CEACAM16Q2WEN9 425 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 TMEM41BQ5BJD5 291 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 SPIN3Q5JUX0 258 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 FAM209BQ5JX69 171 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.94□□□□□ -1.62
VPS41-214ENST00000490924 TSPO2Q5TGU0 170 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 PRAMEF20Q5VT98 475 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 FAM90A2PQ658T7 463 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 PMS2CLQ68D20 193 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 TCEAL6Q6IPX3 200 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 Q6ZPA2 131 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 ODF3L1Q8IXM7 274 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 C1orf174Q8IYL3 243 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 CYB561D1Q8N8Q1 229 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 OR10D3Q8NH80 312 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 OR2AE1Q8NHA4 323 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 OR10J5Q8NHC4 309 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 SCGB1C1Q8TD33 95 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 Q8WTZ3 238 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 CA5BP1Q8WTZ4 195 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 OR5P3Q8WZ94 311 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 RAB1CQ92928 201 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 HIST1H2BHQ93079 126 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 ISOC2Q96AB3 205 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 ANAPC16Q96DE5 110 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 BSCL2Q96G97 398 aaPredicted RBP4.94□□□□□ -1.62
VPS41-214ENST00000490924 FAM210BQ96KR6 192 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 PFDN5Q99471 154 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 HIST1H2BNQ99877 126 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 HIST1H2BMQ99879 126 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 CDH20Q9HBT6 801 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 SDF2L1Q9HCN8 221 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 P4HTMQ9NXG6 502 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 TAAR3PQ9P1P4 343 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 B4GALT7Q9UBV7 327 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 NAT8Q9UHE5 227 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 POLDIP2Q9Y2S7 368 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 WIPI2Q9Y4P8 454 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 PUS1Q9Y606 427 aaKnown RBP eCLIP4.94□□□□□ -1.62
VPS41-214ENST00000490924 SHANK1Q9Y566 2161 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 BRWD1Q9NSI6 2320 aa4.94□□□□□ -1.62
VPS41-214ENST00000490924 TNRC6AQ8NDV7 1962 aaKnown RBP4.93□□□□□ -1.62
VPS41-214ENST00000490924 TRAV9-1A0A075B6T8 112 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 A0A1W2PPE3 182 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 PPP5D1E7EU14 171 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 TSTD3H0UI37 97 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 MRPL33O75394 65 aaKnown RBP4.93□□□□□ -1.62
VPS41-214ENST00000490924 C1QL1O75973 258 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 CER1O95813 267 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 ARG1P05089 322 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 P0C879 139 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 ZNF883P0CG24 379 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 OR13C7P0DN81 318 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 B4GALT1P15291 398 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 KLK2P20151 261 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 RPS10P46783 165 aaKnown RBP4.93□□□□□ -1.62
VPS41-214ENST00000490924 CYB561P49447 251 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 KRTAP1-1Q07627 177 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 ZNF146Q15072 292 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 GABRA6Q16445 453 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 VWC2Q2TAL6 325 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 ACOT6Q3I5F7 207 aaPredicted RBP4.93□□□□□ -1.62
VPS41-214ENST00000490924 IGSF11Q5DX21 431 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 PYY3Q5JQD4 70 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 CXorf66Q5JRM2 361 aaPredicted RBP4.93□□□□□ -1.62
VPS41-214ENST00000490924 TRAT1Q6PIZ9 186 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 TMEM14EPQ6UXP3 125 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 MEX3BQ6ZN04 569 aaKnown RBP4.93□□□□□ -1.62
VPS41-214ENST00000490924 SLC16A13Q7RTY0 426 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 MRPL21Q7Z2W9 205 aaKnown RBP4.93□□□□□ -1.62
VPS41-214ENST00000490924 CALHM1Q8IU99 346 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 TMEM183AQ8IXX5 376 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 UBALD2Q8IYN6 164 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 HIST3H2BBQ8N257 126 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 ZNF525Q8N782 197 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 ZFP62Q8NB50 900 aaPredicted RBP4.93□□□□□ -1.62
VPS41-214ENST00000490924 BEND2Q8NDZ0 799 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 OR10A7Q8NGE5 316 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 OR56B2PQ8NGI1 322 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 OR10V1Q8NGI7 309 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 OR11L1Q8NGX0 322 aa4.93□□□□□ -1.62
VPS41-214ENST00000490924 MRPL30Q8TCC3 161 aaKnown RBP4.93□□□□□ -1.62
VPS41-214ENST00000490924 ZCCHC14Q8WYQ9 949 aaKnown RBP4.93□□□□□ -1.62
VPS41-214ENST00000490924 PSMF1Q92530 271 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms