RNA–Protein interactions for RNA: ENST00000488186.5

C9orf3-219, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,211 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-219ENST00000488186 PTHLHP12272 177 aa12.74□□□□□ -0.37
C9orf3-219ENST00000488186 PAX6P26367 422 aa12.74□□□□□ -0.37
C9orf3-219ENST00000488186 BRS3P32247 399 aa12.74□□□□□ -0.37
C9orf3-219ENST00000488186 IER3P46695 156 aa12.74□□□□□ -0.37
C9orf3-219ENST00000488186 ARPC4P59998 168 aa12.74□□□□□ -0.37
C9orf3-219ENST00000488186 SLC9A3R2Q15599 337 aa12.74□□□□□ -0.37
C9orf3-219ENST00000488186 TPTE2P1Q5T6R2 138 aa12.74□□□□□ -0.37
C9orf3-219ENST00000488186 FAM53AQ6NSI3 398 aaPredicted RBP12.74□□□□□ -0.37
C9orf3-219ENST00000488186 SNX29P2Q8IUI4 249 aa12.74□□□□□ -0.37
C9orf3-219ENST00000488186 LYG1Q8N1E2 194 aa12.74□□□□□ -0.37
C9orf3-219ENST00000488186 LINC00311Q8N616 119 aa12.74□□□□□ -0.37
C9orf3-219ENST00000488186 TMEM86BQ8N661 226 aa12.74□□□□□ -0.37
C9orf3-219ENST00000488186 OR5R1Q8NH85 324 aa12.74□□□□□ -0.37
C9orf3-219ENST00000488186 EDARADDQ8WWZ3 215 aa12.74□□□□□ -0.37
C9orf3-219ENST00000488186 DIRAS2Q96HU8 199 aa12.74□□□□□ -0.37
C9orf3-219ENST00000488186 ABHD14AQ9BUJ0 271 aa12.74□□□□□ -0.37
C9orf3-219ENST00000488186 SLIRPQ9GZT3 109 aaKnown RBP12.74□□□□□ -0.37
C9orf3-219ENST00000488186 POMT1Q9Y6A1 747 aa12.74□□□□□ -0.37
C9orf3-219ENST00000488186 MEIS3P1A6NDR6 274 aa12.73□□□□□ -0.37
C9orf3-219ENST00000488186 OOSP1A8MZH6 123 aa12.73□□□□□ -0.37
C9orf3-219ENST00000488186 H3BUX3 64 aa12.73□□□□□ -0.37
C9orf3-219ENST00000488186 GAPDHP04406 335 aaKnown RBP12.73□□□□□ -0.37
C9orf3-219ENST00000488186 RAB7AP51149 207 aa12.73□□□□□ -0.37
C9orf3-219ENST00000488186 IGSF11Q5DX21 431 aa12.73□□□□□ -0.37
C9orf3-219ENST00000488186 CT45A1Q5HYN5 189 aa12.73□□□□□ -0.37
C9orf3-219ENST00000488186 Q6ZS49 121 aa12.73□□□□□ -0.37
C9orf3-219ENST00000488186 SLC25A48Q6ZT89 311 aaKnown RBP12.73□□□□□ -0.37
C9orf3-219ENST00000488186 LAX1Q8IWV1 398 aa12.73□□□□□ -0.37
C9orf3-219ENST00000488186 ZDHHC22Q8N966 263 aa12.73□□□□□ -0.37
C9orf3-219ENST00000488186 BEST4Q8NFU0 473 aa12.73□□□□□ -0.37
C9orf3-219ENST00000488186 CT45A3Q8NHU0 189 aa12.73□□□□□ -0.37
C9orf3-219ENST00000488186 TMEM158Q8WZ71 300 aa12.73□□□□□ -0.37
C9orf3-219ENST00000488186 AJUBAQ96IF1 538 aa12.73□□□□□ -0.37
C9orf3-219ENST00000488186 OR1A1Q9P1Q5 309 aa12.73□□□□□ -0.37
C9orf3-219ENST00000488186 RBM7Q9Y580 266 aaKnown RBP12.73□□□□□ -0.37
C9orf3-219ENST00000488186 SLC31A2O15432 143 aa12.72□□□□□ -0.37
C9orf3-219ENST00000488186 HLA-DQB1P01920 261 aa12.72□□□□□ -0.37
C9orf3-219ENST00000488186 CRYBA1P05813 215 aa12.72□□□□□ -0.37
C9orf3-219ENST00000488186 FCER2P06734 321 aa12.72□□□□□ -0.37
C9orf3-219ENST00000488186 S100A5P33763 92 aa12.72□□□□□ -0.37
C9orf3-219ENST00000488186 ZNF134P52741 427 aa12.72□□□□□ -0.37
C9orf3-219ENST00000488186 UBA52P62987 128 aaKnown RBP12.72□□□□□ -0.37
C9orf3-219ENST00000488186 SRSF2Q01130 221 aaKnown RBP12.72□□□□□ -0.37
C9orf3-219ENST00000488186 AANATQ16613 207 aa12.72□□□□□ -0.37
C9orf3-219ENST00000488186 LY6G6FQ5SQ64 297 aa12.72□□□□□ -0.37
C9orf3-219ENST00000488186 LDLRAD2Q5SZI1 272 aa12.72□□□□□ -0.37
C9orf3-219ENST00000488186 CNIH2Q6PI25 160 aa12.72□□□□□ -0.37
C9orf3-219ENST00000488186 HOGA1Q86XE5 327 aa12.72□□□□□ -0.37
C9orf3-219ENST00000488186 DYNAPQ8N1N2 210 aa12.72□□□□□ -0.37
C9orf3-219ENST00000488186 GVQW1Q8N7I0 195 aa12.72□□□□□ -0.37
C9orf3-219ENST00000488186 MIXL1Q9H2W2 232 aa12.72□□□□□ -0.37
C9orf3-219ENST00000488186 MMP27Q9H306 513 aa12.72□□□□□ -0.37
C9orf3-219ENST00000488186 ESM1Q9NQ30 184 aa12.72□□□□□ -0.37
C9orf3-219ENST00000488186 ANXA10Q9UJ72 324 aa12.72□□□□□ -0.37
C9orf3-219ENST00000488186 TRBV6-7A0A0A0MS04 114 aa12.71□□□□□ -0.37
C9orf3-219ENST00000488186 LY6LH3BQJ8 138 aa12.71□□□□□ -0.37
C9orf3-219ENST00000488186 HSD17B6O14756 317 aa12.71□□□□□ -0.37
C9orf3-219ENST00000488186 DIRAS3O95661 229 aa12.71□□□□□ -0.37
C9orf3-219ENST00000488186 RAB13P51153 203 aa12.71□□□□□ -0.37
C9orf3-219ENST00000488186 IL18Q14116 193 aa12.71□□□□□ -0.37
C9orf3-219ENST00000488186 LY6EQ16553 131 aa12.71□□□□□ -0.37
C9orf3-219ENST00000488186 C16orf87Q6PH81 154 aa12.71□□□□□ -0.37
C9orf3-219ENST00000488186 MOB3BQ86TA1 216 aa12.71□□□□□ -0.37
C9orf3-219ENST00000488186 ZNF439Q8NDP4 499 aa12.71□□□□□ -0.37
C9orf3-219ENST00000488186 GCDHQ92947 438 aaPredicted RBP12.71□□□□□ -0.37
C9orf3-219ENST00000488186 S1PR3Q99500 378 aa12.71□□□□□ -0.37
C9orf3-219ENST00000488186 CABLES2Q9BTV7 478 aa12.71□□□□□ -0.37
C9orf3-219ENST00000488186 SCPEP1Q9HB40 452 aa12.71□□□□□ -0.37
C9orf3-219ENST00000488186 RDH8Q9NYR8 311 aa12.71□□□□□ -0.37
C9orf3-219ENST00000488186 RABL2AQ9UBK7 228 aaPredicted RBP12.71□□□□□ -0.37
C9orf3-219ENST00000488186 ZNF221Q9UK13 617 aa12.71□□□□□ -0.37
C9orf3-219ENST00000488186 RABL2BQ9UNT1 228 aa12.71□□□□□ -0.37
C9orf3-219ENST00000488186 IGKV1D-8A0A087WSZ0 117 aa12.7□□□□□ -0.38
C9orf3-219ENST00000488186 IGKV1-6A0A0C4DH72 117 aa12.7□□□□□ -0.38
C9orf3-219ENST00000488186 VGLL3A8MV65 326 aa12.7□□□□□ -0.38
C9orf3-219ENST00000488186 CLDN34H7C241 214 aa12.7□□□□□ -0.38
C9orf3-219ENST00000488186 SULT1C2O00338 296 aa12.7□□□□□ -0.38
C9orf3-219ENST00000488186 ST8SIA5O15466 376 aa12.7□□□□□ -0.38
C9orf3-219ENST00000488186 TPPPO94811 219 aa12.7□□□□□ -0.38
C9orf3-219ENST00000488186 RNASE1P07998 156 aaKnown RBP12.7□□□□□ -0.38
C9orf3-219ENST00000488186 OR3A3P47888 321 aa12.7□□□□□ -0.38
C9orf3-219ENST00000488186 REG1BP48304 166 aa12.7□□□□□ -0.38
C9orf3-219ENST00000488186 HERPUD1Q15011 391 aa12.7□□□□□ -0.38
C9orf3-219ENST00000488186 TGIF2LXQ8IUE1 241 aa12.7□□□□□ -0.38
C9orf3-219ENST00000488186 OR8H3Q8N146 312 aa12.7□□□□□ -0.38
C9orf3-219ENST00000488186 CAPSLQ8WWF8 208 aa12.7□□□□□ -0.38
C9orf3-219ENST00000488186 NXF2Q9GZY0 626 aaKnown RBP12.7□□□□□ -0.38
C9orf3-219ENST00000488186 C11orf54Q9H0W9 315 aaPredicted RBP12.7□□□□□ -0.38
C9orf3-219ENST00000488186 GHITMQ9H3K2 345 aa12.7□□□□□ -0.38
C9orf3-219ENST00000488186 NECAP2Q9NVZ3 263 aa12.7□□□□□ -0.38
C9orf3-219ENST00000488186 PIPOXQ9P0Z9 390 aa12.7□□□□□ -0.38
C9orf3-219ENST00000488186 PITPNC1Q9UKF7 332 aa12.7□□□□□ -0.38
C9orf3-219ENST00000488186 FABP12A6NFH5 140 aa12.69□□□□□ -0.38
C9orf3-219ENST00000488186 ITGB1BP1O14713 200 aa12.69□□□□□ -0.38
C9orf3-219ENST00000488186 RAB29O14966 203 aa12.69□□□□□ -0.38
C9orf3-219ENST00000488186 TXNL1O43396 289 aa12.69□□□□□ -0.38
C9orf3-219ENST00000488186 RNASE12Q5GAN4 147 aaKnown RBP12.69□□□□□ -0.38
C9orf3-219ENST00000488186 FAM216AQ8WUB2 273 aa12.69□□□□□ -0.38
C9orf3-219ENST00000488186 FCAMRQ8WWV6 532 aa12.69□□□□□ -0.38
C9orf3-219ENST00000488186 CHIAQ9BZP6 476 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms