RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, human

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COL7A1-208	ENST00000470076	PLCXD1	Q9NUJ7	323 aa		13.65	□□□□□ -0.22
COL7A1-208	ENST00000470076	LSM4	Q9Y4Z0	139 aa	Known RBP	13.65	□□□□□ -0.22
COL7A1-208	ENST00000470076	PPIF	P30405	207 aa	Known RBP	13.64	□□□□□ -0.23
COL7A1-208	ENST00000470076	NKAPL	Q5M9Q1	402 aa		13.64	□□□□□ -0.23
COL7A1-208	ENST00000470076	C6orf141	Q5SZD1	244 aa		13.64	□□□□□ -0.23
COL7A1-208	ENST00000470076	AHSA2	Q719I0	299 aa		13.64	□□□□□ -0.23
COL7A1-208	ENST00000470076	NANOGP1	Q8N7R0	232 aa		13.64	□□□□□ -0.23
COL7A1-208	ENST00000470076	OR11H1	Q8NG94	326 aa		13.64	□□□□□ -0.23
COL7A1-208	ENST00000470076	NEDD4L	Q96PU5	975 aa		13.64	□□□□□ -0.23
COL7A1-208	ENST00000470076	NABP2	Q9BQ15	211 aa		13.64	□□□□□ -0.23
COL7A1-208	ENST00000470076	MRPL20	Q9BYC9	149 aa	Known RBP	13.64	□□□□□ -0.23
COL7A1-208	ENST00000470076	OR51J1	Q9H342	316 aa		13.64	□□□□□ -0.23
COL7A1-208	ENST00000470076	SCOC	Q9UIL1	159 aa		13.64	□□□□□ -0.23
COL7A1-208	ENST00000470076	STAB2	Q8WWQ8	2551 aa		13.63	□□□□□ -0.23
COL7A1-208	ENST00000470076	NBR2	O15453	112 aa		13.63	□□□□□ -0.23
COL7A1-208	ENST00000470076	GNAO1	P09471	354 aa		13.63	□□□□□ -0.23
COL7A1-208	ENST00000470076	CHAT	P28329	748 aa		13.63	□□□□□ -0.23
COL7A1-208	ENST00000470076	LAIR2	Q6ISS4	152 aa		13.63	□□□□□ -0.23
COL7A1-208	ENST00000470076	ZNF833P	Q6ZTB9	187 aa		13.63	□□□□□ -0.23
COL7A1-208	ENST00000470076	OR2AK2	Q8NG84	335 aa		13.63	□□□□□ -0.23
COL7A1-208	ENST00000470076	CYYR1	Q96J86	154 aa		13.63	□□□□□ -0.23
COL7A1-208	ENST00000470076	PRR25	Q96S07	402 aa		13.63	□□□□□ -0.23
COL7A1-208	ENST00000470076	ABRACL	Q9P1F3	81 aa		13.63	□□□□□ -0.23
COL7A1-208	ENST00000470076	VSIG4	Q9Y279	399 aa		13.63	□□□□□ -0.23
COL7A1-208	ENST00000470076	ERGIC3	Q9Y282	383 aa		13.63	□□□□□ -0.23
COL7A1-208	ENST00000470076	WSB1	Q9Y6I7	421 aa		13.63	□□□□□ -0.23
COL7A1-208	ENST00000470076	SORL1	Q92673	2214 aa		13.63	□□□□□ -0.23
COL7A1-208	ENST00000470076	ATP6V0E1	O15342	81 aa		13.62	□□□□□ -0.23
COL7A1-208	ENST00000470076	IGLV1-40	P01703	118 aa		13.62	□□□□□ -0.23
COL7A1-208	ENST00000470076	OR8U8	P0C7N1	319 aa		13.62	□□□□□ -0.23
COL7A1-208	ENST00000470076	ECI1	P42126	302 aa		13.62	□□□□□ -0.23
COL7A1-208	ENST00000470076	INSL3	P51460	131 aa		13.62	□□□□□ -0.23
COL7A1-208	ENST00000470076	RUNX1	Q01196	453 aa		13.62	□□□□□ -0.23
COL7A1-208	ENST00000470076	HMGN3	Q15651	99 aa		13.62	□□□□□ -0.23
COL7A1-208	ENST00000470076	C5orf64	Q2M2E5	130 aa		13.62	□□□□□ -0.23
COL7A1-208	ENST00000470076	ZNF260	Q3ZCT1	412 aa		13.62	□□□□□ -0.23
COL7A1-208	ENST00000470076	LIN54	Q6MZP7	749 aa		13.62	□□□□□ -0.23
COL7A1-208	ENST00000470076	C5orf24	Q7Z6I8	188 aa		13.62	□□□□□ -0.23
COL7A1-208	ENST00000470076	MS4A15	Q8N5U1	240 aa		13.62	□□□□□ -0.23
COL7A1-208	ENST00000470076	ZNF491	Q8N8L2	437 aa		13.62	□□□□□ -0.23
COL7A1-208	ENST00000470076	BPIFB6	Q8NFQ5	453 aa		13.62	□□□□□ -0.23
COL7A1-208	ENST00000470076	NPB	Q8NG41	125 aa		13.62	□□□□□ -0.23
COL7A1-208	ENST00000470076	FBLIM1	Q8WUP2	373 aa		13.62	□□□□□ -0.23
COL7A1-208	ENST00000470076	RITA1	Q96K30	269 aa		13.62	□□□□□ -0.23
COL7A1-208	ENST00000470076	SULT4A1	Q9BR01	284 aa		13.62	□□□□□ -0.23
COL7A1-208	ENST00000470076	ANKRD60	Q9BZ19	345 aa		13.62	□□□□□ -0.23
COL7A1-208	ENST00000470076	KLK15	Q9H2R5	256 aa		13.62	□□□□□ -0.23
COL7A1-208	ENST00000470076	PARP11	Q9NR21	331 aa		13.62	□□□□□ -0.23
COL7A1-208	ENST00000470076	KIAA1456	Q9P272	454 aa		13.62	□□□□□ -0.23
COL7A1-208	ENST00000470076	STEAP1	Q9UHE8	339 aa		13.62	□□□□□ -0.23
COL7A1-208	ENST00000470076	SAA2-SAA4	A0A096LPE2	208 aa		13.61	□□□□□ -0.23
COL7A1-208	ENST00000470076	IGHV7-81	A0A0B4J1V7	117 aa		13.61	□□□□□ -0.23
COL7A1-208	ENST00000470076	TRAV41	A0A0B4J266	112 aa		13.61	□□□□□ -0.23
COL7A1-208	ENST00000470076		G3V318	75 aa		13.61	□□□□□ -0.23
COL7A1-208	ENST00000470076		I3L521	148 aa		13.61	□□□□□ -0.23
COL7A1-208	ENST00000470076	SAA2	P0DJI9	122 aa	Predicted RBP	13.61	□□□□□ -0.23
COL7A1-208	ENST00000470076	VSIG8	P0DPA2	414 aa		13.61	□□□□□ -0.23
COL7A1-208	ENST00000470076	CNTFR	P26992	372 aa		13.61	□□□□□ -0.23
COL7A1-208	ENST00000470076	OR3A3	P47888	321 aa		13.61	□□□□□ -0.23
COL7A1-208	ENST00000470076	RPS27A	P62979	156 aa	Known RBP	13.61	□□□□□ -0.23
COL7A1-208	ENST00000470076	ZNF616	Q08AN1	781 aa		13.61	□□□□□ -0.23
COL7A1-208	ENST00000470076	KIAA0141	Q14154	515 aa	Predicted RBP	13.61	□□□□□ -0.23
COL7A1-208	ENST00000470076	ACSM3	Q53FZ2	586 aa		13.61	□□□□□ -0.23
COL7A1-208	ENST00000470076	C1orf100	Q5SVJ3	147 aa		13.61	□□□□□ -0.23
COL7A1-208	ENST00000470076	GLT8D1	Q68CQ7	371 aa		13.61	□□□□□ -0.23
COL7A1-208	ENST00000470076	FAM71F2	Q6NXP2	309 aa		13.61	□□□□□ -0.23
COL7A1-208	ENST00000470076	OR1N2	Q8NGR9	330 aa		13.61	□□□□□ -0.23
COL7A1-208	ENST00000470076	PHYHIP	Q92561	330 aa		13.61	□□□□□ -0.23
COL7A1-208	ENST00000470076	FAAP24	Q9BTP7	215 aa		13.61	□□□□□ -0.23
COL7A1-208	ENST00000470076	TMEM59	Q9BXS4	323 aa		13.61	□□□□□ -0.23
COL7A1-208	ENST00000470076	GNB4	Q9HAV0	340 aa		13.61	□□□□□ -0.23
COL7A1-208	ENST00000470076	FKBP14	Q9NWM8	211 aa		13.61	□□□□□ -0.23
COL7A1-208	ENST00000470076	ZNF256	Q9Y2P7	627 aa	Predicted RBP	13.61	□□□□□ -0.23
COL7A1-208	ENST00000470076		U3KQK5	164 aa		13.61	□□□□□ -0.23
COL7A1-208	ENST00000470076	NDUFA3	O95167	84 aa		13.6	□□□□□ -0.23
COL7A1-208	ENST00000470076	BLVRB	P30043	206 aa	Predicted RBP	13.6	□□□□□ -0.23
COL7A1-208	ENST00000470076	RAB9A	P51151	201 aa		13.6	□□□□□ -0.23
COL7A1-208	ENST00000470076	GABPB1	Q06547	395 aa	Predicted RBP	13.6	□□□□□ -0.23
COL7A1-208	ENST00000470076	INSL4	Q14641	139 aa		13.6	□□□□□ -0.23
COL7A1-208	ENST00000470076	RCN1	Q15293	331 aa		13.6	□□□□□ -0.23
COL7A1-208	ENST00000470076	OR10K2	Q6IF99	312 aa		13.6	□□□□□ -0.23
COL7A1-208	ENST00000470076	C6orf201	Q7Z4U5	140 aa		13.6	□□□□□ -0.23
COL7A1-208	ENST00000470076	KCNG3	Q8TAE7	436 aa		13.6	□□□□□ -0.23
COL7A1-208	ENST00000470076	IFI27L2	Q9H2X8	130 aa		13.6	□□□□□ -0.23
COL7A1-208	ENST00000470076	PIPOX	Q9P0Z9	390 aa		13.6	□□□□□ -0.23
COL7A1-208	ENST00000470076	RAB29	O14966	203 aa		13.59	□□□□□ -0.23
COL7A1-208	ENST00000470076	NAPSA	O96009	420 aa		13.59	□□□□□ -0.23
COL7A1-208	ENST00000470076	HTR2C	P28335	458 aa		13.59	□□□□□ -0.23
COL7A1-208	ENST00000470076	RBM48	Q5RL73	367 aa	Known RBP	13.59	□□□□□ -0.23
COL7A1-208	ENST00000470076	FAM27D1	Q5T7N8	215 aa		13.59	□□□□□ -0.23
COL7A1-208	ENST00000470076	RNLS	Q5VYX0	342 aa		13.59	□□□□□ -0.23
COL7A1-208	ENST00000470076	LRRTM1	Q86UE6	522 aa		13.59	□□□□□ -0.23
COL7A1-208	ENST00000470076	SVOP	Q8N4V2	548 aa		13.59	□□□□□ -0.23
COL7A1-208	ENST00000470076	MINDY2	Q8NBR6	621 aa		13.59	□□□□□ -0.23
COL7A1-208	ENST00000470076	IL1F10	Q8WWZ1	152 aa		13.59	□□□□□ -0.23
COL7A1-208	ENST00000470076	MND1	Q9BWT6	205 aa		13.59	□□□□□ -0.23
COL7A1-208	ENST00000470076	TM2D1	Q9BX74	207 aa		13.59	□□□□□ -0.23
COL7A1-208	ENST00000470076	GHITM	Q9H3K2	345 aa		13.59	□□□□□ -0.23
COL7A1-208	ENST00000470076	GNB1	P62873	340 aa		13.58	□□□□□ -0.24
COL7A1-208	ENST00000470076	OGFRL1	Q5TC84	451 aa	Predicted RBP	13.58	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms