RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 NUP50Q9UKX7 468 aa6.37□□□□□ -1.39
COL6A3-208ENST00000468792 FZR1Q9UM11 496 aa6.37□□□□□ -1.39
COL6A3-208ENST00000468792 LAMP3Q9UQV4 416 aa6.37□□□□□ -1.39
COL6A3-208ENST00000468792 RCL1Q9Y2P8 373 aaKnown RBP6.37□□□□□ -1.39
COL6A3-208ENST00000468792 RNF115Q9Y4L5 304 aa6.37□□□□□ -1.39
COL6A3-208ENST00000468792 LSM5Q9Y4Y9 91 aaKnown RBP6.37□□□□□ -1.39
COL6A3-208ENST00000468792 PIEZO2Q9H5I5 2752 aa6.37□□□□□ -1.39
COL6A3-208ENST00000468792 SPTBN2O15020 2390 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 POLEQ07864 2286 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 CADP27708 2225 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 ODAMA1E959 279 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 DPRXA6NFQ7 191 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 FAM90A9PA6NNJ1 464 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 KIAA1324LA8MWY0 1029 aaPredicted RBP6.36□□□□□ -1.39
COL6A3-208ENST00000468792 ADAM20O43506 726 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 FSTL3O95633 263 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 LY86O95711 162 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 IGHV1-46P01743 117 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 THBDP07204 575 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 P0C879 139 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 TNFRSF1AP19438 455 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 GABRA2P47869 451 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 CASP6P55212 293 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 BLOC1S1P78537 153 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 AESQ08117 197 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 KLRB1Q12918 225 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 CATR1Q13166 79 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 ZNF266Q14584 549 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 ZNF585BQ52M93 769 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 STUMQ69YW2 141 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 RPL7L1Q6DKI1 246 aaKnown RBP6.36□□□□□ -1.39
COL6A3-208ENST00000468792 IL34Q6ZMJ4 242 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 C22orf34Q6ZV56 151 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 C5orf24Q7Z6I8 188 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 COMMD1Q8N668 190 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 ST6GALNAC3Q8NDV1 305 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 CD300LFQ8TDQ1 290 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 CORO2AQ92828 525 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 HSD17B10Q99714 261 aaKnown RBP6.36□□□□□ -1.39
COL6A3-208ENST00000468792 AGMATQ9BSE5 352 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 ZC4H2Q9NQZ6 224 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 PARP11Q9NR21 331 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 UFSP2Q9NUQ7 469 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 LUZP4Q9P127 313 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 MMP24Q9Y5R2 645 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 WSB1Q9Y6I7 421 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 PLCE1Q9P212 2302 aa6.36□□□□□ -1.39
COL6A3-208ENST00000468792 ZGRF1Q86YA3 2104 aa6.35□□□□□ -1.39
COL6A3-208ENST00000468792 CHD3Q12873 2000 aaKnown RBP6.35□□□□□ -1.39
COL6A3-208ENST00000468792 TRIM77I1YAP6 450 aa6.35□□□□□ -1.39
COL6A3-208ENST00000468792 TOR1AO14656 332 aa6.35□□□□□ -1.39
COL6A3-208ENST00000468792 RBFOX2O43251 390 aaKnown RBP eCLIP6.35□□□□□ -1.39
COL6A3-208ENST00000468792 KCNAB3O43448 404 aa6.35□□□□□ -1.39
COL6A3-208ENST00000468792 SCAF4O95104 1147 aaKnown RBP6.35□□□□□ -1.39
COL6A3-208ENST00000468792 IGKV1-39P01597 117 aa6.35□□□□□ -1.39
COL6A3-208ENST00000468792 IGKV1D-39P04432 117 aa6.35□□□□□ -1.39
COL6A3-208ENST00000468792 OR8U9P0C7N5 309 aa6.35□□□□□ -1.39
COL6A3-208ENST00000468792 SPP1P10451 314 aa6.35□□□□□ -1.39
COL6A3-208ENST00000468792 SFTPCP11686 197 aa6.35□□□□□ -1.39
COL6A3-208ENST00000468792 EGR1P18146 543 aa6.35□□□□□ -1.39
COL6A3-208ENST00000468792 CA7P43166 264 aa6.35□□□□□ -1.39
COL6A3-208ENST00000468792 GLIPR1P48060 266 aa6.35□□□□□ -1.39
COL6A3-208ENST00000468792 ASCL1P50553 236 aa6.35□□□□□ -1.39
COL6A3-208ENST00000468792 TNFAIP6P98066 277 aaPredicted RBP6.35□□□□□ -1.39
COL6A3-208ENST00000468792 EFNB3Q15768 340 aa6.35□□□□□ -1.39
COL6A3-208ENST00000468792 ADIPOQQ15848 244 aa6.35□□□□□ -1.39
COL6A3-208ENST00000468792 AARDQ4LEZ3 155 aa6.35□□□□□ -1.39
COL6A3-208ENST00000468792 MIDNQ504T8 468 aa6.35□□□□□ -1.39
COL6A3-208ENST00000468792 ZNF788Q6ZQV5 615 aa6.35□□□□□ -1.39
COL6A3-208ENST00000468792 MOGAT3Q86VF5 341 aa6.35□□□□□ -1.39
COL6A3-208ENST00000468792 TMEM252Q8N6L7 170 aa6.35□□□□□ -1.39
COL6A3-208ENST00000468792 KDF1Q8NAX2 398 aaPredicted RBP6.35□□□□□ -1.39
COL6A3-208ENST00000468792 ZNF436-AS1Q8NC38 126 aaPredicted RBP6.35□□□□□ -1.39
COL6A3-208ENST00000468792 OR10A7Q8NGE5 316 aa6.35□□□□□ -1.39
COL6A3-208ENST00000468792 OR13A1Q8NGR1 328 aa6.35□□□□□ -1.39
COL6A3-208ENST00000468792 OR8U1Q8NH10 309 aa6.35□□□□□ -1.39
COL6A3-208ENST00000468792 OR1L1Q8NH94 360 aa6.35□□□□□ -1.39
COL6A3-208ENST00000468792 TMED6Q8WW62 240 aa6.35□□□□□ -1.39
COL6A3-208ENST00000468792 ITLN1Q8WWA0 313 aa6.35□□□□□ -1.39
COL6A3-208ENST00000468792 ARL11Q969Q4 196 aa6.35□□□□□ -1.39
COL6A3-208ENST00000468792 GPR146Q96CH1 333 aa6.35□□□□□ -1.39
COL6A3-208ENST00000468792 C14orf79Q96F83 325 aa6.35□□□□□ -1.39
COL6A3-208ENST00000468792 MMP26Q9NRE1 261 aa6.35□□□□□ -1.39
COL6A3-208ENST00000468792 RBM7Q9Y580 266 aaKnown RBP6.35□□□□□ -1.39
COL6A3-208ENST00000468792 LRRC30A6NM36 301 aa6.34□□□□□ -1.39
COL6A3-208ENST00000468792 C17orf100A8MU93 164 aa6.34□□□□□ -1.39
COL6A3-208ENST00000468792 UMAD1C9J7I0 102 aa6.34□□□□□ -1.39
COL6A3-208ENST00000468792 ABCD4O14678 606 aa6.34□□□□□ -1.39
COL6A3-208ENST00000468792 SIAH2O43255 324 aa6.34□□□□□ -1.39
COL6A3-208ENST00000468792 SPRY3O43610 288 aa6.34□□□□□ -1.39
COL6A3-208ENST00000468792 SCGB1D2O95969 90 aa6.34□□□□□ -1.39
COL6A3-208ENST00000468792 FAM87AP0C7U9 286 aa6.34□□□□□ -1.39
COL6A3-208ENST00000468792 DANCRP0C864 163 aa6.34□□□□□ -1.39
COL6A3-208ENST00000468792 CEBPDP49716 269 aaPredicted RBP6.34□□□□□ -1.39
COL6A3-208ENST00000468792 RAB7AP51149 207 aa6.34□□□□□ -1.39
COL6A3-208ENST00000468792 F2RL1P55085 397 aa6.34□□□□□ -1.39
COL6A3-208ENST00000468792 PAX9P55771 341 aa6.34□□□□□ -1.39
COL6A3-208ENST00000468792 POLR2GP62487 172 aaKnown RBP eCLIP6.34□□□□□ -1.39
COL6A3-208ENST00000468792 RPL23AP62750 156 aaKnown RBP6.34□□□□□ -1.39
COL6A3-208ENST00000468792 VAMP2P63027 116 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms