RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 CMSS1Q9BQ75 279 aaKnown RBP12.1□□□□□ -0.47
LIMS3-201ENST00000437679 HDHD3Q9BSH5 251 aaPredicted RBP12.1□□□□□ -0.47
LIMS3-201ENST00000437679 C12orf4Q9NQ89 552 aa12.1□□□□□ -0.47
LIMS3-201ENST00000437679 METTL21EPA6NDL7 271 aa12.09□□□□□ -0.47
LIMS3-201ENST00000437679 LANCL1O43813 399 aa12.09□□□□□ -0.47
LIMS3-201ENST00000437679 CD28P10747 220 aa12.09□□□□□ -0.47
LIMS3-201ENST00000437679 RAB6AP20340 208 aa12.09□□□□□ -0.47
LIMS3-201ENST00000437679 GADD45AP24522 165 aa12.09□□□□□ -0.47
LIMS3-201ENST00000437679 CD1BP29016 333 aa12.09□□□□□ -0.47
LIMS3-201ENST00000437679 MRPS15P82914 257 aaKnown RBP12.09□□□□□ -0.47
LIMS3-201ENST00000437679 PLA2G7Q13093 441 aa12.09□□□□□ -0.47
LIMS3-201ENST00000437679 NEDD8Q15843 81 aa12.09□□□□□ -0.47
LIMS3-201ENST00000437679 HIST2H2BDQ6DRA6 164 aa12.09□□□□□ -0.47
LIMS3-201ENST00000437679 TPRA1Q86W33 373 aa12.09□□□□□ -0.47
LIMS3-201ENST00000437679 OR5AU1Q8NGC0 362 aa12.09□□□□□ -0.47
LIMS3-201ENST00000437679 FAM110DQ8TAY7 271 aaPredicted RBP12.09□□□□□ -0.47
LIMS3-201ENST00000437679 WIPF2Q8TF74 440 aaPredicted RBP12.09□□□□□ -0.47
LIMS3-201ENST00000437679 RAB3CQ96E17 227 aa12.09□□□□□ -0.47
LIMS3-201ENST00000437679 EAF1Q96JC9 268 aaPredicted RBP12.09□□□□□ -0.47
LIMS3-201ENST00000437679 VWFP04275 2813 aa12.08□□□□□ -0.48
LIMS3-201ENST00000437679 SMIM30A4D0T7 59 aa12.08□□□□□ -0.48
LIMS3-201ENST00000437679 NCBP2LA6PVI3 153 aaKnown RBP12.08□□□□□ -0.48
LIMS3-201ENST00000437679 NOTOA8MTQ0 251 aa12.08□□□□□ -0.48
LIMS3-201ENST00000437679 CD3GP09693 182 aa12.08□□□□□ -0.48
LIMS3-201ENST00000437679 HLA-DRB3P79483 266 aa12.08□□□□□ -0.48
LIMS3-201ENST00000437679 NSUN5P1Q3KNT7 163 aa12.08□□□□□ -0.48
LIMS3-201ENST00000437679 PLAC9Q5JTB6 97 aa12.08□□□□□ -0.48
LIMS3-201ENST00000437679 Q6ZPA2 131 aa12.08□□□□□ -0.48
LIMS3-201ENST00000437679 C5orf56Q8N8D9 126 aa12.08□□□□□ -0.48
LIMS3-201ENST00000437679 OR10R2Q8NGX6 335 aa12.08□□□□□ -0.48
LIMS3-201ENST00000437679 KCTD7Q96MP8 289 aa12.08□□□□□ -0.48
LIMS3-201ENST00000437679 CHCHD6Q9BRQ6 235 aa12.08□□□□□ -0.48
LIMS3-201ENST00000437679 OR51E2Q9H255 320 aa12.08□□□□□ -0.48
LIMS3-201ENST00000437679 Q9N2K0 584 aa12.08□□□□□ -0.48
LIMS3-201ENST00000437679 A0A0B4J203 849 aa12.07□□□□□ -0.48
LIMS3-201ENST00000437679 HSPA12AO43301 675 aa12.07□□□□□ -0.48
LIMS3-201ENST00000437679 MOSP00540 346 aa12.07□□□□□ -0.48
LIMS3-201ENST00000437679 SLC2A2P11168 524 aaPredicted RBP12.07□□□□□ -0.48
LIMS3-201ENST00000437679 CD36P16671 472 aa12.07□□□□□ -0.48
LIMS3-201ENST00000437679 MOGAT2Q3SYC2 334 aa12.07□□□□□ -0.48
LIMS3-201ENST00000437679 NR2C2APQ86WQ0 139 aa12.07□□□□□ -0.48
LIMS3-201ENST00000437679 NDUFA11Q86Y39 141 aa12.07□□□□□ -0.48
LIMS3-201ENST00000437679 PTX4Q96A99 478 aa12.07□□□□□ -0.48
LIMS3-201ENST00000437679 CITED2Q99967 270 aaPredicted RBP12.07□□□□□ -0.48
LIMS3-201ENST00000437679 VCX3AQ9NNX9 186 aa12.07□□□□□ -0.48
LIMS3-201ENST00000437679 SLC23A1Q9UHI7 598 aa12.07□□□□□ -0.48
LIMS3-201ENST00000437679 LOC100506127A0A0U1RQW1 187 aa12.06□□□□□ -0.48
LIMS3-201ENST00000437679 ZNF736B4DX44 427 aaPredicted RBP12.06□□□□□ -0.48
LIMS3-201ENST00000437679 ZBTB25P24278 435 aa12.06□□□□□ -0.48
LIMS3-201ENST00000437679 ODF3L1Q8IXM7 274 aa12.06□□□□□ -0.48
LIMS3-201ENST00000437679 Q8N6K4 173 aa12.06□□□□□ -0.48
LIMS3-201ENST00000437679 OR4X2Q8NGF9 303 aa12.06□□□□□ -0.48
LIMS3-201ENST00000437679 OR8H1Q8NGG4 311 aa12.06□□□□□ -0.48
LIMS3-201ENST00000437679 ATG5Q9H1Y0 275 aa12.06□□□□□ -0.48
LIMS3-201ENST00000437679 PIPOXQ9P0Z9 390 aa12.06□□□□□ -0.48
LIMS3-201ENST00000437679 DAPK2Q9UIK4 370 aa12.06□□□□□ -0.48
LIMS3-201ENST00000437679 CMYA5Q8N3K9 4069 aa12.06□□□□□ -0.48
LIMS3-201ENST00000437679 A0A075B6Q4 140 aa12.05□□□□□ -0.48
LIMS3-201ENST00000437679 A0A087WXM4 84 aa12.05□□□□□ -0.48
LIMS3-201ENST00000437679 SAA2-SAA4A0A096LPE2 208 aa12.05□□□□□ -0.48
LIMS3-201ENST00000437679 SERPINE3A8MV23 424 aa12.05□□□□□ -0.48
LIMS3-201ENST00000437679 TRDCB7Z8K6 153 aa12.05□□□□□ -0.48
LIMS3-201ENST00000437679 RAB27BO00194 218 aa12.05□□□□□ -0.48
LIMS3-201ENST00000437679 RAB29O14966 203 aa12.05□□□□□ -0.48
LIMS3-201ENST00000437679 ST8SIA5O15466 376 aa12.05□□□□□ -0.48
LIMS3-201ENST00000437679 TNFAIP8O95379 198 aa12.05□□□□□ -0.48
LIMS3-201ENST00000437679 OPN1MWP04001 364 aa12.05□□□□□ -0.48
LIMS3-201ENST00000437679 SCTP09683 121 aa12.05□□□□□ -0.48
LIMS3-201ENST00000437679 SAA2P0DJI9 122 aaPredicted RBP12.05□□□□□ -0.48
LIMS3-201ENST00000437679 OPN1MW2P0DN77 364 aa12.05□□□□□ -0.48
LIMS3-201ENST00000437679 OPN1MW3P0DN78 364 aa12.05□□□□□ -0.48
LIMS3-201ENST00000437679 HIST1H1DP16402 221 aaKnown RBP12.05□□□□□ -0.48
LIMS3-201ENST00000437679 GNB3P16520 340 aa12.05□□□□□ -0.48
LIMS3-201ENST00000437679 SDC2P34741 201 aa12.05□□□□□ -0.48
LIMS3-201ENST00000437679 CEACAM6P40199 344 aa12.05□□□□□ -0.48
LIMS3-201ENST00000437679 OR3A3P47888 321 aa12.05□□□□□ -0.48
LIMS3-201ENST00000437679 LSAMPQ13449 338 aa12.05□□□□□ -0.48
LIMS3-201ENST00000437679 SFXN4Q6P4A7 337 aa12.05□□□□□ -0.48
LIMS3-201ENST00000437679 ZNF833PQ6ZTB9 187 aa12.05□□□□□ -0.48
LIMS3-201ENST00000437679 EDARADDQ8WWZ3 215 aa12.05□□□□□ -0.48
LIMS3-201ENST00000437679 S1PR3Q99500 378 aa12.05□□□□□ -0.48
LIMS3-201ENST00000437679 MRPL20Q9BYC9 149 aaKnown RBP12.05□□□□□ -0.48
LIMS3-201ENST00000437679 IFI27L2Q9H2X8 130 aa12.05□□□□□ -0.48
LIMS3-201ENST00000437679 GHITMQ9H3K2 345 aa12.05□□□□□ -0.48
LIMS3-201ENST00000437679 LIN7CQ9NUP9 197 aaKnown RBP12.05□□□□□ -0.48
LIMS3-201ENST00000437679 KCNK7Q9Y2U2 307 aa12.05□□□□□ -0.48
LIMS3-201ENST00000437679 PSMB11A5LHX3 300 aa12.04□□□□□ -0.48
LIMS3-201ENST00000437679 MFNGO00587 321 aa12.04□□□□□ -0.48
LIMS3-201ENST00000437679 ITGB1BP1O14713 200 aa12.04□□□□□ -0.48
LIMS3-201ENST00000437679 TALDO1P37837 337 aa12.04□□□□□ -0.48
LIMS3-201ENST00000437679 CD83Q01151 205 aa12.04□□□□□ -0.48
LIMS3-201ENST00000437679 MXD1Q05195 221 aa12.04□□□□□ -0.48
LIMS3-201ENST00000437679 ARFRP1Q13795 201 aa12.04□□□□□ -0.48
LIMS3-201ENST00000437679 ARL6IP1Q15041 203 aa12.04□□□□□ -0.48
LIMS3-201ENST00000437679 TIMM50Q3ZCQ8 353 aa12.04□□□□□ -0.48
LIMS3-201ENST00000437679 FAM71F2Q6NXP2 309 aa12.04□□□□□ -0.48
LIMS3-201ENST00000437679 SLC35E3Q7Z769 313 aa12.04□□□□□ -0.48
LIMS3-201ENST00000437679 FOXRED2Q8IWF2 684 aa12.04□□□□□ -0.48
LIMS3-201ENST00000437679 Q8N9W7 124 aa12.04□□□□□ -0.48
LIMS3-201ENST00000437679 TSPAN14Q8NG11 270 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms