RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 NABP2Q9BQ15 211 aa10.61□□□□□ -0.71
VPS29-201ENST00000360579 MRPL20Q9BYC9 149 aaKnown RBP10.61□□□□□ -0.71
VPS29-201ENST00000360579 TMEM138Q9NPI0 162 aa10.61□□□□□ -0.71
VPS29-201ENST00000360579 ETAA1Q9NY74 926 aa10.61□□□□□ -0.71
VPS29-201ENST00000360579 TAS2R4Q9NYW5 299 aa10.61□□□□□ -0.71
VPS29-201ENST00000360579 EXOGQ9Y2C4 368 aaKnown RBP10.61□□□□□ -0.71
VPS29-201ENST00000360579 GMPPBQ9Y5P6 360 aa10.61□□□□□ -0.71
VPS29-201ENST00000360579 FRAS1Q86XX4 4008 aa10.61□□□□□ -0.71
VPS29-201ENST00000360579 FCGR1AP12314 374 aa10.6□□□□□ -0.71
VPS29-201ENST00000360579 LORP23490 312 aaPredicted RBP10.6□□□□□ -0.71
VPS29-201ENST00000360579 GBX2P52951 348 aaPredicted RBP10.6□□□□□ -0.71
VPS29-201ENST00000360579 TPPP2P59282 170 aa10.6□□□□□ -0.71
VPS29-201ENST00000360579 SNRPGP62308 76 aaKnown RBP10.6□□□□□ -0.71
VPS29-201ENST00000360579 CX3CL1P78423 397 aa10.6□□□□□ -0.71
VPS29-201ENST00000360579 NDPQ00604 133 aa10.6□□□□□ -0.71
VPS29-201ENST00000360579 PLGLAQ15195 96 aa10.6□□□□□ -0.71
VPS29-201ENST00000360579 LRRC36Q1X8D7 754 aa10.6□□□□□ -0.71
VPS29-201ENST00000360579 AKIRIN2Q53H80 203 aa10.6□□□□□ -0.71
VPS29-201ENST00000360579 ACTBL2Q562R1 376 aa10.6□□□□□ -0.71
VPS29-201ENST00000360579 DDI2Q5TDH0 399 aa10.6□□□□□ -0.71
VPS29-201ENST00000360579 ZNF554Q86TJ5 538 aa10.6□□□□□ -0.71
VPS29-201ENST00000360579 LHFPL3Q86UP9 236 aa10.6□□□□□ -0.71
VPS29-201ENST00000360579 GAPTQ8N292 157 aa10.6□□□□□ -0.71
VPS29-201ENST00000360579 OR4K15Q8NH41 348 aa10.6□□□□□ -0.71
VPS29-201ENST00000360579 OR1L1Q8NH94 360 aa10.6□□□□□ -0.71
VPS29-201ENST00000360579 ABHD5Q8WTS1 349 aa10.6□□□□□ -0.71
VPS29-201ENST00000360579 CASTOR1Q8WTX7 329 aa10.6□□□□□ -0.71
VPS29-201ENST00000360579 RHOVQ96L33 236 aa10.6□□□□□ -0.71
VPS29-201ENST00000360579 ISG20L2Q9H9L3 353 aaKnown RBP10.6□□□□□ -0.71
VPS29-201ENST00000360579 RANGRFQ9HD47 186 aaPredicted RBP10.6□□□□□ -0.71
VPS29-201ENST00000360579 KCNIP1Q9NZI2 227 aa10.6□□□□□ -0.71
VPS29-201ENST00000360579 RCC2Q9P258 522 aaKnown RBP10.6□□□□□ -0.71
VPS29-201ENST00000360579 JPT1Q9UK76 154 aa10.6□□□□□ -0.71
VPS29-201ENST00000360579 FBXO7Q9Y3I1 522 aa10.6□□□□□ -0.71
VPS29-201ENST00000360579 NUBP2Q9Y5Y2 271 aa10.6□□□□□ -0.71
VPS29-201ENST00000360579 A3GALT2U3KPV4 340 aa10.6□□□□□ -0.71
VPS29-201ENST00000360579 RGS11O94810 467 aa10.59□□□□□ -0.71
VPS29-201ENST00000360579 SOX2P48431 317 aa10.59□□□□□ -0.71
VPS29-201ENST00000360579 MOGAT2Q3SYC2 334 aa10.59□□□□□ -0.71
VPS29-201ENST00000360579 SLC22A6Q4U2R8 563 aa10.59□□□□□ -0.71
VPS29-201ENST00000360579 FAM71F2Q6NXP2 309 aa10.59□□□□□ -0.71
VPS29-201ENST00000360579 ZNF833PQ6ZTB9 187 aa10.59□□□□□ -0.71
VPS29-201ENST00000360579 PPP1R27Q86WC6 154 aa10.59□□□□□ -0.71
VPS29-201ENST00000360579 ODF3L1Q8IXM7 274 aa10.59□□□□□ -0.71
VPS29-201ENST00000360579 GPR148Q8TDV2 347 aa10.59□□□□□ -0.71
VPS29-201ENST00000360579 TMEM106AQ96A25 262 aa10.59□□□□□ -0.71
VPS29-201ENST00000360579 LGALS12Q96DT0 336 aa10.59□□□□□ -0.71
VPS29-201ENST00000360579 MRPS24Q96EL2 167 aaKnown RBP10.59□□□□□ -0.71
VPS29-201ENST00000360579 TMED9Q9BVK6 235 aa10.59□□□□□ -0.71
VPS29-201ENST00000360579 TAF9BQ9HBM6 251 aa10.59□□□□□ -0.71
VPS29-201ENST00000360579 CNOT2Q9NZN8 540 aaKnown RBP10.59□□□□□ -0.71
VPS29-201ENST00000360579 AP4S1Q9Y587 144 aa10.59□□□□□ -0.71
VPS29-201ENST00000360579 RRHO14718 337 aa10.58□□□□□ -0.72
VPS29-201ENST00000360579 SLC25A17O43808 307 aa10.58□□□□□ -0.72
VPS29-201ENST00000360579 FADS2O95864 444 aaKnown RBP10.58□□□□□ -0.72
VPS29-201ENST00000360579 TFAP2AP05549 437 aa10.58□□□□□ -0.72
VPS29-201ENST00000360579 RCC1P18754 421 aaPredicted RBP10.58□□□□□ -0.72
VPS29-201ENST00000360579 BDKRB2P30411 391 aa10.58□□□□□ -0.72
VPS29-201ENST00000360579 ADARB1P78563 741 aaKnown RBP10.58□□□□□ -0.72
VPS29-201ENST00000360579 HTD2P86397 168 aa10.58□□□□□ -0.72
VPS29-201ENST00000360579 LY6G6FQ5SQ64 297 aa10.58□□□□□ -0.72
VPS29-201ENST00000360579 RAB12Q6IQ22 244 aa10.58□□□□□ -0.72
VPS29-201ENST00000360579 LCN12Q6JVE5 192 aa10.58□□□□□ -0.72
VPS29-201ENST00000360579 UNQ5815/PRO19632Q6UWF5 114 aa10.58□□□□□ -0.72
VPS29-201ENST00000360579 AMIGO2Q86SJ2 522 aa10.58□□□□□ -0.72
VPS29-201ENST00000360579 MS4A10Q96PG2 267 aa10.58□□□□□ -0.72
VPS29-201ENST00000360579 FBXL15Q9H469 300 aa10.58□□□□□ -0.72
VPS29-201ENST00000360579 OAZ3Q9UMX2 235 aa10.58□□□□□ -0.72
VPS29-201ENST00000360579 HERC2O95714 4834 aa10.58□□□□□ -0.72
VPS29-201ENST00000360579 E9PI62 339 aa10.57□□□□□ -0.72
VPS29-201ENST00000360579 YPEL1O60688 119 aa10.57□□□□□ -0.72
VPS29-201ENST00000360579 SC5DO75845 299 aa10.57□□□□□ -0.72
VPS29-201ENST00000360579 TRGV3P03979 118 aa10.57□□□□□ -0.72
VPS29-201ENST00000360579 GLAP06280 429 aa10.57□□□□□ -0.72
VPS29-201ENST00000360579 EGR2P11161 476 aaPredicted RBP10.57□□□□□ -0.72
VPS29-201ENST00000360579 PPP1CCP36873 323 aaKnown RBP10.57□□□□□ -0.72
VPS29-201ENST00000360579 Q8N402 240 aa10.57□□□□□ -0.72
VPS29-201ENST00000360579 OR2AK2Q8NG84 335 aa10.57□□□□□ -0.72
VPS29-201ENST00000360579 OR9G4Q8NGQ1 327 aa10.57□□□□□ -0.72
VPS29-201ENST00000360579 YPEL2Q96QA6 119 aa10.57□□□□□ -0.72
VPS29-201ENST00000360579 MBNL3Q9NUK0 354 aaKnown RBP10.57□□□□□ -0.72
VPS29-201ENST00000360579 ERVK13-1Q9NX77 482 aa10.57□□□□□ -0.72
VPS29-201ENST00000360579 LRRC42Q9Y546 428 aa10.57□□□□□ -0.72
VPS29-201ENST00000360579 ORC6Q9Y5N6 252 aa10.57□□□□□ -0.72
VPS29-201ENST00000360579 PEX16Q9Y5Y5 336 aa10.57□□□□□ -0.72
VPS29-201ENST00000360579 CEPT1Q9Y6K0 416 aa10.57□□□□□ -0.72
VPS29-201ENST00000360579 SAA2-SAA4A0A096LPE2 208 aa10.56□□□□□ -0.72
VPS29-201ENST00000360579 A0A0G2JLM5 398 aa10.56□□□□□ -0.72
VPS29-201ENST00000360579 C13orf42A0A1B0GVH6 325 aa10.56□□□□□ -0.72
VPS29-201ENST00000360579 A0A1W2PP11 408 aa10.56□□□□□ -0.72
VPS29-201ENST00000360579 SHISA3A0PJX4 238 aa10.56□□□□□ -0.72
VPS29-201ENST00000360579 OR5H14A6NHG9 310 aa10.56□□□□□ -0.72
VPS29-201ENST00000360579 FAM90A7PA6NKC0 464 aa10.56□□□□□ -0.72
VPS29-201ENST00000360579 FAM90A23PA8MXZ1 464 aa10.56□□□□□ -0.72
VPS29-201ENST00000360579 RBBP9O75884 186 aa10.56□□□□□ -0.72
VPS29-201ENST00000360579 SAA2P0DJI9 122 aaPredicted RBP10.56□□□□□ -0.72
VPS29-201ENST00000360579 MC5RP33032 325 aa10.56□□□□□ -0.72
VPS29-201ENST00000360579 OR3A3P47888 321 aa10.56□□□□□ -0.72
VPS29-201ENST00000360579 RIPK1Q13546 671 aa10.56□□□□□ -0.72
VPS29-201ENST00000360579 KLF5Q13887 457 aaPredicted RBP10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms