RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 DBHP09172 617 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 CATSPERDQ86XM0 798 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 GJC3Q8NFK1 279 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 TMEM230Q96A57 120 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 C4orf45Q96LM5 186 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 SLC2A9Q9NRM0 540 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 R4GMQ9 66 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 IGF2RP11717 2491 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 A0A0U1RQK1 487 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 ZNF878C9JN71 531 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 RER1O15258 196 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 SRP19P09132 144 aaKnown RBP8.63□□□□□ -1.03
SYNE1-203ENST00000354674 HLA-DRB3P79483 266 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 SRSF4Q08170 494 aaKnown RBP8.63□□□□□ -1.03
SYNE1-203ENST00000354674 KLRB1Q12918 225 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 KRTAP27-1Q3LI81 207 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 ZNF596Q8TC21 504 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 BOD1Q96IK1 185 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 TXN2Q99757 166 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 COMMD4Q9H0A8 199 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 TP73-AS1Q9UF72 201 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 IL19Q9UHD0 177 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 AK3Q9UIJ7 227 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 SLC7A11Q9UPY5 501 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 POMT1Q9Y6A1 747 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 TRBV6-7A0A0A0MS04 114 aa8.62□□□□□ -1.03
SYNE1-203ENST00000354674 CLDN34H7C241 214 aa8.62□□□□□ -1.03
SYNE1-203ENST00000354674 HMGB3O15347 200 aaKnown RBP8.62□□□□□ -1.03
SYNE1-203ENST00000354674 HLA-GP17693 338 aa8.62□□□□□ -1.03
SYNE1-203ENST00000354674 TIMP3P35625 211 aa8.62□□□□□ -1.03
SYNE1-203ENST00000354674 SUPT4H1P63272 117 aaKnown RBP8.62□□□□□ -1.03
SYNE1-203ENST00000354674 RNF144BQ7Z419 303 aa8.62□□□□□ -1.03
SYNE1-203ENST00000354674 ABHD12BQ7Z5M8 362 aaPredicted RBP8.62□□□□□ -1.03
SYNE1-203ENST00000354674 C2orf50Q96LR7 162 aa8.62□□□□□ -1.03
SYNE1-203ENST00000354674 NICN1Q9BSH3 213 aa8.62□□□□□ -1.03
SYNE1-203ENST00000354674 G6PC2Q9NQR9 355 aa8.62□□□□□ -1.03
SYNE1-203ENST00000354674 PLSCR4Q9NRQ2 329 aa8.62□□□□□ -1.03
SYNE1-203ENST00000354674 FAM206AQ9NX38 181 aa8.62□□□□□ -1.03
SYNE1-203ENST00000354674 PRSS50Q9UI38 385 aa8.62□□□□□ -1.03
SYNE1-203ENST00000354674 CHTOPQ9Y3Y2 248 aaKnown RBP8.62□□□□□ -1.03
SYNE1-203ENST00000354674 FIGNL2A6NMB9 653 aa8.62□□□□□ -1.03
SYNE1-203ENST00000354674 TMEM212A6NML5 194 aa8.62□□□□□ -1.03
SYNE1-203ENST00000354674 F6UZH7 168 aa8.62□□□□□ -1.03
SYNE1-203ENST00000354674 TNFSF13O75888 250 aa8.62□□□□□ -1.03
SYNE1-203ENST00000354674 CGAP01215 116 aa8.62□□□□□ -1.03
SYNE1-203ENST00000354674 IL2RAP01589 272 aa8.62□□□□□ -1.03
SYNE1-203ENST00000354674 IGHV3-9P01782 118 aa8.62□□□□□ -1.03
SYNE1-203ENST00000354674 OTX1P32242 354 aaPredicted RBP8.62□□□□□ -1.03
SYNE1-203ENST00000354674 FOXG1P55316 489 aaPredicted RBP8.62□□□□□ -1.03
SYNE1-203ENST00000354674 FAM3BP58499 235 aaPredicted RBP8.62□□□□□ -1.03
SYNE1-203ENST00000354674 SELENOTP62341 195 aa8.62□□□□□ -1.03
SYNE1-203ENST00000354674 RPL19P84098 196 aaKnown RBP8.62□□□□□ -1.03
SYNE1-203ENST00000354674 MFGE8Q08431 387 aaPredicted RBP8.62□□□□□ -1.03
SYNE1-203ENST00000354674 HIKESHIQ53FT3 197 aa8.62□□□□□ -1.03
SYNE1-203ENST00000354674 WDR38Q5JTN6 314 aa8.62□□□□□ -1.03
SYNE1-203ENST00000354674 MRPL24Q96A35 216 aaKnown RBP8.62□□□□□ -1.03
SYNE1-203ENST00000354674 BTF3L4Q96K17 158 aa8.62□□□□□ -1.03
SYNE1-203ENST00000354674 CSTL1Q9H114 145 aa8.62□□□□□ -1.03
SYNE1-203ENST00000354674 POLR1DQ9Y2S0 133 aa8.62□□□□□ -1.03
SYNE1-203ENST00000354674 EMC9Q9Y3B6 208 aa8.62□□□□□ -1.03
SYNE1-203ENST00000354674 MED12LQ86YW9 2145 aa8.62□□□□□ -1.03
SYNE1-203ENST00000354674 CACNA1GO43497 2377 aa8.61□□□□□ -1.03
SYNE1-203ENST00000354674 TRBV5-5A0A0J9YX44 114 aa8.61□□□□□ -1.03
SYNE1-203ENST00000354674 HSBP1L1C9JCN9 74 aa8.61□□□□□ -1.03
SYNE1-203ENST00000354674 H2BFMP0C1H6 154 aa8.61□□□□□ -1.03
SYNE1-203ENST00000354674 B4GALT1P15291 398 aa8.61□□□□□ -1.03
SYNE1-203ENST00000354674 HOXC12P31275 282 aa8.61□□□□□ -1.03
SYNE1-203ENST00000354674 MAS1LP35410 378 aa8.61□□□□□ -1.03
SYNE1-203ENST00000354674 GRB2P62993 217 aaKnown RBP8.61□□□□□ -1.03
SYNE1-203ENST00000354674 ARF1P84077 181 aaKnown RBP8.61□□□□□ -1.03
SYNE1-203ENST00000354674 RSPO1Q2MKA7 263 aaPredicted RBP8.61□□□□□ -1.03
SYNE1-203ENST00000354674 TMEM128Q5BJH2 165 aa8.61□□□□□ -1.03
SYNE1-203ENST00000354674 DNM1P46Q6ZS02 220 aa8.61□□□□□ -1.03
SYNE1-203ENST00000354674 BANF2Q9H503 90 aa8.61□□□□□ -1.03
SYNE1-203ENST00000354674 C12orf49Q9H741 205 aa8.61□□□□□ -1.03
SYNE1-203ENST00000354674 NCOR2Q9Y618 2525 aa8.61□□□□□ -1.03
SYNE1-203ENST00000354674 PPP5D1E7EU14 171 aa8.61□□□□□ -1.03
SYNE1-203ENST00000354674 SYNGR3O43761 229 aa8.61□□□□□ -1.03
SYNE1-203ENST00000354674 ISG15P05161 165 aa8.61□□□□□ -1.03
SYNE1-203ENST00000354674 HSD11B1P28845 292 aa8.61□□□□□ -1.03
SYNE1-203ENST00000354674 PRR30Q53SZ7 412 aaPredicted RBP8.61□□□□□ -1.03
SYNE1-203ENST00000354674 OR8G2PQ6IF36 304 aa8.61□□□□□ -1.03
SYNE1-203ENST00000354674 LCN15Q6UWW0 184 aa8.61□□□□□ -1.03
SYNE1-203ENST00000354674 BCL2L2Q92843 193 aaPredicted RBP8.61□□□□□ -1.03
SYNE1-203ENST00000354674 TECTBQ96PL2 329 aa8.61□□□□□ -1.03
SYNE1-203ENST00000354674 MIEN1Q9BRT3 115 aa8.61□□□□□ -1.03
SYNE1-203ENST00000354674 VAMP8Q9BV40 100 aa8.61□□□□□ -1.03
SYNE1-203ENST00000354674 CENPMQ9NSP4 180 aa8.61□□□□□ -1.03
SYNE1-203ENST00000354674 OR6C6A6NF89 314 aa8.61□□□□□ -1.03
SYNE1-203ENST00000354674 C22orf46C9J442 243 aa8.61□□□□□ -1.03
SYNE1-203ENST00000354674 PSG1P11464 419 aa8.61□□□□□ -1.03
SYNE1-203ENST00000354674 KLF3P57682 345 aaPredicted RBP8.61□□□□□ -1.03
SYNE1-203ENST00000354674 PCBD1P61457 104 aa8.61□□□□□ -1.03
SYNE1-203ENST00000354674 FOXF2Q12947 444 aa8.61□□□□□ -1.03
SYNE1-203ENST00000354674 ASPHD2Q6ICH7 369 aa8.61□□□□□ -1.03
SYNE1-203ENST00000354674 KLHL24Q6TFL4 600 aa8.61□□□□□ -1.03
SYNE1-203ENST00000354674 PCSK4Q6UW60 755 aa8.61□□□□□ -1.03
SYNE1-203ENST00000354674 Q6ZN92 141 aa8.61□□□□□ -1.03
SYNE1-203ENST00000354674 SGPP2Q8IWX5 399 aa8.61□□□□□ -1.03
SYNE1-203ENST00000354674 GCNT2Q8N0V5 402 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms