RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 IGLV2-14P01704 120 aa13.6□□□□□ -0.23
USHBP1-202ENST00000324554 HSPB1P04792 205 aaKnown RBP13.6□□□□□ -0.23
USHBP1-202ENST00000324554 CELA3BP08861 270 aa13.6□□□□□ -0.23
USHBP1-202ENST00000324554 TNFSF10P50591 281 aa13.6□□□□□ -0.23
USHBP1-202ENST00000324554 TBC1D28Q2M2D7 210 aa13.6□□□□□ -0.23
USHBP1-202ENST00000324554 THNSL2Q86YJ6 484 aa13.6□□□□□ -0.23
USHBP1-202ENST00000324554 OR10V1Q8NGI7 309 aa13.6□□□□□ -0.23
USHBP1-202ENST00000324554 Q8WTZ3 238 aa13.6□□□□□ -0.23
USHBP1-202ENST00000324554 RTL8AQ9BWD3 113 aa13.6□□□□□ -0.23
USHBP1-202ENST00000324554 DSPP15924 2871 aaKnown RBP13.59□□□□□ -0.23
USHBP1-202ENST00000324554 IGKV1-39P01597 117 aa13.59□□□□□ -0.23
USHBP1-202ENST00000324554 IGKV1D-39P04432 117 aa13.59□□□□□ -0.23
USHBP1-202ENST00000324554 SERPINE2P07093 398 aa13.59□□□□□ -0.23
USHBP1-202ENST00000324554 CXCL1P09341 107 aa13.59□□□□□ -0.23
USHBP1-202ENST00000324554 EIF2S3P41091 472 aaKnown RBP13.59□□□□□ -0.23
USHBP1-202ENST00000324554 TCEAL7Q9BRU2 100 aa13.59□□□□□ -0.23
USHBP1-202ENST00000324554 URGCP-MRPS24S4R325 110 aa13.59□□□□□ -0.23
USHBP1-202ENST00000324554 A0A1W2PR80 420 aa13.59□□□□□ -0.23
USHBP1-202ENST00000324554 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.59□□□□□ -0.23
USHBP1-202ENST00000324554 SIRPB1O00241 398 aa13.59□□□□□ -0.23
USHBP1-202ENST00000324554 SMPD2O60906 423 aa13.59□□□□□ -0.23
USHBP1-202ENST00000324554 MDH2P40926 338 aaKnown RBP13.59□□□□□ -0.23
USHBP1-202ENST00000324554 ERVFRD-1P60508 538 aa13.59□□□□□ -0.23
USHBP1-202ENST00000324554 TLE4Q04727 773 aa13.59□□□□□ -0.23
USHBP1-202ENST00000324554 ELOBQ15370 118 aa13.59□□□□□ -0.23
USHBP1-202ENST00000324554 TESK1Q15569 626 aa13.59□□□□□ -0.23
USHBP1-202ENST00000324554 OR8G1Q15617 311 aa13.59□□□□□ -0.23
USHBP1-202ENST00000324554 STX12Q86Y82 276 aa13.59□□□□□ -0.23
USHBP1-202ENST00000324554 TCTEX1D2Q8WW35 142 aa13.59□□□□□ -0.23
USHBP1-202ENST00000324554 HIPK2Q9H2X6 1198 aa13.59□□□□□ -0.23
USHBP1-202ENST00000324554 TREM2Q9NZC2 230 aa13.59□□□□□ -0.23
USHBP1-202ENST00000324554 SVILO95425 2214 aa13.58□□□□□ -0.24
USHBP1-202ENST00000324554 A0A1B0GU03 582 aa13.58□□□□□ -0.24
USHBP1-202ENST00000324554 LRP5LA4QPB2 252 aa13.58□□□□□ -0.24
USHBP1-202ENST00000324554 OR2H2O95918 312 aa13.58□□□□□ -0.24
USHBP1-202ENST00000324554 WNT2P09544 360 aa13.58□□□□□ -0.24
USHBP1-202ENST00000324554 SLC25A6P12236 298 aa13.58□□□□□ -0.24
USHBP1-202ENST00000324554 SOX8P57073 446 aa13.58□□□□□ -0.24
USHBP1-202ENST00000324554 RPL23AP62750 156 aaKnown RBP13.58□□□□□ -0.24
USHBP1-202ENST00000324554 PRR18Q8N4B5 295 aa13.58□□□□□ -0.24
USHBP1-202ENST00000324554 SCCPDHQ8NBX0 429 aa13.58□□□□□ -0.24
USHBP1-202ENST00000324554 RSG1Q9BU20 258 aa13.58□□□□□ -0.24
USHBP1-202ENST00000324554 OR2J1Q9GZK6 312 aa13.58□□□□□ -0.24
USHBP1-202ENST00000324554 A0A087WWC5 75 aa13.58□□□□□ -0.24
USHBP1-202ENST00000324554 YIF1AO95070 293 aa13.58□□□□□ -0.24
USHBP1-202ENST00000324554 ERVS71-1P61550 626 aa13.58□□□□□ -0.24
USHBP1-202ENST00000324554 ERVK11-1P61568 191 aa13.58□□□□□ -0.24
USHBP1-202ENST00000324554 KIAA0141Q14154 515 aaPredicted RBP13.58□□□□□ -0.24
USHBP1-202ENST00000324554 ZNF497Q6ZNH5 498 aa13.58□□□□□ -0.24
USHBP1-202ENST00000324554 MOB1BQ7L9L4 216 aa13.58□□□□□ -0.24
USHBP1-202ENST00000324554 RBMXL1Q96E39 390 aaKnown RBP13.58□□□□□ -0.24
USHBP1-202ENST00000324554 ZDHHC11Q9H8X9 412 aa13.58□□□□□ -0.24
USHBP1-202ENST00000324554 MIOXQ9UGB7 285 aa13.58□□□□□ -0.24
USHBP1-202ENST00000324554 J3QW42 95 aa13.57□□□□□ -0.24
USHBP1-202ENST00000324554 KLK10O43240 276 aa13.57□□□□□ -0.24
USHBP1-202ENST00000324554 ARL16Q0P5N6 197 aa13.57□□□□□ -0.24
USHBP1-202ENST00000324554 TVP23CQ96ET8 276 aa13.57□□□□□ -0.24
USHBP1-202ENST00000324554 NIPSNAP3BQ9BS92 247 aa13.57□□□□□ -0.24
USHBP1-202ENST00000324554 VSIRQ9H7M9 311 aa13.57□□□□□ -0.24
USHBP1-202ENST00000324554 CACNG5Q9UF02 275 aa13.57□□□□□ -0.24
USHBP1-202ENST00000324554 PIGBOS1A0A0B4J2F0 54 aa13.56□□□□□ -0.24
USHBP1-202ENST00000324554 IFITM10A6NMD0 228 aa13.56□□□□□ -0.24
USHBP1-202ENST00000324554 DFFBO76075 338 aa13.56□□□□□ -0.24
USHBP1-202ENST00000324554 PPP1CBP62140 327 aa13.56□□□□□ -0.24
USHBP1-202ENST00000324554 DPPA3Q6W0C5 159 aa13.56□□□□□ -0.24
USHBP1-202ENST00000324554 Q8IYB0 196 aa13.56□□□□□ -0.24
USHBP1-202ENST00000324554 UBALD1Q8TB05 177 aa13.56□□□□□ -0.24
USHBP1-202ENST00000324554 RPRMQ9NS64 109 aa13.56□□□□□ -0.24
USHBP1-202ENST00000324554 GNG13Q9P2W3 67 aa13.56□□□□□ -0.24
USHBP1-202ENST00000324554 TRAPPC2LQ9UL33 140 aa13.56□□□□□ -0.24
USHBP1-202ENST00000324554 POLDIP2Q9Y2S7 368 aa13.56□□□□□ -0.24
USHBP1-202ENST00000324554 CACNA1GO43497 2377 aa13.56□□□□□ -0.24
USHBP1-202ENST00000324554 TGIF2-C20orf24A0A0A6YYL0 155 aa13.56□□□□□ -0.24
USHBP1-202ENST00000324554 LOC102723971A0A1B0GUV8 181 aa13.56□□□□□ -0.24
USHBP1-202ENST00000324554 CDIPTO14735 213 aa13.56□□□□□ -0.24
USHBP1-202ENST00000324554 HBE1P02100 147 aa13.56□□□□□ -0.24
USHBP1-202ENST00000324554 IAPPP10997 89 aa13.56□□□□□ -0.24
USHBP1-202ENST00000324554 IDH3GP51553 393 aaPredicted RBP13.56□□□□□ -0.24
USHBP1-202ENST00000324554 ALKBH6Q3KRA9 238 aa13.56□□□□□ -0.24
USHBP1-202ENST00000324554 KHDC3LQ587J8 217 aa13.56□□□□□ -0.24
USHBP1-202ENST00000324554 SLC25A24Q6NUK1 477 aa13.56□□□□□ -0.24
USHBP1-202ENST00000324554 RNASE11Q8TAA1 199 aaKnown RBP13.56□□□□□ -0.24
USHBP1-202ENST00000324554 GMPPAQ96IJ6 420 aaPredicted RBP13.56□□□□□ -0.24
USHBP1-202ENST00000324554 RAB40CQ96S21 281 aa13.56□□□□□ -0.24
USHBP1-202ENST00000324554 OR51M1Q9H341 326 aa13.56□□□□□ -0.24
USHBP1-202ENST00000324554 PPP1R3CQ9UQK1 317 aa13.56□□□□□ -0.24
USHBP1-202ENST00000324554 CEP295Q9C0D2 2601 aa13.56□□□□□ -0.24
USHBP1-202ENST00000324554 IFNA5P01569 189 aa13.55□□□□□ -0.24
USHBP1-202ENST00000324554 IGKV1-5P01602 117 aa13.55□□□□□ -0.24
USHBP1-202ENST00000324554 PGA5P0DJD9 388 aa13.55□□□□□ -0.24
USHBP1-202ENST00000324554 FOXC1Q12948 553 aa13.55□□□□□ -0.24
USHBP1-202ENST00000324554 SSX7Q7RTT5 188 aa13.55□□□□□ -0.24
USHBP1-202ENST00000324554 TMEM178AQ8NBL3 297 aa13.55□□□□□ -0.24
USHBP1-202ENST00000324554 EDARADDQ8WWZ3 215 aa13.55□□□□□ -0.24
USHBP1-202ENST00000324554 LSM10Q969L4 123 aaKnown RBP13.55□□□□□ -0.24
USHBP1-202ENST00000324554 TMPRSS5Q9H3S3 457 aa13.55□□□□□ -0.24
USHBP1-202ENST00000324554 TRAV1-1A0A0B4J248 108 aa13.55□□□□□ -0.24
USHBP1-202ENST00000324554 IGHV3-64DA0A0J9YX35 117 aa13.55□□□□□ -0.24
USHBP1-202ENST00000324554 CNOT4O95628 575 aaKnown RBP13.55□□□□□ -0.24
USHBP1-202ENST00000324554 METTL15P1P0C7V9 234 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms