RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 HSMCR30P0CW71 290 aa8.37□□□□□ -1.07
LIG3-212ENST00000590181 VSIG8P0DPA2 414 aa8.37□□□□□ -1.07
LIG3-212ENST00000590181 TMEM11P17152 192 aa8.37□□□□□ -1.07
LIG3-212ENST00000590181 CHATP28329 748 aa8.37□□□□□ -1.07
LIG3-212ENST00000590181 CD83Q01151 205 aa8.37□□□□□ -1.07
LIG3-212ENST00000590181 FAM71F2Q6NXP2 309 aa8.37□□□□□ -1.07
LIG3-212ENST00000590181 IZUMO2Q6UXV1 221 aa8.37□□□□□ -1.07
LIG3-212ENST00000590181 TMEM104Q8NE00 496 aa8.37□□□□□ -1.07
LIG3-212ENST00000590181 OR5AU1Q8NGC0 362 aa8.37□□□□□ -1.07
LIG3-212ENST00000590181 FCGR1BQ92637 280 aa8.37□□□□□ -1.07
LIG3-212ENST00000590181 ST6GALNAC6Q969X2 333 aa8.37□□□□□ -1.07
LIG3-212ENST00000590181 ORAI1Q96D31 301 aa8.37□□□□□ -1.07
LIG3-212ENST00000590181 CCDC90BQ9GZT6 254 aa8.37□□□□□ -1.07
LIG3-212ENST00000590181 BANF2Q9H503 90 aa8.37□□□□□ -1.07
LIG3-212ENST00000590181 PLGRKTQ9HBL7 147 aa8.37□□□□□ -1.07
LIG3-212ENST00000590181 TAF9BQ9HBM6 251 aa8.37□□□□□ -1.07
LIG3-212ENST00000590181 OR2S2Q9NQN1 319 aa8.37□□□□□ -1.07
LIG3-212ENST00000590181 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.37□□□□□ -1.07
LIG3-212ENST00000590181 ZFP57Q9NU63 452 aa8.37□□□□□ -1.07
LIG3-212ENST00000590181 PLEKHJ1Q9NW61 149 aa8.37□□□□□ -1.07
LIG3-212ENST00000590181 ZNF580Q9UK33 172 aa8.37□□□□□ -1.07
LIG3-212ENST00000590181 TSSC4Q9Y5U2 329 aaPredicted RBP8.37□□□□□ -1.07
LIG3-212ENST00000590181 DENRO43583 198 aaKnown RBP8.36□□□□□ -1.07
LIG3-212ENST00000590181 TMEM127O75204 238 aa8.36□□□□□ -1.07
LIG3-212ENST00000590181 DUS4LO95620 317 aaKnown RBP8.36□□□□□ -1.07
LIG3-212ENST00000590181 MPIG6BO95866 241 aa8.36□□□□□ -1.07
LIG3-212ENST00000590181 MOSP00540 346 aa8.36□□□□□ -1.07
LIG3-212ENST00000590181 SNRNP70P08621 437 aaKnown RBP8.36□□□□□ -1.07
LIG3-212ENST00000590181 PAX6P26367 422 aa8.36□□□□□ -1.07
LIG3-212ENST00000590181 GP2P55259 537 aaKnown RBP8.36□□□□□ -1.07
LIG3-212ENST00000590181 SLC35B1P78383 322 aa8.36□□□□□ -1.07
LIG3-212ENST00000590181 HES1Q14469 280 aa8.36□□□□□ -1.07
LIG3-212ENST00000590181 P2RY14Q15391 338 aa8.36□□□□□ -1.07
LIG3-212ENST00000590181 ABCA11PQ4W5N1 156 aa8.36□□□□□ -1.07
LIG3-212ENST00000590181 MORN2Q502X0 79 aa8.36□□□□□ -1.07
LIG3-212ENST00000590181 SIGIRRQ6IA17 410 aa8.36□□□□□ -1.07
LIG3-212ENST00000590181 CD200R1LQ6Q8B3 271 aa8.36□□□□□ -1.07
LIG3-212ENST00000590181 FOXRED2Q8IWF2 684 aa8.36□□□□□ -1.07
LIG3-212ENST00000590181 DRAM1Q8N682 238 aa8.36□□□□□ -1.07
LIG3-212ENST00000590181 OR56B1Q8NGI3 324 aa8.36□□□□□ -1.07
LIG3-212ENST00000590181 CCDC107Q8WV48 283 aa8.36□□□□□ -1.07
LIG3-212ENST00000590181 RTN4IP1Q8WWV3 396 aaPredicted RBP8.36□□□□□ -1.07
LIG3-212ENST00000590181 PTX4Q96A99 478 aa8.36□□□□□ -1.07
LIG3-212ENST00000590181 GPR61Q9BZJ8 451 aa8.36□□□□□ -1.07
LIG3-212ENST00000590181 LIN7CQ9NUP9 197 aaKnown RBP8.36□□□□□ -1.07
LIG3-212ENST00000590181 PIPOXQ9P0Z9 390 aa8.36□□□□□ -1.07
LIG3-212ENST00000590181 ZMAT5Q9UDW3 170 aaKnown RBP8.36□□□□□ -1.07
LIG3-212ENST00000590181 SIGLEC9Q9Y336 463 aa8.36□□□□□ -1.07
LIG3-212ENST00000590181 V9GY05 133 aa8.36□□□□□ -1.07
LIG3-212ENST00000590181 TRDV1A0A1B0GX56 115 aa8.35□□□□□ -1.07
LIG3-212ENST00000590181 A0A1W2PP11 408 aa8.35□□□□□ -1.07
LIG3-212ENST00000590181 RRP9O43818 475 aaKnown RBP8.35□□□□□ -1.07
LIG3-212ENST00000590181 NAPSAO96009 420 aa8.35□□□□□ -1.07
LIG3-212ENST00000590181 IGHG2P01859 326 aa8.35□□□□□ -1.07
LIG3-212ENST00000590181 AMY1AP04745 511 aa8.35□□□□□ -1.07
LIG3-212ENST00000590181 AMY2AP04746 511 aa8.35□□□□□ -1.07
LIG3-212ENST00000590181 OR5H8P0DN80 308 aa8.35□□□□□ -1.07
LIG3-212ENST00000590181 BLVRBP30043 206 aaPredicted RBP8.35□□□□□ -1.07
LIG3-212ENST00000590181 MC5RP33032 325 aa8.35□□□□□ -1.07
LIG3-212ENST00000590181 GNG10P50151 68 aa8.35□□□□□ -1.07
LIG3-212ENST00000590181 MRPS15P82914 257 aaKnown RBP8.35□□□□□ -1.07
LIG3-212ENST00000590181 QRFPP83859 136 aa8.35□□□□□ -1.07
LIG3-212ENST00000590181 RAB11BQ15907 218 aa8.35□□□□□ -1.07
LIG3-212ENST00000590181 BAIAP2L2Q6UXY1 529 aa8.35□□□□□ -1.07
LIG3-212ENST00000590181 TMEM91Q6ZNR0 172 aa8.35□□□□□ -1.07
LIG3-212ENST00000590181 MOB3BQ86TA1 216 aa8.35□□□□□ -1.07
LIG3-212ENST00000590181 TPRA1Q86W33 373 aa8.35□□□□□ -1.07
LIG3-212ENST00000590181 C5orf56Q8N8D9 126 aa8.35□□□□□ -1.07
LIG3-212ENST00000590181 ZNF439Q8NDP4 499 aa8.35□□□□□ -1.07
LIG3-212ENST00000590181 WFDC9Q8NEX5 89 aa8.35□□□□□ -1.07
LIG3-212ENST00000590181 OR4K15Q8NH41 348 aa8.35□□□□□ -1.07
LIG3-212ENST00000590181 OR56B4Q8NH76 319 aa8.35□□□□□ -1.07
LIG3-212ENST00000590181 EDARADDQ8WWZ3 215 aa8.35□□□□□ -1.07
LIG3-212ENST00000590181 TMEM203Q969S6 136 aa8.35□□□□□ -1.07
LIG3-212ENST00000590181 RNF5Q99942 180 aa8.35□□□□□ -1.07
LIG3-212ENST00000590181 NDUFB11Q9NX14 153 aa8.35□□□□□ -1.07
LIG3-212ENST00000590181 RAB22AQ9UL26 194 aa8.35□□□□□ -1.07
LIG3-212ENST00000590181 UBE2QL1A1L167 161 aa8.34□□□□□ -1.07
LIG3-212ENST00000590181 FAM172BPA6NC97 362 aa8.34□□□□□ -1.07
LIG3-212ENST00000590181 METTL21EPA6NDL7 271 aa8.34□□□□□ -1.07
LIG3-212ENST00000590181 AP4M1O00189 453 aa8.34□□□□□ -1.07
LIG3-212ENST00000590181 RAB29O14966 203 aa8.34□□□□□ -1.07
LIG3-212ENST00000590181 SCGNO76038 276 aa8.34□□□□□ -1.07
LIG3-212ENST00000590181 ATP6V1G2O95670 118 aa8.34□□□□□ -1.07
LIG3-212ENST00000590181 IGKV1D-33P01593 117 aa8.34□□□□□ -1.07
LIG3-212ENST00000590181 IGKV1-33P01594 117 aa8.34□□□□□ -1.07
LIG3-212ENST00000590181 RCC1P18754 421 aaPredicted RBP8.34□□□□□ -1.07
LIG3-212ENST00000590181 GADD45AP24522 165 aa8.34□□□□□ -1.07
LIG3-212ENST00000590181 MYL9P24844 172 aa8.34□□□□□ -1.07
LIG3-212ENST00000590181 CALRP27797 417 aaKnown RBP8.34□□□□□ -1.07
LIG3-212ENST00000590181 FGF9P31371 208 aaPredicted RBP8.34□□□□□ -1.07
LIG3-212ENST00000590181 SERPINB10P48595 397 aa8.34□□□□□ -1.07
LIG3-212ENST00000590181 HMGN3Q15651 99 aa8.34□□□□□ -1.07
LIG3-212ENST00000590181 SRSF7Q16629 238 aaKnown RBP eCLIP8.34□□□□□ -1.07
LIG3-212ENST00000590181 LTC4SQ16873 150 aa8.34□□□□□ -1.07
LIG3-212ENST00000590181 CT45A1Q5HYN5 189 aa8.34□□□□□ -1.07
LIG3-212ENST00000590181 ZNF880Q6PDB4 577 aa8.34□□□□□ -1.07
LIG3-212ENST00000590181 Q8N6K4 173 aa8.34□□□□□ -1.07
LIG3-212ENST00000590181 OR2AK2Q8NG84 335 aa8.34□□□□□ -1.07
LIG3-212ENST00000590181 OR51D1Q8NGF3 324 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms