RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 PLEKHJ1Q9NW61 149 aa16.1■□□□□ 0.17
SS18-218ENST00000581021 KCNK7Q9Y2U2 307 aa16.1■□□□□ 0.17
SS18-218ENST00000581021 VWFP04275 2813 aa16.1■□□□□ 0.17
SS18-218ENST00000581021 CLEC2LP0C7M8 214 aa16.09■□□□□ 0.17
SS18-218ENST00000581021 CD36P16671 472 aa16.09■□□□□ 0.17
SS18-218ENST00000581021 REG1BP48304 166 aa16.09■□□□□ 0.17
SS18-218ENST00000581021 CT45A1Q5HYN5 189 aa16.09■□□□□ 0.17
SS18-218ENST00000581021 TRAT1Q6PIZ9 186 aa16.09■□□□□ 0.17
SS18-218ENST00000581021 DRAM1Q8N682 238 aa16.09■□□□□ 0.17
SS18-218ENST00000581021 TSPAN14Q8NG11 270 aa16.09■□□□□ 0.17
SS18-218ENST00000581021 CT45A3Q8NHU0 189 aa16.09■□□□□ 0.17
SS18-218ENST00000581021 ST6GALNAC6Q969X2 333 aa16.09■□□□□ 0.17
SS18-218ENST00000581021 RBMXL1Q96E39 390 aaKnown RBP16.09■□□□□ 0.17
SS18-218ENST00000581021 CENPOQ9BU64 300 aa16.09■□□□□ 0.17
SS18-218ENST00000581021 PECRQ9BY49 303 aa16.09■□□□□ 0.17
SS18-218ENST00000581021 GNG12Q9UBI6 72 aa16.09■□□□□ 0.17
SS18-218ENST00000581021 PITPNC1Q9UKF7 332 aa16.09■□□□□ 0.17
SS18-218ENST00000581021 HSF4Q9ULV5 492 aa16.09■□□□□ 0.17
SS18-218ENST00000581021 SSR3Q9UNL2 185 aa16.09■□□□□ 0.17
SS18-218ENST00000581021 FAM90A9PA6NNJ1 464 aa16.08■□□□□ 0.16
SS18-218ENST00000581021 HSD17B6O14756 317 aa16.08■□□□□ 0.16
SS18-218ENST00000581021 TNFAIP8O95379 198 aa16.08■□□□□ 0.16
SS18-218ENST00000581021 AMY1AP04745 511 aa16.08■□□□□ 0.16
SS18-218ENST00000581021 AMY2AP04746 511 aa16.08■□□□□ 0.16
SS18-218ENST00000581021 BRS3P32247 399 aa16.08■□□□□ 0.16
SS18-218ENST00000581021 SDC2P34741 201 aa16.08■□□□□ 0.16
SS18-218ENST00000581021 PPP1CCP36873 323 aaKnown RBP16.08■□□□□ 0.16
SS18-218ENST00000581021 TMEM95Q3KNT9 176 aa16.08■□□□□ 0.16
SS18-218ENST00000581021 CCDC144NLQ6NUI1 221 aa16.08■□□□□ 0.16
SS18-218ENST00000581021 SLC25A48Q6ZT89 311 aaKnown RBP16.08■□□□□ 0.16
SS18-218ENST00000581021 ZNF554Q86TJ5 538 aa16.08■□□□□ 0.16
SS18-218ENST00000581021 OCSTAMPQ9BR26 566 aa16.08■□□□□ 0.16
SS18-218ENST00000581021 ZNF696Q9H7X3 374 aa16.08■□□□□ 0.16
SS18-218ENST00000581021 SERTAD4Q9NUC0 356 aa16.08■□□□□ 0.16
SS18-218ENST00000581021 RAB22AQ9UL26 194 aa16.08■□□□□ 0.16
SS18-218ENST00000581021 TRBV6-6A0A0A6YYG2 114 aa16.07■□□□□ 0.16
SS18-218ENST00000581021 LOC100506127A0A0U1RQW1 187 aa16.07■□□□□ 0.16
SS18-218ENST00000581021 TRIM64CA6NLI5 447 aa16.07■□□□□ 0.16
SS18-218ENST00000581021 NOTOA8MTQ0 251 aa16.07■□□□□ 0.16
SS18-218ENST00000581021 TGFBR1P36897 503 aa16.07■□□□□ 0.16
SS18-218ENST00000581021 TMEM30BQ3MIR4 351 aa16.07■□□□□ 0.16
SS18-218ENST00000581021 Q3ZCU0 254 aa16.07■□□□□ 0.16
SS18-218ENST00000581021 PARP12Q9H0J9 701 aaKnown RBP16.07■□□□□ 0.16
SS18-218ENST00000581021 OR2S2Q9NQN1 319 aa16.07■□□□□ 0.16
SS18-218ENST00000581021 KCNIP1Q9NZI2 227 aa16.07■□□□□ 0.16
SS18-218ENST00000581021 SH2D7A6NKC9 451 aaPredicted RBP16.06■□□□□ 0.16
SS18-218ENST00000581021 RAB27BO00194 218 aa16.06■□□□□ 0.16
SS18-218ENST00000581021 RRP9O43818 475 aaKnown RBP16.06■□□□□ 0.16
SS18-218ENST00000581021 SNRNP70P08621 437 aaKnown RBP16.06■□□□□ 0.16
SS18-218ENST00000581021 RAB6AP20340 208 aa16.06■□□□□ 0.16
SS18-218ENST00000581021 MNDAP41218 407 aa16.06■□□□□ 0.16
SS18-218ENST00000581021 RAB7AP51149 207 aa16.06■□□□□ 0.16
SS18-218ENST00000581021 ZNF137PP52743 207 aa16.06■□□□□ 0.16
SS18-218ENST00000581021 ZNF816Q0VGE8 651 aaPredicted RBP16.06■□□□□ 0.16
SS18-218ENST00000581021 MORN2Q502X0 79 aa16.06■□□□□ 0.16
SS18-218ENST00000581021 Q6ZTK2 550 aa16.06■□□□□ 0.16
SS18-218ENST00000581021 OR56B1Q8NGI3 324 aa16.06■□□□□ 0.16
SS18-218ENST00000581021 OR2T6Q8NHC8 308 aa16.06■□□□□ 0.16
SS18-218ENST00000581021 CAPSLQ8WWF8 208 aa16.06■□□□□ 0.16
SS18-218ENST00000581021 YIPF6Q96EC8 236 aa16.06■□□□□ 0.16
SS18-218ENST00000581021 KCTD7Q96MP8 289 aa16.06■□□□□ 0.16
SS18-218ENST00000581021 RBM14Q96PK6 669 aaKnown RBP16.06■□□□□ 0.16
SS18-218ENST00000581021 SLC25A33Q9BSK2 321 aa16.06■□□□□ 0.16
SS18-218ENST00000581021 CHMP1AQ9HD42 196 aaPredicted RBP16.06■□□□□ 0.16
SS18-218ENST00000581021 JPT1Q9UK76 154 aa16.06■□□□□ 0.16
SS18-218ENST00000581021 CMYA5Q8N3K9 4069 aa16.06■□□□□ 0.16
SS18-218ENST00000581021 A0A087WXM4 84 aa16.05■□□□□ 0.16
SS18-218ENST00000581021 IGHV3-72A0A0B4J1Y9 119 aa16.05■□□□□ 0.16
SS18-218ENST00000581021 IGHV1-3A0A0C4DH29 117 aa16.05■□□□□ 0.16
SS18-218ENST00000581021 MFNGO00587 321 aa16.05■□□□□ 0.16
SS18-218ENST00000581021 OR2F2O95006 317 aa16.05■□□□□ 0.16
SS18-218ENST00000581021 ARHGDIBP52566 201 aa16.05■□□□□ 0.16
SS18-218ENST00000581021 HTD2P86397 168 aa16.05■□□□□ 0.16
SS18-218ENST00000581021 MXD1Q05195 221 aa16.05■□□□□ 0.16
SS18-218ENST00000581021 PRR31Q5SQ13 230 aa16.05■□□□□ 0.16
SS18-218ENST00000581021 SFXN4Q6P4A7 337 aa16.05■□□□□ 0.16
SS18-218ENST00000581021 TPRA1Q86W33 373 aa16.05■□□□□ 0.16
SS18-218ENST00000581021 ODF3L1Q8IXM7 274 aa16.05■□□□□ 0.16
SS18-218ENST00000581021 OR8H3Q8N146 312 aa16.05■□□□□ 0.16
SS18-218ENST00000581021 KLHDC1Q8N7A1 406 aa16.05■□□□□ 0.16
SS18-218ENST00000581021 SGMS2Q8NHU3 365 aa16.05■□□□□ 0.16
SS18-218ENST00000581021 SETD6Q8TBK2 473 aa16.05■□□□□ 0.16
SS18-218ENST00000581021 RTN4IP1Q8WWV3 396 aaPredicted RBP16.05■□□□□ 0.16
SS18-218ENST00000581021 RAB9BQ9NP90 201 aa16.05■□□□□ 0.16
SS18-218ENST00000581021 C12orf4Q9NQ89 552 aa16.05■□□□□ 0.16
SS18-218ENST00000581021 DAPK2Q9UIK4 370 aa16.05■□□□□ 0.16
SS18-218ENST00000581021 ZNF736B4DX44 427 aaPredicted RBP16.04■□□□□ 0.16
SS18-218ENST00000581021 SNRPBP14678 240 aaKnown RBP16.04■□□□□ 0.16
SS18-218ENST00000581021 MOB1BQ7L9L4 216 aa16.04■□□□□ 0.16
SS18-218ENST00000581021 OR10R2Q8NGX6 335 aa16.04■□□□□ 0.16
SS18-218ENST00000581021 WIPF2Q8TF74 440 aaPredicted RBP16.04■□□□□ 0.16
SS18-218ENST00000581021 RAB3CQ96E17 227 aa16.04■□□□□ 0.16
SS18-218ENST00000581021 Q9N2K0 584 aa16.04■□□□□ 0.16
SS18-218ENST00000581021 IGKV1-6A0A0C4DH72 117 aa16.03■□□□□ 0.16
SS18-218ENST00000581021 IGKV1D-33P01593 117 aa16.03■□□□□ 0.16
SS18-218ENST00000581021 IGKV1-33P01594 117 aa16.03■□□□□ 0.16
SS18-218ENST00000581021 SMIM18P0DKX4 95 aa16.03■□□□□ 0.16
SS18-218ENST00000581021 GNB3P16520 340 aa16.03■□□□□ 0.16
SS18-218ENST00000581021 HLA-DRB3P79483 266 aa16.03■□□□□ 0.16
SS18-218ENST00000581021 C16orf82Q7Z2V1 217 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms