RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 IFITM5A6NNB3 132 aa10.73□□□□□ -0.69
CLK3-213ENST00000563842 FAM90A9PA6NNJ1 464 aa10.73□□□□□ -0.69
CLK3-213ENST00000563842 HSD17B6O14756 317 aa10.73□□□□□ -0.69
CLK3-213ENST00000563842 SOCS1O15524 211 aa10.73□□□□□ -0.69
CLK3-213ENST00000563842 TXNL1O43396 289 aa10.73□□□□□ -0.69
CLK3-213ENST00000563842 VEGFCP49767 419 aa10.73□□□□□ -0.69
CLK3-213ENST00000563842 CLDN12P56749 244 aa10.73□□□□□ -0.69
CLK3-213ENST00000563842 HERPUD1Q15011 391 aa10.73□□□□□ -0.69
CLK3-213ENST00000563842 SLC25A48Q6ZT89 311 aaKnown RBP10.73□□□□□ -0.69
CLK3-213ENST00000563842 TPRA1Q86W33 373 aa10.73□□□□□ -0.69
CLK3-213ENST00000563842 OR1L1Q8NH94 360 aa10.73□□□□□ -0.69
CLK3-213ENST00000563842 ZNF702PQ9H963 129 aa10.73□□□□□ -0.69
CLK3-213ENST00000563842 VCX3AQ9NNX9 186 aa10.73□□□□□ -0.69
CLK3-213ENST00000563842 TXNL4BQ9NX01 149 aaKnown RBP10.73□□□□□ -0.69
CLK3-213ENST00000563842 SIGLEC9Q9Y336 463 aa10.73□□□□□ -0.69
CLK3-213ENST00000563842 TRBV6-6A0A0A6YYG2 114 aa10.72□□□□□ -0.69
CLK3-213ENST00000563842 A0A1W2PPE3 182 aa10.72□□□□□ -0.69
CLK3-213ENST00000563842 A0A1W2PPI3 338 aa10.72□□□□□ -0.69
CLK3-213ENST00000563842 METTL21EPA6NDL7 271 aa10.72□□□□□ -0.69
CLK3-213ENST00000563842 YPEL1O60688 119 aa10.72□□□□□ -0.69
CLK3-213ENST00000563842 NAPSAO96009 420 aa10.72□□□□□ -0.69
CLK3-213ENST00000563842 RAB6AP20340 208 aa10.72□□□□□ -0.69
CLK3-213ENST00000563842 GADD45AP24522 165 aa10.72□□□□□ -0.69
CLK3-213ENST00000563842 CD24P25063 80 aa10.72□□□□□ -0.69
CLK3-213ENST00000563842 KRTAP10-3P60369 221 aa10.72□□□□□ -0.69
CLK3-213ENST00000563842 MRPS15P82914 257 aaKnown RBP10.72□□□□□ -0.69
CLK3-213ENST00000563842 SRSF4Q08170 494 aaKnown RBP10.72□□□□□ -0.69
CLK3-213ENST00000563842 HES1Q14469 280 aa10.72□□□□□ -0.69
CLK3-213ENST00000563842 MORN2Q502X0 79 aa10.72□□□□□ -0.69
CLK3-213ENST00000563842 LY6G6FQ5SQ64 297 aa10.72□□□□□ -0.69
CLK3-213ENST00000563842 DRAM1Q8N682 238 aa10.72□□□□□ -0.69
CLK3-213ENST00000563842 KLHDC1Q8N7A1 406 aa10.72□□□□□ -0.69
CLK3-213ENST00000563842 OR56B4Q8NH76 319 aa10.72□□□□□ -0.69
CLK3-213ENST00000563842 SETD6Q8TBK2 473 aa10.72□□□□□ -0.69
CLK3-213ENST00000563842 YPEL2Q96QA6 119 aa10.72□□□□□ -0.69
CLK3-213ENST00000563842 A0A0A6YYD4 124 aa10.71□□□□□ -0.69
CLK3-213ENST00000563842 IGHV1-3A0A0C4DH29 117 aa10.71□□□□□ -0.69
CLK3-213ENST00000563842 TMEM272A0A1B0GTI8 110 aa10.71□□□□□ -0.69
CLK3-213ENST00000563842 NOTOA8MTQ0 251 aa10.71□□□□□ -0.69
CLK3-213ENST00000563842 LDLRAD4O15165 306 aa10.71□□□□□ -0.69
CLK3-213ENST00000563842 TNFAIP8O95379 198 aa10.71□□□□□ -0.69
CLK3-213ENST00000563842 SNRNP70P08621 437 aaKnown RBP10.71□□□□□ -0.69
CLK3-213ENST00000563842 VSIG10L2P0DP72 767 aa10.71□□□□□ -0.69
CLK3-213ENST00000563842 TMEM11P17152 192 aa10.71□□□□□ -0.69
CLK3-213ENST00000563842 VDAC2P45880 294 aaPredicted RBP10.71□□□□□ -0.69
CLK3-213ENST00000563842 ZNF137PP52743 207 aa10.71□□□□□ -0.69
CLK3-213ENST00000563842 OR10A3P58181 314 aa10.71□□□□□ -0.69
CLK3-213ENST00000563842 BLCAPP62952 87 aa10.71□□□□□ -0.69
CLK3-213ENST00000563842 ARL6IP1Q15041 203 aa10.71□□□□□ -0.69
CLK3-213ENST00000563842 HMGN3Q15651 99 aa10.71□□□□□ -0.69
CLK3-213ENST00000563842 NEDD8Q15843 81 aa10.71□□□□□ -0.69
CLK3-213ENST00000563842 ZNF880Q6PDB4 577 aa10.71□□□□□ -0.69
CLK3-213ENST00000563842 MOB3BQ86TA1 216 aa10.71□□□□□ -0.69
CLK3-213ENST00000563842 OR10V1Q8NGI7 309 aa10.71□□□□□ -0.69
CLK3-213ENST00000563842 RTN4IP1Q8WWV3 396 aaPredicted RBP10.71□□□□□ -0.69
CLK3-213ENST00000563842 CFHR4Q92496 578 aa10.71□□□□□ -0.69
CLK3-213ENST00000563842 PTX4Q96A99 478 aa10.71□□□□□ -0.69
CLK3-213ENST00000563842 KCTD7Q96MP8 289 aa10.71□□□□□ -0.69
CLK3-213ENST00000563842 CMSS1Q9BQ75 279 aaKnown RBP10.71□□□□□ -0.69
CLK3-213ENST00000563842 PECRQ9BY49 303 aa10.71□□□□□ -0.69
CLK3-213ENST00000563842 C12orf4Q9NQ89 552 aa10.71□□□□□ -0.69
CLK3-213ENST00000563842 SERTAD4Q9NUC0 356 aa10.71□□□□□ -0.69
CLK3-213ENST00000563842 AK3Q9UIJ7 227 aa10.71□□□□□ -0.69
CLK3-213ENST00000563842 MOB4Q9Y3A3 225 aa10.71□□□□□ -0.69
CLK3-213ENST00000563842 MGAM2Q2M2H8 2515 aa10.71□□□□□ -0.7
CLK3-213ENST00000563842 A0A087WXM4 84 aa10.7□□□□□ -0.7
CLK3-213ENST00000563842 SHISA3A0PJX4 238 aa10.7□□□□□ -0.7
CLK3-213ENST00000563842 FOXI3A8MTJ6 420 aaPredicted RBP10.7□□□□□ -0.7
CLK3-213ENST00000563842 CD1BP29016 333 aa10.7□□□□□ -0.7
CLK3-213ENST00000563842 TMEM50BP56557 158 aa10.7□□□□□ -0.7
CLK3-213ENST00000563842 DIAPH2-AS1Q14236 149 aa10.7□□□□□ -0.7
CLK3-213ENST00000563842 HABP2Q14520 560 aaPredicted RBP10.7□□□□□ -0.7
CLK3-213ENST00000563842 C2orf68Q2NKX9 166 aa10.7□□□□□ -0.7
CLK3-213ENST00000563842 TIMM50Q3ZCQ8 353 aa10.7□□□□□ -0.7
CLK3-213ENST00000563842 CT45A1Q5HYN5 189 aa10.7□□□□□ -0.7
CLK3-213ENST00000563842 TREML4Q6UXN2 200 aa10.7□□□□□ -0.7
CLK3-213ENST00000563842 TGIF2LXQ8IUE1 241 aa10.7□□□□□ -0.7
CLK3-213ENST00000563842 ZNF439Q8NDP4 499 aa10.7□□□□□ -0.7
CLK3-213ENST00000563842 OR52L2PQ8NGH6 319 aa10.7□□□□□ -0.7
CLK3-213ENST00000563842 OR2T10Q8NGZ9 312 aa10.7□□□□□ -0.7
CLK3-213ENST00000563842 CT45A3Q8NHU0 189 aa10.7□□□□□ -0.7
CLK3-213ENST00000563842 IL1F10Q8WWZ1 152 aa10.7□□□□□ -0.7
CLK3-213ENST00000563842 ST6GALNAC6Q969X2 333 aa10.7□□□□□ -0.7
CLK3-213ENST00000563842 RAB3CQ96E17 227 aa10.7□□□□□ -0.7
CLK3-213ENST00000563842 ARHGAP5-AS1Q96IT6 56 aa10.7□□□□□ -0.7
CLK3-213ENST00000563842 ABHD14AQ9BUJ0 271 aa10.7□□□□□ -0.7
CLK3-213ENST00000563842 FGF16O43320 207 aa10.69□□□□□ -0.7
CLK3-213ENST00000563842 LANCL1O43813 399 aa10.69□□□□□ -0.7
CLK3-213ENST00000563842 IGKV1D-33P01593 117 aa10.69□□□□□ -0.7
CLK3-213ENST00000563842 IGKV1-33P01594 117 aa10.69□□□□□ -0.7
CLK3-213ENST00000563842 CD3GP09693 182 aa10.69□□□□□ -0.7
CLK3-213ENST00000563842 CD36P16671 472 aa10.69□□□□□ -0.7
CLK3-213ENST00000563842 PPP1CCP36873 323 aaKnown RBP10.69□□□□□ -0.7
CLK3-213ENST00000563842 REG1BP48304 166 aa10.69□□□□□ -0.7
CLK3-213ENST00000563842 ZNF134P52741 427 aa10.69□□□□□ -0.7
CLK3-213ENST00000563842 EBI3Q14213 229 aa10.69□□□□□ -0.7
CLK3-213ENST00000563842 ABCA11PQ4W5N1 156 aa10.69□□□□□ -0.7
CLK3-213ENST00000563842 IZUMO1Q8IYV9 350 aa10.69□□□□□ -0.7
CLK3-213ENST00000563842 LYG1Q8N1E2 194 aa10.69□□□□□ -0.7
CLK3-213ENST00000563842 TSPAN14Q8NG11 270 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms