RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 PSMD7P51665 324 aa12.75□□□□□ -0.37
CCDC88C-209ENST00000554872 FABP5Q01469 135 aa12.75□□□□□ -0.37
CCDC88C-209ENST00000554872 DEFA6Q01524 100 aa12.75□□□□□ -0.37
CCDC88C-209ENST00000554872 HMGN3Q15651 99 aa12.75□□□□□ -0.37
CCDC88C-209ENST00000554872 ZNF880Q6PDB4 577 aa12.75□□□□□ -0.37
CCDC88C-209ENST00000554872 MOB1BQ7L9L4 216 aa12.75□□□□□ -0.37
CCDC88C-209ENST00000554872 C11orf44Q8N8P7 122 aa12.75□□□□□ -0.37
CCDC88C-209ENST00000554872 OR4F17Q8NGA8 305 aa12.75□□□□□ -0.37
CCDC88C-209ENST00000554872 OR1L1Q8NH94 360 aa12.75□□□□□ -0.37
CCDC88C-209ENST00000554872 FAM110DQ8TAY7 271 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-209ENST00000554872 OR4F4Q96R69 305 aa12.75□□□□□ -0.37
CCDC88C-209ENST00000554872 CITED2Q99967 270 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-209ENST00000554872 SULT4A1Q9BR01 284 aa12.75□□□□□ -0.37
CCDC88C-209ENST00000554872 CCDC90BQ9GZT6 254 aa12.75□□□□□ -0.37
CCDC88C-209ENST00000554872 KCNIP1Q9NZI2 227 aa12.75□□□□□ -0.37
CCDC88C-209ENST00000554872 UBE2QL1A1L167 161 aa12.74□□□□□ -0.37
CCDC88C-209ENST00000554872 FOXI3A8MTJ6 420 aaPredicted RBP12.74□□□□□ -0.37
CCDC88C-209ENST00000554872 KCNAB3O43448 404 aa12.74□□□□□ -0.37
CCDC88C-209ENST00000554872 LANCL1O43813 399 aa12.74□□□□□ -0.37
CCDC88C-209ENST00000554872 YPEL1O60688 119 aa12.74□□□□□ -0.37
CCDC88C-209ENST00000554872 IGKV1D-33P01593 117 aa12.74□□□□□ -0.37
CCDC88C-209ENST00000554872 IGKV1-33P01594 117 aa12.74□□□□□ -0.37
CCDC88C-209ENST00000554872 CT45A1Q5HYN5 189 aa12.74□□□□□ -0.37
CCDC88C-209ENST00000554872 KPRPQ5T749 579 aaPredicted RBP12.74□□□□□ -0.37
CCDC88C-209ENST00000554872 OR10K2Q6IF99 312 aa12.74□□□□□ -0.37
CCDC88C-209ENST00000554872 TGIF2LXQ8IUE1 241 aa12.74□□□□□ -0.37
CCDC88C-209ENST00000554872 SVOPQ8N4V2 548 aa12.74□□□□□ -0.37
CCDC88C-209ENST00000554872 OR5AU1Q8NGC0 362 aa12.74□□□□□ -0.37
CCDC88C-209ENST00000554872 OR8H1Q8NGG4 311 aa12.74□□□□□ -0.37
CCDC88C-209ENST00000554872 CT45A3Q8NHU0 189 aa12.74□□□□□ -0.37
CCDC88C-209ENST00000554872 YPEL2Q96QA6 119 aa12.74□□□□□ -0.37
CCDC88C-209ENST00000554872 URM1Q9BTM9 101 aaKnown RBP12.74□□□□□ -0.37
CCDC88C-209ENST00000554872 LPAR5Q9H1C0 372 aa12.74□□□□□ -0.37
CCDC88C-209ENST00000554872 RIMS4Q9H426 269 aaPredicted RBP12.74□□□□□ -0.37
CCDC88C-209ENST00000554872 NDUFB11Q9NX14 153 aa12.74□□□□□ -0.37
CCDC88C-209ENST00000554872 HSF4Q9ULV5 492 aa12.74□□□□□ -0.37
CCDC88C-209ENST00000554872 IGHV3-43A0A0B4J1X8 118 aa12.73□□□□□ -0.37
CCDC88C-209ENST00000554872 TRAV1-2A0A0B4J238 106 aa12.73□□□□□ -0.37
CCDC88C-209ENST00000554872 A0A1W2PPE3 182 aa12.73□□□□□ -0.37
CCDC88C-209ENST00000554872 SLC31A2O15432 143 aa12.73□□□□□ -0.37
CCDC88C-209ENST00000554872 IGHV3-43DP0DP04 118 aa12.73□□□□□ -0.37
CCDC88C-209ENST00000554872 ARSBP15848 533 aa12.73□□□□□ -0.37
CCDC88C-209ENST00000554872 MAP2K4P45985 399 aa12.73□□□□□ -0.37
CCDC88C-209ENST00000554872 ZNF134P52741 427 aa12.73□□□□□ -0.37
CCDC88C-209ENST00000554872 SSX1Q16384 188 aa12.73□□□□□ -0.37
CCDC88C-209ENST00000554872 MORN2Q502X0 79 aa12.73□□□□□ -0.37
CCDC88C-209ENST00000554872 PDLIM3Q53GG5 364 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-209ENST00000554872 TCTEX1D4Q5JR98 221 aa12.73□□□□□ -0.37
CCDC88C-209ENST00000554872 OR2T10Q8NGZ9 312 aa12.73□□□□□ -0.37
CCDC88C-209ENST00000554872 UBALD1Q8TB05 177 aa12.73□□□□□ -0.37
CCDC88C-209ENST00000554872 YTHDF1Q9BYJ9 559 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-209ENST00000554872 PLGRKTQ9HBL7 147 aa12.73□□□□□ -0.37
CCDC88C-209ENST00000554872 OR2S2Q9NQN1 319 aa12.73□□□□□ -0.37
CCDC88C-209ENST00000554872 A0A0A6YYD4 124 aa12.72□□□□□ -0.37
CCDC88C-209ENST00000554872 LDLRAD4O15165 306 aa12.72□□□□□ -0.37
CCDC88C-209ENST00000554872 DENRO43583 198 aaKnown RBP12.72□□□□□ -0.37
CCDC88C-209ENST00000554872 RGS11O94810 467 aa12.72□□□□□ -0.37
CCDC88C-209ENST00000554872 IGHG2P01859 326 aa12.72□□□□□ -0.37
CCDC88C-209ENST00000554872 CALRP27797 417 aaKnown RBP12.72□□□□□ -0.37
CCDC88C-209ENST00000554872 BLVRBP30043 206 aaPredicted RBP12.72□□□□□ -0.37
CCDC88C-209ENST00000554872 HES1Q14469 280 aa12.72□□□□□ -0.37
CCDC88C-209ENST00000554872 RAB11BQ15907 218 aa12.72□□□□□ -0.37
CCDC88C-209ENST00000554872 NKAPLQ5M9Q1 402 aa12.72□□□□□ -0.37
CCDC88C-209ENST00000554872 FAM53AQ6NSI3 398 aaPredicted RBP12.72□□□□□ -0.37
CCDC88C-209ENST00000554872 C6orf201Q7Z4U5 140 aa12.72□□□□□ -0.37
CCDC88C-209ENST00000554872 CENPVQ7Z7K6 275 aaPredicted RBP12.72□□□□□ -0.37
CCDC88C-209ENST00000554872 OR4X2Q8NGF9 303 aa12.72□□□□□ -0.37
CCDC88C-209ENST00000554872 GALMQ96C23 342 aa12.72□□□□□ -0.37
CCDC88C-209ENST00000554872 EAF1Q96JC9 268 aaPredicted RBP12.72□□□□□ -0.37
CCDC88C-209ENST00000554872 NICN1Q9BSH3 213 aa12.72□□□□□ -0.37
CCDC88C-209ENST00000554872 FAAP24Q9BTP7 215 aa12.72□□□□□ -0.37
CCDC88C-209ENST00000554872 ABHD14AQ9BUJ0 271 aa12.72□□□□□ -0.37
CCDC88C-209ENST00000554872 Q9H521 79 aa12.72□□□□□ -0.37
CCDC88C-209ENST00000554872 LIN7CQ9NUP9 197 aaKnown RBP12.72□□□□□ -0.37
CCDC88C-209ENST00000554872 MGAT4AQ9UM21 535 aa12.72□□□□□ -0.37
CCDC88C-209ENST00000554872 TSSC4Q9Y5U2 329 aaPredicted RBP12.72□□□□□ -0.37
CCDC88C-209ENST00000554872 ITGB1BP1O14713 200 aa12.71□□□□□ -0.37
CCDC88C-209ENST00000554872 MOSP00540 346 aa12.71□□□□□ -0.37
CCDC88C-209ENST00000554872 REG1BP48304 166 aa12.71□□□□□ -0.37
CCDC88C-209ENST00000554872 SAMD5Q5TGI4 173 aa12.71□□□□□ -0.37
CCDC88C-209ENST00000554872 UBE2UQ5VVX9 321 aa12.71□□□□□ -0.37
CCDC88C-209ENST00000554872 FAM71F2Q6NXP2 309 aa12.71□□□□□ -0.37
CCDC88C-209ENST00000554872 MOB3BQ86TA1 216 aa12.71□□□□□ -0.37
CCDC88C-209ENST00000554872 PRR18Q8N4B5 295 aa12.71□□□□□ -0.37
CCDC88C-209ENST00000554872 COMMD1Q8N668 190 aa12.71□□□□□ -0.37
CCDC88C-209ENST00000554872 OR10V1Q8NGI7 309 aa12.71□□□□□ -0.37
CCDC88C-209ENST00000554872 CHPT1Q8WUD6 406 aa12.71□□□□□ -0.37
CCDC88C-209ENST00000554872 CYYR1Q96J86 154 aa12.71□□□□□ -0.37
CCDC88C-209ENST00000554872 KCNK15Q9H427 330 aa12.71□□□□□ -0.37
CCDC88C-209ENST00000554872 PLEKHJ1Q9NW61 149 aa12.71□□□□□ -0.37
CCDC88C-209ENST00000554872 ABRACLQ9P1F3 81 aa12.71□□□□□ -0.37
CCDC88C-209ENST00000554872 ZNF580Q9UK33 172 aa12.71□□□□□ -0.37
CCDC88C-209ENST00000554872 AK6Q9Y3D8 172 aaKnown RBP12.71□□□□□ -0.37
CCDC88C-209ENST00000554872 V9GY05 133 aa12.71□□□□□ -0.37
CCDC88C-209ENST00000554872 TRDV1A0A1B0GX56 115 aa12.7□□□□□ -0.38
CCDC88C-209ENST00000554872 LSAMPQ13449 338 aa12.7□□□□□ -0.38
CCDC88C-209ENST00000554872 GNMTQ14749 295 aa12.7□□□□□ -0.38
CCDC88C-209ENST00000554872 NSUN5P1Q3KNT7 163 aa12.7□□□□□ -0.38
CCDC88C-209ENST00000554872 Q6ZPA2 131 aa12.7□□□□□ -0.38
CCDC88C-209ENST00000554872 ODF3L1Q8IXM7 274 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms