RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 KCTD9Q7L273 389 aa8.21□□□□□ -1.1
CLIP1-212ENST00000540304 FAM219AQ8IW50 185 aa8.21□□□□□ -1.1
CLIP1-212ENST00000540304 FAM57AQ8TBR7 257 aa8.21□□□□□ -1.1
CLIP1-212ENST00000540304 KLF14Q8TD94 323 aaPredicted RBP8.21□□□□□ -1.1
CLIP1-212ENST00000540304 HIST1H2BAQ96A08 127 aa8.21□□□□□ -1.1
CLIP1-212ENST00000540304 DIRC2Q96SL1 478 aa8.21□□□□□ -1.1
CLIP1-212ENST00000540304 EGLN1Q9GZT9 426 aa8.21□□□□□ -1.1
CLIP1-212ENST00000540304 MFFQ9GZY8 342 aa8.21□□□□□ -1.1
CLIP1-212ENST00000540304 CSTL1Q9H114 145 aa8.21□□□□□ -1.1
CLIP1-212ENST00000540304 DECR2Q9NUI1 292 aa8.21□□□□□ -1.1
CLIP1-212ENST00000540304 IL36RNQ9UBH0 155 aa8.21□□□□□ -1.1
CLIP1-212ENST00000540304 ADGRG4Q8IZF6 3080 aa8.21□□□□□ -1.1
CLIP1-212ENST00000540304 ZZEF1O43149 2961 aa8.21□□□□□ -1.1
CLIP1-212ENST00000540304 IGF2RP11717 2491 aa8.21□□□□□ -1.1
CLIP1-212ENST00000540304 FXYD6-FXYD2A0A087WZ82 144 aa8.2□□□□□ -1.1
CLIP1-212ENST00000540304 A0A0B4J2A0 478 aa8.2□□□□□ -1.1
CLIP1-212ENST00000540304 IGHV3-64DA0A0J9YX35 117 aa8.2□□□□□ -1.1
CLIP1-212ENST00000540304 TMEM218A2RU14 115 aa8.2□□□□□ -1.1
CLIP1-212ENST00000540304 MCRIP1C9JLW8 97 aa8.2□□□□□ -1.1
CLIP1-212ENST00000540304 HNF4GQ14541 408 aa8.2□□□□□ -1.1
CLIP1-212ENST00000540304 IL13RA2Q14627 380 aa8.2□□□□□ -1.1
CLIP1-212ENST00000540304 SLC9A3R2Q15599 337 aa8.2□□□□□ -1.1
CLIP1-212ENST00000540304 ZNF324BQ6AW86 544 aaPredicted RBP8.2□□□□□ -1.1
CLIP1-212ENST00000540304 DHRS11Q6UWP2 260 aa8.2□□□□□ -1.1
CLIP1-212ENST00000540304 CLEC18BQ6UXF7 455 aa8.2□□□□□ -1.1
CLIP1-212ENST00000540304 RPRMLQ8N4K4 120 aa8.2□□□□□ -1.1
CLIP1-212ENST00000540304 FAM169BQ8N8A8 192 aa8.2□□□□□ -1.1
CLIP1-212ENST00000540304 C14orf79Q96F83 325 aa8.2□□□□□ -1.1
CLIP1-212ENST00000540304 ZNF488Q96MN9 340 aa8.2□□□□□ -1.1
CLIP1-212ENST00000540304 FXYD6Q9H0Q3 95 aa8.2□□□□□ -1.1
CLIP1-212ENST00000540304 SHPKQ9UHJ6 478 aa8.2□□□□□ -1.1
CLIP1-212ENST00000540304 SPTBN4Q9H254 2564 aa8.2□□□□□ -1.1
CLIP1-212ENST00000540304 CADP27708 2225 aa8.2□□□□□ -1.1
CLIP1-212ENST00000540304 SHANK1Q9Y566 2161 aa8.2□□□□□ -1.1
CLIP1-212ENST00000540304 CTSDP07339 412 aaPredicted RBP8.2□□□□□ -1.1
CLIP1-212ENST00000540304 GLRA1P23415 457 aa8.2□□□□□ -1.1
CLIP1-212ENST00000540304 MPV17P39210 176 aa8.2□□□□□ -1.1
CLIP1-212ENST00000540304 SUPT4H1P63272 117 aaKnown RBP8.2□□□□□ -1.1
CLIP1-212ENST00000540304 SRSF7Q16629 238 aaKnown RBP eCLIP8.2□□□□□ -1.1
CLIP1-212ENST00000540304 ALKBH6Q3KRA9 238 aa8.2□□□□□ -1.1
CLIP1-212ENST00000540304 NCR3LG1Q68D85 454 aa8.2□□□□□ -1.1
CLIP1-212ENST00000540304 PRSS57Q6UWY2 283 aa8.2□□□□□ -1.1
CLIP1-212ENST00000540304 Q6ZPA2 131 aa8.2□□□□□ -1.1
CLIP1-212ENST00000540304 Q6ZS49 121 aa8.2□□□□□ -1.1
CLIP1-212ENST00000540304 WDR86Q86TI4 376 aa8.2□□□□□ -1.1
CLIP1-212ENST00000540304 FAM58AQ8N1B3 248 aa8.2□□□□□ -1.1
CLIP1-212ENST00000540304 SFXN3Q9BWM7 321 aa8.2□□□□□ -1.1
CLIP1-212ENST00000540304 GAR1Q9NY12 217 aaKnown RBP8.2□□□□□ -1.1
CLIP1-212ENST00000540304 COMMD9Q9P000 198 aa8.2□□□□□ -1.1
CLIP1-212ENST00000540304 POLDIP2Q9Y2S7 368 aa8.2□□□□□ -1.1
CLIP1-212ENST00000540304 PCNX1Q96RV3 2341 aa8.2□□□□□ -1.1
CLIP1-212ENST00000540304 TRAV14DV4A0A0A6YYC5 116 aa8.19□□□□□ -1.1
CLIP1-212ENST00000540304 IGHV1-18A0A0C4DH31 117 aa8.19□□□□□ -1.1
CLIP1-212ENST00000540304 K7ENP7 123 aa8.19□□□□□ -1.1
CLIP1-212ENST00000540304 RHBDL1O75783 438 aa8.19□□□□□ -1.1
CLIP1-212ENST00000540304 NAPSAO96009 420 aa8.19□□□□□ -1.1
CLIP1-212ENST00000540304 RBMXP38159 391 aaKnown RBP8.19□□□□□ -1.1
CLIP1-212ENST00000540304 SLAQ13239 276 aa8.19□□□□□ -1.1
CLIP1-212ENST00000540304 TBR1Q16650 682 aa8.19□□□□□ -1.1
CLIP1-212ENST00000540304 Q8IYB0 196 aa8.19□□□□□ -1.1
CLIP1-212ENST00000540304 RNF2Q99496 336 aa8.19□□□□□ -1.1
CLIP1-212ENST00000540304 LIME1Q9H400 295 aa8.19□□□□□ -1.1
CLIP1-212ENST00000540304 MSRB2Q9Y3D2 182 aa8.19□□□□□ -1.1
CLIP1-212ENST00000540304 SLC25A15Q9Y619 301 aa8.19□□□□□ -1.1
CLIP1-212ENST00000540304 TGOLN2O43493 480 aa8.19□□□□□ -1.1
CLIP1-212ENST00000540304 KNG1P01042 644 aa8.19□□□□□ -1.1
CLIP1-212ENST00000540304 GZMHP20718 246 aa8.19□□□□□ -1.1
CLIP1-212ENST00000540304 DUSP1P28562 367 aa8.19□□□□□ -1.1
CLIP1-212ENST00000540304 GLP1RP43220 463 aa8.19□□□□□ -1.1
CLIP1-212ENST00000540304 RBM39Q14498 530 aaKnown RBP8.19□□□□□ -1.1
CLIP1-212ENST00000540304 LRRC37A5PQ49AS3 106 aa8.19□□□□□ -1.1
CLIP1-212ENST00000540304 ZNF474Q6S9Z5 364 aaPredicted RBP8.19□□□□□ -1.1
CLIP1-212ENST00000540304 SHISA2Q6UWI4 295 aa8.19□□□□□ -1.1
CLIP1-212ENST00000540304 C1orf174Q8IYL3 243 aa8.19□□□□□ -1.1
CLIP1-212ENST00000540304 SCCPDHQ8NBX0 429 aa8.19□□□□□ -1.1
CLIP1-212ENST00000540304 SEC22AQ96IW7 307 aa8.19□□□□□ -1.1
CLIP1-212ENST00000540304 TLNRD1Q9H1K6 362 aa8.19□□□□□ -1.1
CLIP1-212ENST00000540304 WDR13Q9H1Z4 485 aa8.19□□□□□ -1.1
CLIP1-212ENST00000540304 SLC25A32Q9H2D1 315 aa8.19□□□□□ -1.1
CLIP1-212ENST00000540304 RAB18Q9NP72 206 aa8.19□□□□□ -1.1
CLIP1-212ENST00000540304 TMEM100Q9NV29 134 aa8.19□□□□□ -1.1
CLIP1-212ENST00000540304 YLPM1P49750 1951 aaKnown RBP8.19□□□□□ -1.1
CLIP1-212ENST00000540304 HEATR1Q9H583 2144 aaKnown RBP8.19□□□□□ -1.1
CLIP1-212ENST00000540304 IGHV2OR16-5A0A0B4J2B6 119 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.18□□□□□ -1.1
CLIP1-212ENST00000540304 HSPB6O14558 160 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 RP2O75695 350 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 MBPP02686 304 aaPredicted RBP8.18□□□□□ -1.1
CLIP1-212ENST00000540304 PPBPP02775 128 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 RPLP1P05386 114 aaKnown RBP8.18□□□□□ -1.1
CLIP1-212ENST00000540304 HOXB5P09067 269 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 RPA2P15927 270 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 HOXA5P20719 270 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 FCGR2CP31995 323 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 TIMM23BQ5SRD1 257 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 GSG1LQ6UXU4 331 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 SUMF2Q8NBJ7 301 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 OR8G5Q8NG78 346 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 ZNF596Q8TC21 504 aa8.18□□□□□ -1.1
CLIP1-212ENST00000540304 BARX1Q9HBU1 254 aaPredicted RBP8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms