RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 SMPD2O60906 423 aa11.16□□□□□ -0.62
LDLR-203ENST00000535915 OR2H2O95918 312 aa11.16□□□□□ -0.62
LDLR-203ENST00000535915 OR13C7P0DN81 318 aa11.16□□□□□ -0.62
LDLR-203ENST00000535915 FOLR2P14207 255 aa11.16□□□□□ -0.62
LDLR-203ENST00000535915 TMEM178AQ8NBL3 297 aa11.16□□□□□ -0.62
LDLR-203ENST00000535915 TCTEX1D2Q8WW35 142 aa11.16□□□□□ -0.62
LDLR-203ENST00000535915 GPR146Q96CH1 333 aa11.16□□□□□ -0.62
LDLR-203ENST00000535915 CDH20Q9HBT6 801 aa11.16□□□□□ -0.62
LDLR-203ENST00000535915 DCAF16Q9NXF7 216 aa11.16□□□□□ -0.62
LDLR-203ENST00000535915 TRAPPC2LQ9UL33 140 aa11.16□□□□□ -0.62
LDLR-203ENST00000535915 RNF115Q9Y4L5 304 aa11.16□□□□□ -0.62
LDLR-203ENST00000535915 LRP5LA4QPB2 252 aa11.16□□□□□ -0.62
LDLR-203ENST00000535915 LY86O95711 162 aa11.16□□□□□ -0.62
LDLR-203ENST00000535915 GPX4P36969 197 aaPredicted RBP11.16□□□□□ -0.62
LDLR-203ENST00000535915 MDH2P40926 338 aaKnown RBP11.16□□□□□ -0.62
LDLR-203ENST00000535915 UBE2NP61088 152 aaKnown RBP11.16□□□□□ -0.62
LDLR-203ENST00000535915 ERVS71-1P61550 626 aa11.16□□□□□ -0.62
LDLR-203ENST00000535915 RUNX1Q01196 453 aa11.16□□□□□ -0.62
LDLR-203ENST00000535915 PMP22Q01453 160 aa11.16□□□□□ -0.62
LDLR-203ENST00000535915 ZNF561Q8N587 486 aa11.16□□□□□ -0.62
LDLR-203ENST00000535915 UBALD1Q8TB05 177 aa11.16□□□□□ -0.62
LDLR-203ENST00000535915 RARRES2Q99969 163 aa11.16□□□□□ -0.62
LDLR-203ENST00000535915 UFSP2Q9NUQ7 469 aa11.16□□□□□ -0.62
LDLR-203ENST00000535915 PPP1R3CQ9UQK1 317 aa11.16□□□□□ -0.62
LDLR-203ENST00000535915 POLDIP2Q9Y2S7 368 aa11.16□□□□□ -0.62
LDLR-203ENST00000535915 DSPP15924 2871 aaKnown RBP11.15□□□□□ -0.62
LDLR-203ENST00000535915 H3BP45 60 aa11.15□□□□□ -0.62
LDLR-203ENST00000535915 BTF3P20290 206 aaKnown RBP11.15□□□□□ -0.62
LDLR-203ENST00000535915 PAX9P55771 341 aa11.15□□□□□ -0.62
LDLR-203ENST00000535915 IZUMO4Q1ZYL8 232 aa11.15□□□□□ -0.62
LDLR-203ENST00000535915 Q8IYB0 196 aa11.15□□□□□ -0.62
LDLR-203ENST00000535915 GCNT2Q8N0V5 402 aa11.15□□□□□ -0.62
LDLR-203ENST00000535915 GNPNAT1Q96EK6 184 aaPredicted RBP11.15□□□□□ -0.62
LDLR-203ENST00000535915 GMPPAQ96IJ6 420 aaPredicted RBP11.15□□□□□ -0.62
LDLR-203ENST00000535915 METTL1Q9UBP6 276 aaKnown RBP11.15□□□□□ -0.62
LDLR-203ENST00000535915 PIGBOS1A0A0B4J2F0 54 aa11.15□□□□□ -0.63
LDLR-203ENST00000535915 A0A1B0GU03 582 aa11.15□□□□□ -0.63
LDLR-203ENST00000535915 CDIPTO14735 213 aa11.15□□□□□ -0.63
LDLR-203ENST00000535915 CLN5O75503 358 aa11.15□□□□□ -0.63
LDLR-203ENST00000535915 LYZL6O75951 148 aa11.15□□□□□ -0.63
LDLR-203ENST00000535915 NXPH2O95156 264 aa11.15□□□□□ -0.63
LDLR-203ENST00000535915 DAOP14920 347 aa11.15□□□□□ -0.63
LDLR-203ENST00000535915 CCL20P78556 96 aa11.15□□□□□ -0.63
LDLR-203ENST00000535915 TGFBR3Q03167 851 aa11.15□□□□□ -0.63
LDLR-203ENST00000535915 ZNF497Q6ZNH5 498 aa11.15□□□□□ -0.63
LDLR-203ENST00000535915 MOB1BQ7L9L4 216 aa11.15□□□□□ -0.63
LDLR-203ENST00000535915 SNIP1Q8TAD8 396 aaKnown RBP11.15□□□□□ -0.63
LDLR-203ENST00000535915 ZDHHC11Q9H8X9 412 aa11.15□□□□□ -0.63
LDLR-203ENST00000535915 KCNS2Q9ULS6 477 aa11.15□□□□□ -0.63
LDLR-203ENST00000535915 DMRT1Q9Y5R6 373 aa11.15□□□□□ -0.63
LDLR-203ENST00000535915 ASPMQ8IZT6 3477 aa11.14□□□□□ -0.63
LDLR-203ENST00000535915 A0A1W2PPE3 182 aa11.14□□□□□ -0.63
LDLR-203ENST00000535915 ZNF16P17020 682 aaPredicted RBP11.14□□□□□ -0.63
LDLR-203ENST00000535915 IGHV1-2P23083 117 aa11.14□□□□□ -0.63
LDLR-203ENST00000535915 PAX6P26367 422 aa11.14□□□□□ -0.63
LDLR-203ENST00000535915 EIF2S3P41091 472 aaKnown RBP11.14□□□□□ -0.63
LDLR-203ENST00000535915 RPL23AP62750 156 aaKnown RBP11.14□□□□□ -0.63
LDLR-203ENST00000535915 TESK1Q15569 626 aa11.14□□□□□ -0.63
LDLR-203ENST00000535915 ALKBH6Q3KRA9 238 aa11.14□□□□□ -0.63
LDLR-203ENST00000535915 ATP5SQ99766 215 aa11.14□□□□□ -0.63
LDLR-203ENST00000535915 TMEM9BQ9NQ34 198 aa11.14□□□□□ -0.63
LDLR-203ENST00000535915 TREM2Q9NZC2 230 aa11.14□□□□□ -0.63
LDLR-203ENST00000535915 A0A1B0GW64 132 aa11.14□□□□□ -0.63
LDLR-203ENST00000535915 NPIPB11E5RHQ5 1161 aa11.14□□□□□ -0.63
LDLR-203ENST00000535915 J3QW42 95 aa11.14□□□□□ -0.63
LDLR-203ENST00000535915 GRPP07492 148 aa11.14□□□□□ -0.63
LDLR-203ENST00000535915 NQO2P16083 231 aa11.14□□□□□ -0.63
LDLR-203ENST00000535915 RAB2AP61019 212 aa11.14□□□□□ -0.63
LDLR-203ENST00000535915 KDF1Q8NAX2 398 aaPredicted RBP11.14□□□□□ -0.63
LDLR-203ENST00000535915 SLC25A40Q8TBP6 338 aa11.14□□□□□ -0.63
LDLR-203ENST00000535915 HIST1H2BAQ96A08 127 aa11.14□□□□□ -0.63
LDLR-203ENST00000535915 ISOC2Q96AB3 205 aa11.14□□□□□ -0.63
LDLR-203ENST00000535915 RBFOX3A6NFN3 312 aa11.13□□□□□ -0.63
LDLR-203ENST00000535915 IGLV2-14P01704 120 aa11.13□□□□□ -0.63
LDLR-203ENST00000535915 ERVK11-1P61568 191 aa11.13□□□□□ -0.63
LDLR-203ENST00000535915 TMEM267Q0VDI3 215 aaPredicted RBP11.13□□□□□ -0.63
LDLR-203ENST00000535915 OR8G1Q15617 311 aa11.13□□□□□ -0.63
LDLR-203ENST00000535915 SOHLH1Q5JUK2 328 aa11.13□□□□□ -0.63
LDLR-203ENST00000535915 AKR1C8PQ5T2L2 129 aa11.13□□□□□ -0.63
LDLR-203ENST00000535915 SLC25A24Q6NUK1 477 aa11.13□□□□□ -0.63
LDLR-203ENST00000535915 SPSB3Q6PJ21 355 aa11.13□□□□□ -0.63
LDLR-203ENST00000535915 SSX9Q7RTT3 188 aa11.13□□□□□ -0.63
LDLR-203ENST00000535915 OR1J1Q8NGS3 322 aa11.13□□□□□ -0.63
LDLR-203ENST00000535915 CACNG5Q9UF02 275 aa11.13□□□□□ -0.63
LDLR-203ENST00000535915 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.13□□□□□ -0.63
LDLR-203ENST00000535915 SH2D1BO14796 132 aa11.13□□□□□ -0.63
LDLR-203ENST00000535915 CNOT4O95628 575 aaKnown RBP11.13□□□□□ -0.63
LDLR-203ENST00000535915 PGA5P0DJD9 388 aa11.13□□□□□ -0.63
LDLR-203ENST00000535915 SLC25A6P12236 298 aa11.13□□□□□ -0.63
LDLR-203ENST00000535915 KRBOX4Q5JUW0 171 aa11.13□□□□□ -0.63
LDLR-203ENST00000535915 Q6ZRM9 215 aa11.13□□□□□ -0.63
LDLR-203ENST00000535915 OR14J1Q9UGF5 321 aa11.13□□□□□ -0.63
LDLR-203ENST00000535915 CACNA1DQ01668 2161 aa11.13□□□□□ -0.63
LDLR-203ENST00000535915 A0A1B0GV90 55 aa11.12□□□□□ -0.63
LDLR-203ENST00000535915 WDR1O75083 606 aa11.12□□□□□ -0.63
LDLR-203ENST00000535915 IGKV1-39P01597 117 aa11.12□□□□□ -0.63
LDLR-203ENST00000535915 IGKV1D-39P04432 117 aa11.12□□□□□ -0.63
LDLR-203ENST00000535915 SELEP16581 610 aa11.12□□□□□ -0.63
LDLR-203ENST00000535915 CEACAM6P40199 344 aa11.12□□□□□ -0.63
LDLR-203ENST00000535915 SULT1A1P50225 295 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms