RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 AK3Q9UIJ7 227 aa10.41□□□□□ -0.74
VPS28-216ENST00000533806 VWFP04275 2813 aa10.41□□□□□ -0.74
VPS28-216ENST00000533806 IGHV3-43A0A0B4J1X8 118 aa10.4□□□□□ -0.74
VPS28-216ENST00000533806 A0A1W2PPE3 182 aa10.4□□□□□ -0.74
VPS28-216ENST00000533806 A0A1W2PPI3 338 aa10.4□□□□□ -0.74
VPS28-216ENST00000533806 SMIM30A4D0T7 59 aa10.4□□□□□ -0.74
VPS28-216ENST00000533806 SLC31A2O15432 143 aa10.4□□□□□ -0.74
VPS28-216ENST00000533806 CLEC2LP0C7M8 214 aa10.4□□□□□ -0.74
VPS28-216ENST00000533806 IGHV3-43DP0DP04 118 aa10.4□□□□□ -0.74
VPS28-216ENST00000533806 GNG10P50151 68 aa10.4□□□□□ -0.74
VPS28-216ENST00000533806 ZNF137PP52743 207 aa10.4□□□□□ -0.74
VPS28-216ENST00000533806 MADCAM1Q13477 382 aa10.4□□□□□ -0.74
VPS28-216ENST00000533806 MORN2Q502X0 79 aa10.4□□□□□ -0.74
VPS28-216ENST00000533806 LY6G6FQ5SQ64 297 aa10.4□□□□□ -0.74
VPS28-216ENST00000533806 SHISA2Q6UWI4 295 aa10.4□□□□□ -0.74
VPS28-216ENST00000533806 Q6ZTK2 550 aa10.4□□□□□ -0.74
VPS28-216ENST00000533806 TMEM219Q86XT9 240 aa10.4□□□□□ -0.74
VPS28-216ENST00000533806 THNSL2Q86YJ6 484 aa10.4□□□□□ -0.74
VPS28-216ENST00000533806 CFHR4Q92496 578 aa10.4□□□□□ -0.74
VPS28-216ENST00000533806 HDHD3Q9BSH5 251 aaPredicted RBP10.4□□□□□ -0.74
VPS28-216ENST00000533806 RANBP3Q9H6Z4 567 aaPredicted RBP10.4□□□□□ -0.74
VPS28-216ENST00000533806 RAB9BQ9NP90 201 aa10.4□□□□□ -0.74
VPS28-216ENST00000533806 PITPNC1Q9UKF7 332 aa10.4□□□□□ -0.74
VPS28-216ENST00000533806 AMMECR1Q9Y4X0 333 aaPredicted RBP10.4□□□□□ -0.74
VPS28-216ENST00000533806 NBEAL1Q6ZS30 2694 aa10.4□□□□□ -0.75
VPS28-216ENST00000533806 LOC100506127A0A0U1RQW1 187 aa10.39□□□□□ -0.75
VPS28-216ENST00000533806 SMIM18P0DKX4 95 aa10.39□□□□□ -0.75
VPS28-216ENST00000533806 CD24P25063 80 aa10.39□□□□□ -0.75
VPS28-216ENST00000533806 BRS3P32247 399 aa10.39□□□□□ -0.75
VPS28-216ENST00000533806 ZNF816Q0VGE8 651 aaPredicted RBP10.39□□□□□ -0.75
VPS28-216ENST00000533806 CCDC144NLQ6NUI1 221 aa10.39□□□□□ -0.75
VPS28-216ENST00000533806 SFXN4Q6P4A7 337 aa10.39□□□□□ -0.75
VPS28-216ENST00000533806 PRR18Q8N4B5 295 aa10.39□□□□□ -0.75
VPS28-216ENST00000533806 OR52L2PQ8NGH6 319 aa10.39□□□□□ -0.75
VPS28-216ENST00000533806 OR10R2Q8NGX6 335 aa10.39□□□□□ -0.75
VPS28-216ENST00000533806 CITED1Q99966 193 aa10.39□□□□□ -0.75
VPS28-216ENST00000533806 C12orf4Q9NQ89 552 aa10.39□□□□□ -0.75
VPS28-216ENST00000533806 OR2S2Q9NQN1 319 aa10.39□□□□□ -0.75
VPS28-216ENST00000533806 KCNIP1Q9NZI2 227 aa10.39□□□□□ -0.75
VPS28-216ENST00000533806 JPT1Q9UK76 154 aa10.39□□□□□ -0.75
VPS28-216ENST00000533806 RNF114Q9Y508 228 aa10.39□□□□□ -0.75
VPS28-216ENST00000533806 MFNGO00587 321 aa10.38□□□□□ -0.75
VPS28-216ENST00000533806 TIMM23O14925 209 aa10.38□□□□□ -0.75
VPS28-216ENST00000533806 YPEL1O60688 119 aa10.38□□□□□ -0.75
VPS28-216ENST00000533806 AMY1AP04745 511 aa10.38□□□□□ -0.75
VPS28-216ENST00000533806 AMY2AP04746 511 aa10.38□□□□□ -0.75
VPS28-216ENST00000533806 TGFBR1P36897 503 aa10.38□□□□□ -0.75
VPS28-216ENST00000533806 MNDAP41218 407 aa10.38□□□□□ -0.75
VPS28-216ENST00000533806 RAB7AP51149 207 aa10.38□□□□□ -0.75
VPS28-216ENST00000533806 SRSF4Q08170 494 aaKnown RBP10.38□□□□□ -0.75
VPS28-216ENST00000533806 EBI3Q14213 229 aa10.38□□□□□ -0.75
VPS28-216ENST00000533806 GNMTQ14749 295 aa10.38□□□□□ -0.75
VPS28-216ENST00000533806 MOB1BQ7L9L4 216 aa10.38□□□□□ -0.75
VPS28-216ENST00000533806 OR8H3Q8N146 312 aa10.38□□□□□ -0.75
VPS28-216ENST00000533806 OR10V1Q8NGI7 309 aa10.38□□□□□ -0.75
VPS28-216ENST00000533806 OR10X1Q8NGY0 326 aa10.38□□□□□ -0.75
VPS28-216ENST00000533806 TOMM40LQ969M1 308 aa10.38□□□□□ -0.75
VPS28-216ENST00000533806 RPEQ96AT9 228 aa10.38□□□□□ -0.75
VPS28-216ENST00000533806 GALMQ96C23 342 aa10.38□□□□□ -0.75
VPS28-216ENST00000533806 RAB3CQ96E17 227 aa10.38□□□□□ -0.75
VPS28-216ENST00000533806 YPEL2Q96QA6 119 aa10.38□□□□□ -0.75
VPS28-216ENST00000533806 NPFFR1Q9GZQ6 430 aa10.38□□□□□ -0.75
VPS28-216ENST00000533806 ZNF702PQ9H963 129 aa10.38□□□□□ -0.75
VPS28-216ENST00000533806 Q9N2K0 584 aa10.38□□□□□ -0.75
VPS28-216ENST00000533806 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.38□□□□□ -0.75
VPS28-216ENST00000533806 GNG12Q9UBI6 72 aa10.38□□□□□ -0.75
VPS28-216ENST00000533806 DAPK2Q9UIK4 370 aa10.38□□□□□ -0.75
VPS28-216ENST00000533806 SIGLEC9Q9Y336 463 aa10.38□□□□□ -0.75
VPS28-216ENST00000533806 MGAM2Q2M2H8 2515 aa10.38□□□□□ -0.75
VPS28-216ENST00000533806 HSD17B6O14756 317 aa10.37□□□□□ -0.75
VPS28-216ENST00000533806 GAPDHP04406 335 aaKnown RBP10.37□□□□□ -0.75
VPS28-216ENST00000533806 SNRPBP14678 240 aaKnown RBP10.37□□□□□ -0.75
VPS28-216ENST00000533806 HIST1H1DP16402 221 aaKnown RBP10.37□□□□□ -0.75
VPS28-216ENST00000533806 PPP1CCP36873 323 aaKnown RBP10.37□□□□□ -0.75
VPS28-216ENST00000533806 ARHGDIBP52566 201 aa10.37□□□□□ -0.75
VPS28-216ENST00000533806 SCAND1P57086 179 aa10.37□□□□□ -0.75
VPS28-216ENST00000533806 BLCAPP62952 87 aa10.37□□□□□ -0.75
VPS28-216ENST00000533806 MXD1Q05195 221 aa10.37□□□□□ -0.75
VPS28-216ENST00000533806 TIMM50Q3ZCQ8 353 aa10.37□□□□□ -0.75
VPS28-216ENST00000533806 Q6ZS46 218 aa10.37□□□□□ -0.75
VPS28-216ENST00000533806 C16orf82Q7Z2V1 217 aa10.37□□□□□ -0.75
VPS28-216ENST00000533806 ODF3L1Q8IXM7 274 aa10.37□□□□□ -0.75
VPS28-216ENST00000533806 DRAM1Q8N682 238 aa10.37□□□□□ -0.75
VPS28-216ENST00000533806 OR4C13Q8NGP0 309 aa10.37□□□□□ -0.75
VPS28-216ENST00000533806 OR13F1Q8NGS4 319 aa10.37□□□□□ -0.75
VPS28-216ENST00000533806 WIPF2Q8TF74 440 aaPredicted RBP10.37□□□□□ -0.75
VPS28-216ENST00000533806 RTN4IP1Q8WWV3 396 aaPredicted RBP10.37□□□□□ -0.75
VPS28-216ENST00000533806 RBM14Q96PK6 669 aaKnown RBP10.37□□□□□ -0.75
VPS28-216ENST00000533806 VCX3AQ9NNX9 186 aa10.37□□□□□ -0.75
VPS28-216ENST00000533806 SERTAD4Q9NUC0 356 aa10.37□□□□□ -0.75
VPS28-216ENST00000533806 IGHV1-3A0A0C4DH29 117 aa10.36□□□□□ -0.75
VPS28-216ENST00000533806 IGKV1-6A0A0C4DH72 117 aa10.36□□□□□ -0.75
VPS28-216ENST00000533806 METTL21EPA6NDL7 271 aa10.36□□□□□ -0.75
VPS28-216ENST00000533806 AIREO43918 545 aa10.36□□□□□ -0.75
VPS28-216ENST00000533806 TMEM127O75204 238 aa10.36□□□□□ -0.75
VPS28-216ENST00000533806 OR2F2O95006 317 aa10.36□□□□□ -0.75
VPS28-216ENST00000533806 FAM106CPP0CH98 169 aa10.36□□□□□ -0.75
VPS28-216ENST00000533806 GNB3P16520 340 aa10.36□□□□□ -0.75
VPS28-216ENST00000533806 RPS19P39019 145 aaKnown RBP10.36□□□□□ -0.75
VPS28-216ENST00000533806 OR56B4Q8NH76 319 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms