RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 CHATP28329 748 aa11.1□□□□□ -0.63
CPSF1-201ENST00000526271 ZNF134P52741 427 aa11.1□□□□□ -0.63
CPSF1-201ENST00000526271 FOXE3Q13461 319 aa11.1□□□□□ -0.63
CPSF1-201ENST00000526271 SSX1Q16384 188 aa11.1□□□□□ -0.63
CPSF1-201ENST00000526271 C9orf66Q5T8R8 295 aa11.1□□□□□ -0.63
CPSF1-201ENST00000526271 LIPKQ5VXJ0 399 aa11.1□□□□□ -0.63
CPSF1-201ENST00000526271 C5orf24Q7Z6I8 188 aa11.1□□□□□ -0.63
CPSF1-201ENST00000526271 MOB3BQ86TA1 216 aa11.1□□□□□ -0.63
CPSF1-201ENST00000526271 FOXRED2Q8IWF2 684 aa11.1□□□□□ -0.63
CPSF1-201ENST00000526271 MS4A15Q8N5U1 240 aa11.1□□□□□ -0.63
CPSF1-201ENST00000526271 LINC00311Q8N616 119 aa11.1□□□□□ -0.63
CPSF1-201ENST00000526271 PXT1Q8NFP0 134 aa11.1□□□□□ -0.63
CPSF1-201ENST00000526271 RITA1Q96K30 269 aa11.1□□□□□ -0.63
CPSF1-201ENST00000526271 S1PR3Q99500 378 aa11.1□□□□□ -0.63
CPSF1-201ENST00000526271 MRPS26Q9BYN8 205 aaKnown RBP11.1□□□□□ -0.63
CPSF1-201ENST00000526271 LIN7CQ9NUP9 197 aaKnown RBP11.1□□□□□ -0.63
CPSF1-201ENST00000526271 IGHV3-43A0A0B4J1X8 118 aa11.09□□□□□ -0.63
CPSF1-201ENST00000526271 PNMA8CA0A1B0GUJ8 204 aa11.09□□□□□ -0.63
CPSF1-201ENST00000526271 A0A1W2PP11 408 aa11.09□□□□□ -0.63
CPSF1-201ENST00000526271 SULT1B1O43704 296 aa11.09□□□□□ -0.63
CPSF1-201ENST00000526271 IGHV3-43DP0DP04 118 aa11.09□□□□□ -0.63
CPSF1-201ENST00000526271 GP2P55259 537 aaKnown RBP11.09□□□□□ -0.63
CPSF1-201ENST00000526271 GNB1P62873 340 aa11.09□□□□□ -0.63
CPSF1-201ENST00000526271 SLC35B1P78383 322 aa11.09□□□□□ -0.63
CPSF1-201ENST00000526271 DCTN2Q13561 401 aaKnown RBP11.09□□□□□ -0.63
CPSF1-201ENST00000526271 IL13RA2Q14627 380 aa11.09□□□□□ -0.63
CPSF1-201ENST00000526271 NEDD8Q15843 81 aa11.09□□□□□ -0.63
CPSF1-201ENST00000526271 SUMF2Q8NBJ7 301 aa11.09□□□□□ -0.63
CPSF1-201ENST00000526271 OR5M8Q8NGP6 311 aa11.09□□□□□ -0.63
CPSF1-201ENST00000526271 OR8U1Q8NH10 309 aa11.09□□□□□ -0.63
CPSF1-201ENST00000526271 MUC7Q8TAX7 377 aa11.09□□□□□ -0.63
CPSF1-201ENST00000526271 GPR148Q8TDV2 347 aa11.09□□□□□ -0.63
CPSF1-201ENST00000526271 RTN4IP1Q8WWV3 396 aaPredicted RBP11.09□□□□□ -0.63
CPSF1-201ENST00000526271 ZNF256Q9Y2P7 627 aaPredicted RBP11.09□□□□□ -0.63
CPSF1-201ENST00000526271 NCBP2LA6PVI3 153 aaKnown RBP11.08□□□□□ -0.64
CPSF1-201ENST00000526271 I3L521 148 aa11.08□□□□□ -0.64
CPSF1-201ENST00000526271 SC5DO75845 299 aa11.08□□□□□ -0.64
CPSF1-201ENST00000526271 CDRT1O95170 752 aa11.08□□□□□ -0.64
CPSF1-201ENST00000526271 TFAP2AP05549 437 aa11.08□□□□□ -0.64
CPSF1-201ENST00000526271 ELANEP08246 267 aa11.08□□□□□ -0.64
CPSF1-201ENST00000526271 HCKP08631 526 aa11.08□□□□□ -0.64
CPSF1-201ENST00000526271 PSMB9P28065 219 aa11.08□□□□□ -0.64
CPSF1-201ENST00000526271 PPIFP30405 207 aaKnown RBP11.08□□□□□ -0.64
CPSF1-201ENST00000526271 TRAM1Q15629 374 aa11.08□□□□□ -0.64
CPSF1-201ENST00000526271 ZNF260Q3ZCT1 412 aa11.08□□□□□ -0.64
CPSF1-201ENST00000526271 SLC16A12Q6ZSM3 486 aa11.08□□□□□ -0.64
CPSF1-201ENST00000526271 ZNF565Q8N9K5 539 aa11.08□□□□□ -0.64
CPSF1-201ENST00000526271 OR11H1Q8NG94 326 aa11.08□□□□□ -0.64
CPSF1-201ENST00000526271 OR10A7Q8NGE5 316 aa11.08□□□□□ -0.64
CPSF1-201ENST00000526271 OR10X1Q8NGY0 326 aa11.08□□□□□ -0.64
CPSF1-201ENST00000526271 C4orf3Q8WVX3 66 aa11.08□□□□□ -0.64
CPSF1-201ENST00000526271 ORAI1Q96D31 301 aa11.08□□□□□ -0.64
CPSF1-201ENST00000526271 KCTD7Q96MP8 289 aa11.08□□□□□ -0.64
CPSF1-201ENST00000526271 DPCDQ9BVM2 203 aaPredicted RBP11.08□□□□□ -0.64
CPSF1-201ENST00000526271 VCX3AQ9NNX9 186 aa11.08□□□□□ -0.64
CPSF1-201ENST00000526271 NDUFB11Q9NX14 153 aa11.08□□□□□ -0.64
CPSF1-201ENST00000526271 DHDHQ9UQ10 334 aa11.08□□□□□ -0.64
CPSF1-201ENST00000526271 G3V318 75 aa11.07□□□□□ -0.64
CPSF1-201ENST00000526271 GAPDHP04406 335 aaKnown RBP11.07□□□□□ -0.64
CPSF1-201ENST00000526271 IGF1P05019 195 aa11.07□□□□□ -0.64
CPSF1-201ENST00000526271 PSMA1P25786 263 aaKnown RBP11.07□□□□□ -0.64
CPSF1-201ENST00000526271 CNTFRP26992 372 aa11.07□□□□□ -0.64
CPSF1-201ENST00000526271 ALDH3B2P48448 385 aa11.07□□□□□ -0.64
CPSF1-201ENST00000526271 RPS25P62851 125 aaKnown RBP11.07□□□□□ -0.64
CPSF1-201ENST00000526271 Q499Y3 187 aa11.07□□□□□ -0.64
CPSF1-201ENST00000526271 CXorf66Q5JRM2 361 aaPredicted RBP11.07□□□□□ -0.64
CPSF1-201ENST00000526271 CD200R1LQ6Q8B3 271 aa11.07□□□□□ -0.64
CPSF1-201ENST00000526271 TMEM91Q6ZNR0 172 aa11.07□□□□□ -0.64
CPSF1-201ENST00000526271 OVCH2Q7RTZ1 564 aa11.07□□□□□ -0.64
CPSF1-201ENST00000526271 OR13C5Q8NGS8 318 aa11.07□□□□□ -0.64
CPSF1-201ENST00000526271 TNFAIP8L1Q8WVP5 186 aa11.07□□□□□ -0.64
CPSF1-201ENST00000526271 RCHY1Q96PM5 261 aa11.07□□□□□ -0.64
CPSF1-201ENST00000526271 IFT22Q9H7X7 185 aa11.07□□□□□ -0.64
CPSF1-201ENST00000526271 TPSG1Q9NRR2 321 aa11.07□□□□□ -0.64
CPSF1-201ENST00000526271 GFOD1Q9NXC2 390 aa11.07□□□□□ -0.64
CPSF1-201ENST00000526271 TAS2R4Q9NYW5 299 aa11.07□□□□□ -0.64
CPSF1-201ENST00000526271 TRBV5-7A0A0A0MS05 114 aa11.06□□□□□ -0.64
CPSF1-201ENST00000526271 GEMIN2O14893 280 aaKnown RBP11.06□□□□□ -0.64
CPSF1-201ENST00000526271 GPX5O75715 221 aa11.06□□□□□ -0.64
CPSF1-201ENST00000526271 SNRPBP14678 240 aaKnown RBP11.06□□□□□ -0.64
CPSF1-201ENST00000526271 GALP22466 123 aa11.06□□□□□ -0.64
CPSF1-201ENST00000526271 CD1BP29016 333 aa11.06□□□□□ -0.64
CPSF1-201ENST00000526271 ZNF137PP52743 207 aa11.06□□□□□ -0.64
CPSF1-201ENST00000526271 ACSM3Q53FZ2 586 aa11.06□□□□□ -0.64
CPSF1-201ENST00000526271 CT45A1Q5HYN5 189 aa11.06□□□□□ -0.64
CPSF1-201ENST00000526271 SERPINA12Q8IW75 414 aa11.06□□□□□ -0.64
CPSF1-201ENST00000526271 ZNF491Q8N8L2 437 aa11.06□□□□□ -0.64
CPSF1-201ENST00000526271 OR2T10Q8NGZ9 312 aa11.06□□□□□ -0.64
CPSF1-201ENST00000526271 CT45A3Q8NHU0 189 aa11.06□□□□□ -0.64
CPSF1-201ENST00000526271 CCDC107Q8WV48 283 aa11.06□□□□□ -0.64
CPSF1-201ENST00000526271 TMEM203Q969S6 136 aa11.06□□□□□ -0.64
CPSF1-201ENST00000526271 TMED9Q9BVK6 235 aa11.06□□□□□ -0.64
CPSF1-201ENST00000526271 BARHL1Q9BZE3 327 aa11.06□□□□□ -0.64
CPSF1-201ENST00000526271 ALX4Q9H161 411 aaPredicted RBP11.06□□□□□ -0.64
CPSF1-201ENST00000526271 ZNF580Q9UK33 172 aa11.06□□□□□ -0.64
CPSF1-201ENST00000526271 FBXO7Q9Y3I1 522 aa11.06□□□□□ -0.64
CPSF1-201ENST00000526271 TNCP24821 2201 aa11.05□□□□□ -0.64
CPSF1-201ENST00000526271 LCE6AA0A183 80 aa11.05□□□□□ -0.64
CPSF1-201ENST00000526271 TRDV1A0A1B0GX56 115 aa11.05□□□□□ -0.64
CPSF1-201ENST00000526271 SOX15O60248 233 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms