RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 SRSF7Q16629 238 aaKnown RBP eCLIP11.55□□□□□ -0.56
NUP54-216ENST00000514901 PNLIPRP3Q17RR3 467 aa11.55□□□□□ -0.56
NUP54-216ENST00000514901 CCDC144NLQ6NUI1 221 aa11.55□□□□□ -0.56
NUP54-216ENST00000514901 AP3S1Q92572 193 aa11.55□□□□□ -0.56
NUP54-216ENST00000514901 S100A16Q96FQ6 103 aaKnown RBP11.55□□□□□ -0.56
NUP54-216ENST00000514901 CMTM3Q96MX0 182 aa11.55□□□□□ -0.56
NUP54-216ENST00000514901 DUX5Q96PT3 197 aa11.55□□□□□ -0.56
NUP54-216ENST00000514901 ABCG5Q9H222 651 aa11.55□□□□□ -0.56
NUP54-216ENST00000514901 JPT1Q9UK76 154 aa11.55□□□□□ -0.56
NUP54-216ENST00000514901 A0A075B6Q4 140 aa11.54□□□□□ -0.56
NUP54-216ENST00000514901 TRDCB7Z8K6 153 aa11.54□□□□□ -0.56
NUP54-216ENST00000514901 LY6LH3BQJ8 138 aa11.54□□□□□ -0.56
NUP54-216ENST00000514901 NOL3O60936 208 aaKnown RBP11.54□□□□□ -0.56
NUP54-216ENST00000514901 IGHV4-59P01825 116 aa11.54□□□□□ -0.56
NUP54-216ENST00000514901 IL3RAP26951 378 aa11.54□□□□□ -0.56
NUP54-216ENST00000514901 SRSF2Q01130 221 aaKnown RBP11.54□□□□□ -0.56
NUP54-216ENST00000514901 MADCAM1Q13477 382 aa11.54□□□□□ -0.56
NUP54-216ENST00000514901 KRTAP24-1Q3LI83 254 aa11.54□□□□□ -0.56
NUP54-216ENST00000514901 UBE2NLQ5JXB2 153 aa11.54□□□□□ -0.56
NUP54-216ENST00000514901 LDLRAD2Q5SZI1 272 aa11.54□□□□□ -0.56
NUP54-216ENST00000514901 HACD4Q5VWC8 232 aa11.54□□□□□ -0.56
NUP54-216ENST00000514901 OLFML2AQ68BL7 652 aa11.54□□□□□ -0.56
NUP54-216ENST00000514901 OR10X1Q8NGY0 326 aa11.54□□□□□ -0.56
NUP54-216ENST00000514901 UBALD1Q8TB05 177 aa11.54□□□□□ -0.56
NUP54-216ENST00000514901 SLC25A38Q96DW6 304 aa11.54□□□□□ -0.56
NUP54-216ENST00000514901 CYYR1Q96J86 154 aa11.54□□□□□ -0.56
NUP54-216ENST00000514901 OCSTAMPQ9BR26 566 aa11.54□□□□□ -0.56
NUP54-216ENST00000514901 HDHD3Q9BSH5 251 aaPredicted RBP11.54□□□□□ -0.56
NUP54-216ENST00000514901 ABCB10Q9NRK6 738 aa11.54□□□□□ -0.56
NUP54-216ENST00000514901 HILPDAQ9Y5L2 63 aa11.54□□□□□ -0.56
NUP54-216ENST00000514901 IGHV3-43A0A0B4J1X8 118 aa11.53□□□□□ -0.56
NUP54-216ENST00000514901 YPEL1O60688 119 aa11.53□□□□□ -0.56
NUP54-216ENST00000514901 CRYBA1P05813 215 aa11.53□□□□□ -0.56
NUP54-216ENST00000514901 IGHV3-43DP0DP04 118 aa11.53□□□□□ -0.56
NUP54-216ENST00000514901 ZNF182P17025 639 aaPredicted RBP11.53□□□□□ -0.56
NUP54-216ENST00000514901 DTYMKP23919 212 aa11.53□□□□□ -0.56
NUP54-216ENST00000514901 BRS3P32247 399 aa11.53□□□□□ -0.56
NUP54-216ENST00000514901 KIR2DS4P43632 304 aa11.53□□□□□ -0.56
NUP54-216ENST00000514901 GNG10P50151 68 aa11.53□□□□□ -0.56
NUP54-216ENST00000514901 HLA-DRB3P79483 266 aa11.53□□□□□ -0.56
NUP54-216ENST00000514901 KIR2DS1Q14954 304 aa11.53□□□□□ -0.56
NUP54-216ENST00000514901 ZNF260Q3ZCT1 412 aa11.53□□□□□ -0.56
NUP54-216ENST00000514901 MORN2Q502X0 79 aa11.53□□□□□ -0.56
NUP54-216ENST00000514901 UTF1Q5T230 341 aa11.53□□□□□ -0.56
NUP54-216ENST00000514901 TPTE2P1Q5T6R2 138 aa11.53□□□□□ -0.56
NUP54-216ENST00000514901 MZT2AQ6P582 158 aa11.53□□□□□ -0.56
NUP54-216ENST00000514901 DYNAPQ8N1N2 210 aa11.53□□□□□ -0.56
NUP54-216ENST00000514901 SAMD12Q8N8I0 201 aa11.53□□□□□ -0.56
NUP54-216ENST00000514901 LEAP2Q969E1 77 aa11.53□□□□□ -0.56
NUP54-216ENST00000514901 RPEQ96AT9 228 aa11.53□□□□□ -0.56
NUP54-216ENST00000514901 YPEL2Q96QA6 119 aa11.53□□□□□ -0.56
NUP54-216ENST00000514901 C19orf24Q9BVV8 132 aa11.53□□□□□ -0.56
NUP54-216ENST00000514901 CHIAQ9BZP6 476 aa11.53□□□□□ -0.56
NUP54-216ENST00000514901 VPREB3Q9UKI3 123 aa11.53□□□□□ -0.56
NUP54-216ENST00000514901 TRAV18A0A075B6X5 111 aa11.52□□□□□ -0.57
NUP54-216ENST00000514901 H3BUX3 64 aa11.52□□□□□ -0.57
NUP54-216ENST00000514901 XRCC3O43542 346 aa11.52□□□□□ -0.57
NUP54-216ENST00000514901 DIRAS3O95661 229 aa11.52□□□□□ -0.57
NUP54-216ENST00000514901 IGHV3-7P01780 117 aa11.52□□□□□ -0.57
NUP54-216ENST00000514901 FCGR3AP08637 254 aa11.52□□□□□ -0.57
NUP54-216ENST00000514901 ZBTB25P24278 435 aa11.52□□□□□ -0.57
NUP54-216ENST00000514901 SOX6P35712 828 aa11.52□□□□□ -0.57
NUP54-216ENST00000514901 MNDAP41218 407 aa11.52□□□□□ -0.57
NUP54-216ENST00000514901 RAB7AP51149 207 aa11.52□□□□□ -0.57
NUP54-216ENST00000514901 Q6ZPA2 131 aa11.52□□□□□ -0.57
NUP54-216ENST00000514901 LIAT1Q6ZQX7 453 aa11.52□□□□□ -0.57
NUP54-216ENST00000514901 Q6ZS49 121 aa11.52□□□□□ -0.57
NUP54-216ENST00000514901 SLC25A48Q6ZT89 311 aaKnown RBP11.52□□□□□ -0.57
NUP54-216ENST00000514901 OR52L2PQ8NGH6 319 aa11.52□□□□□ -0.57
NUP54-216ENST00000514901 OR10V1Q8NGI7 309 aa11.52□□□□□ -0.57
NUP54-216ENST00000514901 OR4A4PQ8NGN8 299 aa11.52□□□□□ -0.57
NUP54-216ENST00000514901 IL1F10Q8WWZ1 152 aa11.52□□□□□ -0.57
NUP54-216ENST00000514901 RAB18Q9NP72 206 aa11.52□□□□□ -0.57
NUP54-216ENST00000514901 TNFRSF19Q9NS68 423 aa11.52□□□□□ -0.57
NUP54-216ENST00000514901 PITPNC1Q9UKF7 332 aa11.52□□□□□ -0.57
NUP54-216ENST00000514901 SMIM31A0A1B0GVY4 71 aa11.51□□□□□ -0.57
NUP54-216ENST00000514901 ITGB1BP1O14713 200 aa11.51□□□□□ -0.57
NUP54-216ENST00000514901 APOA1P02647 267 aa11.51□□□□□ -0.57
NUP54-216ENST00000514901 LPLP06858 475 aa11.51□□□□□ -0.57
NUP54-216ENST00000514901 GNG2P59768 71 aa11.51□□□□□ -0.57
NUP54-216ENST00000514901 ACTG1P63261 375 aa11.51□□□□□ -0.57
NUP54-216ENST00000514901 CT45A1Q5HYN5 189 aa11.51□□□□□ -0.57
NUP54-216ENST00000514901 OR8H3Q8N146 312 aa11.51□□□□□ -0.57
NUP54-216ENST00000514901 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.51□□□□□ -0.57
NUP54-216ENST00000514901 ZNF439Q8NDP4 499 aa11.51□□□□□ -0.57
NUP54-216ENST00000514901 CT45A3Q8NHU0 189 aa11.51□□□□□ -0.57
NUP54-216ENST00000514901 GCDHQ92947 438 aaPredicted RBP11.51□□□□□ -0.57
NUP54-216ENST00000514901 TOMM40LQ969M1 308 aa11.51□□□□□ -0.57
NUP54-216ENST00000514901 MDFIQ99750 246 aa11.51□□□□□ -0.57
NUP54-216ENST00000514901 GHITMQ9H3K2 345 aa11.51□□□□□ -0.57
NUP54-216ENST00000514901 COMMD3Q9UBI1 195 aa11.51□□□□□ -0.57
NUP54-216ENST00000514901 A0A1W2PPE3 182 aa11.5□□□□□ -0.57
NUP54-216ENST00000514901 TMEM89A2RUT3 159 aa11.5□□□□□ -0.57
NUP54-216ENST00000514901 FAM181BA6NEQ2 426 aa11.5□□□□□ -0.57
NUP54-216ENST00000514901 TMEM235A6NFC5 223 aa11.5□□□□□ -0.57
NUP54-216ENST00000514901 FABP7O15540 132 aa11.5□□□□□ -0.57
NUP54-216ENST00000514901 HSPA12AO43301 675 aa11.5□□□□□ -0.57
NUP54-216ENST00000514901 GPR137BO60478 399 aa11.5□□□□□ -0.57
NUP54-216ENST00000514901 GAPDHP04406 335 aaKnown RBP11.5□□□□□ -0.57
NUP54-216ENST00000514901 SCTP09683 121 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms