RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 DYNLL1P63167 89 aaKnown RBP1.34□□□□□ -2.19
USP40-209ENST00000452724 HES1Q14469 280 aa1.34□□□□□ -2.19
USP40-209ENST00000452724 PDGFRLQ15198 375 aa1.34□□□□□ -2.19
USP40-209ENST00000452724 USF2Q15853 346 aaPredicted RBP1.34□□□□□ -2.19
USP40-209ENST00000452724 MAPK14Q16539 360 aa1.34□□□□□ -2.19
USP40-209ENST00000452724 KRTAP21-3Q3LHN1 58 aa1.34□□□□□ -2.19
USP40-209ENST00000452724 COPS6Q7L5N1 327 aa1.34□□□□□ -2.19
USP40-209ENST00000452724 CCDC124Q96CT7 223 aaKnown RBP1.34□□□□□ -2.19
USP40-209ENST00000452724 AGPAT3Q9NRZ7 376 aa1.34□□□□□ -2.19
USP40-209ENST00000452724 ADAMTS7Q9UKP4 1686 aa1.34□□□□□ -2.19
USP40-209ENST00000452724 CACNA1SQ13698 1873 aa1.34□□□□□ -2.19
USP40-209ENST00000452724 ATG2BQ96BY7 2078 aa1.34□□□□□ -2.19
USP40-209ENST00000452724 SLIT2O94813 1529 aa1.34□□□□□ -2.2
USP40-209ENST00000452724 TRPM6Q9BX84 2022 aa1.33□□□□□ -2.2
USP40-209ENST00000452724 PLXNA3P51805 1871 aa1.33□□□□□ -2.2
USP40-209ENST00000452724 EFCAB9A8MZ26 197 aa1.33□□□□□ -2.2
USP40-209ENST00000452724 GPR171O14626 319 aa1.33□□□□□ -2.2
USP40-209ENST00000452724 SGCEO43556 437 aa1.33□□□□□ -2.2
USP40-209ENST00000452724 NQO2P16083 231 aa1.33□□□□□ -2.2
USP40-209ENST00000452724 HADHBP55084 474 aaKnown RBP1.33□□□□□ -2.2
USP40-209ENST00000452724 STX3Q13277 289 aa1.33□□□□□ -2.2
USP40-209ENST00000452724 TMEM25Q86YD3 366 aa1.33□□□□□ -2.2
USP40-209ENST00000452724 C2orf73Q8N5S3 287 aaPredicted RBP1.33□□□□□ -2.2
USP40-209ENST00000452724 ZNRF2Q8NHG8 242 aa1.33□□□□□ -2.2
USP40-209ENST00000452724 SMDT1Q9H4I9 107 aa1.33□□□□□ -2.2
USP40-209ENST00000452724 TXNL4BQ9NX01 149 aaKnown RBP1.33□□□□□ -2.2
USP40-209ENST00000452724 CHMP5Q9NZZ3 219 aa1.33□□□□□ -2.2
USP40-209ENST00000452724 FBXL3Q9UKT7 428 aa1.33□□□□□ -2.2
USP40-209ENST00000452724 POFUT2Q9Y2G5 429 aa1.33□□□□□ -2.2
USP40-209ENST00000452724 FIS1Q9Y3D6 152 aa1.33□□□□□ -2.2
USP40-209ENST00000452724 PTPRJQ12913 1337 aa1.33□□□□□ -2.2
USP40-209ENST00000452724 USP42Q9H9J4 1324 aaKnown RBP1.33□□□□□ -2.2
USP40-209ENST00000452724 MPDZO75970 2070 aa1.33□□□□□ -2.2
USP40-209ENST00000452724 ZNF638Q14966 1978 aaKnown RBP1.32□□□□□ -2.2
USP40-209ENST00000452724 MUC21A0A0G2JKD1 596 aa1.32□□□□□ -2.2
USP40-209ENST00000452724 MUC21A0A140T8X8 626 aa1.32□□□□□ -2.2
USP40-209ENST00000452724 VPS37CA5D8V6 355 aaPredicted RBP1.32□□□□□ -2.2
USP40-209ENST00000452724 C19orf71A6NCJ1 209 aa1.32□□□□□ -2.2
USP40-209ENST00000452724 CYTH3O43739 400 aa1.32□□□□□ -2.2
USP40-209ENST00000452724 SOD1P00441 154 aa1.32□□□□□ -2.2
USP40-209ENST00000452724 IGHV3-30-3P0DP02 117 aa1.32□□□□□ -2.2
USP40-209ENST00000452724 PPP1CCP36873 323 aaKnown RBP1.32□□□□□ -2.2
USP40-209ENST00000452724 MAGEA6P43360 314 aa1.32□□□□□ -2.2
USP40-209ENST00000452724 SULT1A2P50226 295 aa1.32□□□□□ -2.2
USP40-209ENST00000452724 PRDX4Q13162 271 aa1.32□□□□□ -2.2
USP40-209ENST00000452724 RAB31Q13636 194 aa1.32□□□□□ -2.2
USP40-209ENST00000452724 PDK2Q15119 407 aa1.32□□□□□ -2.2
USP40-209ENST00000452724 CENPWQ5EE01 88 aa1.32□□□□□ -2.2
USP40-209ENST00000452724 CCDC121Q6ZUS5 278 aa1.32□□□□□ -2.2
USP40-209ENST00000452724 VN1R4Q7Z5H5 301 aa1.32□□□□□ -2.2
USP40-209ENST00000452724 MTERF4Q7Z6M4 381 aaKnown RBP1.32□□□□□ -2.2
USP40-209ENST00000452724 YIPF7Q8N8F6 280 aa1.32□□□□□ -2.2
USP40-209ENST00000452724 OR4P4Q8NGL7 312 aa1.32□□□□□ -2.2
USP40-209ENST00000452724 ANGPTL6Q8NI99 470 aa1.32□□□□□ -2.2
USP40-209ENST00000452724 RORBQ92753 470 aa1.32□□□□□ -2.2
USP40-209ENST00000452724 CCDC127Q96BQ5 260 aa1.32□□□□□ -2.2
USP40-209ENST00000452724 C1QTNF6Q9BXI9 259 aa1.32□□□□□ -2.2
USP40-209ENST00000452724 GTSF1LQ9H1H1 148 aa1.32□□□□□ -2.2
USP40-209ENST00000452724 OR52A5Q9H2C5 316 aa1.32□□□□□ -2.2
USP40-209ENST00000452724 METTL17Q9H7H0 456 aaPredicted RBP1.32□□□□□ -2.2
USP40-209ENST00000452724 COMMD9Q9P000 198 aa1.32□□□□□ -2.2
USP40-209ENST00000452724 DOCK10Q96BY6 2186 aa1.32□□□□□ -2.2
USP40-209ENST00000452724 COL4A2P08572 1712 aa1.32□□□□□ -2.2
USP40-209ENST00000452724 ZNF860A6NHJ4 632 aa1.31□□□□□ -2.2
USP40-209ENST00000452724 NEMFO60524 1076 aa1.31□□□□□ -2.2
USP40-209ENST00000452724 GADD45AP24522 165 aa1.31□□□□□ -2.2
USP40-209ENST00000452724 OR4D1Q15615 310 aa1.31□□□□□ -2.2
USP40-209ENST00000452724 TMEM249Q2WGJ8 235 aa1.31□□□□□ -2.2
USP40-209ENST00000452724 MRPL51Q4U2R6 128 aaKnown RBP1.31□□□□□ -2.2
USP40-209ENST00000452724 TIMM23BQ5SRD1 257 aa1.31□□□□□ -2.2
USP40-209ENST00000452724 DOLPP1Q86YN1 238 aa1.31□□□□□ -2.2
USP40-209ENST00000452724 C17orf78Q8N4C9 275 aa1.31□□□□□ -2.2
USP40-209ENST00000452724 MBOAT7Q96N66 472 aa1.31□□□□□ -2.2
USP40-209ENST00000452724 SERPINB11Q96P15 392 aa1.31□□□□□ -2.2
USP40-209ENST00000452724 HBEGFQ99075 208 aa1.31□□□□□ -2.2
USP40-209ENST00000452724 UPK3BQ9BT76 320 aa1.31□□□□□ -2.2
USP40-209ENST00000452724 CHST5Q9GZS9 411 aa1.31□□□□□ -2.2
USP40-209ENST00000452724 TMEM216Q9P0N5 145 aa1.31□□□□□ -2.2
USP40-209ENST00000452724 FBN3Q75N90 2809 aa1.31□□□□□ -2.2
USP40-209ENST00000452724 STRCP1A6NGW2 1772 aa1.31□□□□□ -2.2
USP40-209ENST00000452724 SULT1C2O00338 296 aa1.3□□□□□ -2.2
USP40-209ENST00000452724 PHYHO14832 338 aa1.3□□□□□ -2.2
USP40-209ENST00000452724 TNFAIP8O95379 198 aa1.3□□□□□ -2.2
USP40-209ENST00000452724 SLC35E2BP0CK96 405 aa1.3□□□□□ -2.2
USP40-209ENST00000452724 LIMS3P0CW19 117 aa1.3□□□□□ -2.2
USP40-209ENST00000452724 LIMS4P0CW20 117 aa1.3□□□□□ -2.2
USP40-209ENST00000452724 GZMBP10144 247 aa1.3□□□□□ -2.2
USP40-209ENST00000452724 SLC35A2P78381 396 aa1.3□□□□□ -2.2
USP40-209ENST00000452724 GTF2BQ00403 316 aa1.3□□□□□ -2.2
USP40-209ENST00000452724 TTC33Q6PID6 262 aaPredicted RBP1.3□□□□□ -2.2
USP40-209ENST00000452724 OR11H1Q8NG94 326 aa1.3□□□□□ -2.2
USP40-209ENST00000452724 OR10A6Q8NH74 314 aa1.3□□□□□ -2.2
USP40-209ENST00000452724 OR5K1Q8NHB7 308 aa1.3□□□□□ -2.2
USP40-209ENST00000452724 C16orf78Q8WTQ4 265 aa1.3□□□□□ -2.2
USP40-209ENST00000452724 TMBIM1Q969X1 311 aa1.3□□□□□ -2.2
USP40-209ENST00000452724 TMIGD2Q96BF3 282 aa1.3□□□□□ -2.2
USP40-209ENST00000452724 CFAP53Q96M91 514 aa1.3□□□□□ -2.2
USP40-209ENST00000452724 OR52B2Q96RD2 323 aa1.3□□□□□ -2.2
USP40-209ENST00000452724 MGLLQ99685 303 aa1.3□□□□□ -2.2
USP40-209ENST00000452724 ACBD6Q9BR61 282 aa1.3□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms