RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 GPR157Q5UAW9 335 aa8.26□□□□□ -1.09
COL6A3-204ENST00000392003 ZNF573Q86YE8 665 aa8.26□□□□□ -1.09
COL6A3-204ENST00000392003 LRTM2Q8N967 370 aa8.26□□□□□ -1.09
COL6A3-204ENST00000392003 OR11L1Q8NGX0 322 aa8.26□□□□□ -1.09
COL6A3-204ENST00000392003 MPPED1O15442 326 aa8.26□□□□□ -1.09
COL6A3-204ENST00000392003 ZNHIT1O43257 154 aa8.26□□□□□ -1.09
COL6A3-204ENST00000392003 CDX1P47902 265 aaPredicted RBP8.26□□□□□ -1.09
COL6A3-204ENST00000392003 IL13RA2Q14627 380 aa8.26□□□□□ -1.09
COL6A3-204ENST00000392003 KHDC3LQ587J8 217 aa8.26□□□□□ -1.09
COL6A3-204ENST00000392003 TMEM268Q5VZI3 342 aa8.26□□□□□ -1.09
COL6A3-204ENST00000392003 NUFIP2Q7Z417 695 aaKnown RBP8.26□□□□□ -1.09
COL6A3-204ENST00000392003 VPS25Q9BRG1 176 aa8.26□□□□□ -1.09
COL6A3-204ENST00000392003 EGLN1Q9GZT9 426 aa8.26□□□□□ -1.09
COL6A3-204ENST00000392003 MPC1Q9Y5U8 109 aa8.26□□□□□ -1.09
COL6A3-204ENST00000392003 MUC6Q6W4X9 2439 aa8.25□□□□□ -1.09
COL6A3-204ENST00000392003 C3orf85A0A1B0GTC6 90 aa8.25□□□□□ -1.09
COL6A3-204ENST00000392003 HSPB6O14558 160 aa8.25□□□□□ -1.09
COL6A3-204ENST00000392003 NGFP01138 241 aa8.25□□□□□ -1.09
COL6A3-204ENST00000392003 FAM157CP0CG43 387 aa8.25□□□□□ -1.09
COL6A3-204ENST00000392003 SULT1A2P50226 295 aa8.25□□□□□ -1.09
COL6A3-204ENST00000392003 TNFSF10P50591 281 aa8.25□□□□□ -1.09
COL6A3-204ENST00000392003 GNG3P63215 75 aa8.25□□□□□ -1.09
COL6A3-204ENST00000392003 FAM210BQ96KR6 192 aa8.25□□□□□ -1.09
COL6A3-204ENST00000392003 POM121L2Q96KW2 1035 aa8.25□□□□□ -1.09
COL6A3-204ENST00000392003 RNF2Q99496 336 aa8.25□□□□□ -1.09
COL6A3-204ENST00000392003 RHOFQ9HBH0 211 aa8.25□□□□□ -1.09
COL6A3-204ENST00000392003 CACNA1GO43497 2377 aa8.25□□□□□ -1.09
COL6A3-204ENST00000392003 OR5B21A6NL26 309 aa8.25□□□□□ -1.09
COL6A3-204ENST00000392003 SOD3P08294 240 aa8.25□□□□□ -1.09
COL6A3-204ENST00000392003 SMIM15Q7Z3B0 74 aa8.25□□□□□ -1.09
COL6A3-204ENST00000392003 PIP4P1Q86T03 277 aa8.25□□□□□ -1.09
COL6A3-204ENST00000392003 CMTM1Q8IZ96 169 aa8.25□□□□□ -1.09
COL6A3-204ENST00000392003 HPSE2Q8WWQ2 592 aa8.25□□□□□ -1.09
COL6A3-204ENST00000392003 Q9N2K0 584 aa8.25□□□□□ -1.09
COL6A3-204ENST00000392003 SLC22A20A6NK97 555 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 FABP4P15090 132 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 GNRHRP30968 328 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 KRTCAP3Q53RY4 240 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 SHISA2Q6UWI4 295 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 SMIM8Q96KF7 97 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 C18orf12Q96KH6 178 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 CSTL1Q9H114 145 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 PRSS50Q9UI38 385 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 J3KRW8 73 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 PTBP3O95758 552 aaKnown RBP8.24□□□□□ -1.09
COL6A3-204ENST00000392003 PRH1P02810 166 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 ARG1P05089 322 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 P2RY1P47900 373 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 VAMP2P63027 116 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 PMP22Q01453 160 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 SRSF7Q16629 238 aaKnown RBP eCLIP8.24□□□□□ -1.09
COL6A3-204ENST00000392003 Q6ZRG5 221 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 LINC00596Q86U02 117 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 FAM24BQ8N5W8 94 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 MSI2Q96DH6 328 aaKnown RBP8.24□□□□□ -1.09
COL6A3-204ENST00000392003 BOD1Q96IK1 185 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 LPAR2Q9HBW0 351 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 UQCC1Q9NVA1 299 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 RCL1Q9Y2P8 373 aaKnown RBP8.24□□□□□ -1.09
COL6A3-204ENST00000392003 AMDHD2Q9Y303 409 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 TRDCB7Z8K6 153 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 TSPAN15O95858 294 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 CAV2P51636 162 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 UBE2NP61088 152 aaKnown RBP8.24□□□□□ -1.09
COL6A3-204ENST00000392003 TGFBR3Q03167 851 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 SRSF6Q13247 344 aaKnown RBP8.24□□□□□ -1.09
COL6A3-204ENST00000392003 OR5I1Q13606 314 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 KIAA0141Q14154 515 aaPredicted RBP8.24□□□□□ -1.09
COL6A3-204ENST00000392003 TBC1D28Q2M2D7 210 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 HIKESHIQ53FT3 197 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 BTNL3Q6UXE8 466 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 Q6ZS49 121 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 SLC35G3Q8N808 338 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 ZFP62Q8NB50 900 aaPredicted RBP8.24□□□□□ -1.09
COL6A3-204ENST00000392003 MDS2Q8NDY4 140 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 ZNF552Q9H707 407 aaPredicted RBP8.24□□□□□ -1.09
COL6A3-204ENST00000392003 CDH20Q9HBT6 801 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 MTCH1Q9NZJ7 389 aa8.24□□□□□ -1.09
COL6A3-204ENST00000392003 PIGBOS1A0A0B4J2F0 54 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 M0R143 59 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 SYNGR1O43759 233 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 CDS2O95674 445 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 RPLP1P05386 114 aaKnown RBP8.23□□□□□ -1.09
COL6A3-204ENST00000392003 IRF2P14316 349 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 RAB5AP20339 215 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 IL2RGP31785 369 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 NKX2-1P43699 371 aaPredicted RBP8.23□□□□□ -1.09
COL6A3-204ENST00000392003 BATFQ16520 125 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 FREM1Q5H8C1 2179 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 TBC1D26Q86UD7 250 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 FAM58AQ8N1B3 248 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 OR1K1Q8NGR3 316 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 OR5P3Q8WZ94 311 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 DOCK7Q96N67 2140 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 PARP11Q9NR21 331 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 PRR33A8MZF0 331 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 RNASEK-C17orf49H0YIS7 233 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 HS3ST1O14792 307 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 SCTP09683 121 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 LPAR6P43657 344 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms