RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 AMMECR1Q9Y4X0 333 aaPredicted RBP10.76□□□□□ -0.69
VPS28-202ENST00000377348 TRBV6-6A0A0A6YYG2 114 aa10.75□□□□□ -0.69
VPS28-202ENST00000377348 MFNGO00587 321 aa10.75□□□□□ -0.69
VPS28-202ENST00000377348 TFAP2AP05549 437 aa10.75□□□□□ -0.69
VPS28-202ENST00000377348 PPP1CCP36873 323 aaKnown RBP10.75□□□□□ -0.69
VPS28-202ENST00000377348 CEACAM3P40198 252 aa10.75□□□□□ -0.69
VPS28-202ENST00000377348 ALDH3B2P48448 385 aa10.75□□□□□ -0.69
VPS28-202ENST00000377348 SERPINB10P48595 397 aa10.75□□□□□ -0.69
VPS28-202ENST00000377348 COMPP49747 757 aaPredicted RBP10.75□□□□□ -0.69
VPS28-202ENST00000377348 RAG2P55895 527 aa10.75□□□□□ -0.69
VPS28-202ENST00000377348 FOXL1Q12952 345 aa10.75□□□□□ -0.69
VPS28-202ENST00000377348 DHRS7BQ6IAN0 325 aaPredicted RBP10.75□□□□□ -0.69
VPS28-202ENST00000377348 ZNF554Q86TJ5 538 aa10.75□□□□□ -0.69
VPS28-202ENST00000377348 ZNF439Q8NDP4 499 aa10.75□□□□□ -0.69
VPS28-202ENST00000377348 IL1F10Q8WWZ1 152 aa10.75□□□□□ -0.69
VPS28-202ENST00000377348 TOMM40LQ969M1 308 aa10.75□□□□□ -0.69
VPS28-202ENST00000377348 RPEQ96AT9 228 aa10.75□□□□□ -0.69
VPS28-202ENST00000377348 CREB3L1Q96BA8 519 aa10.75□□□□□ -0.69
VPS28-202ENST00000377348 SLC25A38Q96DW6 304 aa10.75□□□□□ -0.69
VPS28-202ENST00000377348 RIMS4Q9H426 269 aaPredicted RBP10.75□□□□□ -0.69
VPS28-202ENST00000377348 Q9N2K0 584 aa10.75□□□□□ -0.69
VPS28-202ENST00000377348 RAB9BQ9NP90 201 aa10.75□□□□□ -0.69
VPS28-202ENST00000377348 C12orf4Q9NQ89 552 aa10.75□□□□□ -0.69
VPS28-202ENST00000377348 TCF19Q9Y242 345 aa10.75□□□□□ -0.69
VPS28-202ENST00000377348 A6NDX4 124 aa10.74□□□□□ -0.69
VPS28-202ENST00000377348 CD3GP09693 182 aa10.74□□□□□ -0.69
VPS28-202ENST00000377348 REG1BP48304 166 aa10.74□□□□□ -0.69
VPS28-202ENST00000377348 DYNLT3P51808 116 aa10.74□□□□□ -0.69
VPS28-202ENST00000377348 MADCAM1Q13477 382 aa10.74□□□□□ -0.69
VPS28-202ENST00000377348 MORN2Q502X0 79 aa10.74□□□□□ -0.69
VPS28-202ENST00000377348 CT45A1Q5HYN5 189 aa10.74□□□□□ -0.69
VPS28-202ENST00000377348 GPR107Q5VW38 600 aa10.74□□□□□ -0.69
VPS28-202ENST00000377348 Q6ZSV7 163 aa10.74□□□□□ -0.69
VPS28-202ENST00000377348 MOB1BQ7L9L4 216 aa10.74□□□□□ -0.69
VPS28-202ENST00000377348 LINC00311Q8N616 119 aa10.74□□□□□ -0.69
VPS28-202ENST00000377348 CT45A3Q8NHU0 189 aa10.74□□□□□ -0.69
VPS28-202ENST00000377348 MAFIPQ8WZ33 124 aa10.74□□□□□ -0.69
VPS28-202ENST00000377348 GALMQ96C23 342 aa10.74□□□□□ -0.69
VPS28-202ENST00000377348 RHBDL2Q9NX52 303 aa10.74□□□□□ -0.69
VPS28-202ENST00000377348 ABRACLQ9P1F3 81 aa10.74□□□□□ -0.69
VPS28-202ENST00000377348 JPT1Q9UK76 154 aa10.74□□□□□ -0.69
VPS28-202ENST00000377348 GABARAPO95166 117 aa10.73□□□□□ -0.69
VPS28-202ENST00000377348 NDUFA7O95182 113 aa10.73□□□□□ -0.69
VPS28-202ENST00000377348 FCGR3AP08637 254 aa10.73□□□□□ -0.69
VPS28-202ENST00000377348 SCTP09683 121 aa10.73□□□□□ -0.69
VPS28-202ENST00000377348 RPL15P61313 204 aaKnown RBP10.73□□□□□ -0.69
VPS28-202ENST00000377348 HLA-DRB3P79483 266 aa10.73□□□□□ -0.69
VPS28-202ENST00000377348 MRPS15P82914 257 aaKnown RBP10.73□□□□□ -0.69
VPS28-202ENST00000377348 HTD2P86397 168 aa10.73□□□□□ -0.69
VPS28-202ENST00000377348 CTF1Q16619 201 aa10.73□□□□□ -0.69
VPS28-202ENST00000377348 TMEM30BQ3MIR4 351 aa10.73□□□□□ -0.69
VPS28-202ENST00000377348 Q3ZCU0 254 aa10.73□□□□□ -0.69
VPS28-202ENST00000377348 CDNFQ49AH0 187 aa10.73□□□□□ -0.69
VPS28-202ENST00000377348 SLC25A48Q6ZT89 311 aaKnown RBP10.73□□□□□ -0.69
VPS28-202ENST00000377348 GPR141Q7Z602 305 aa10.73□□□□□ -0.69
VPS28-202ENST00000377348 ANKRD13BQ86YJ7 626 aa10.73□□□□□ -0.69
VPS28-202ENST00000377348 IZUMO1Q8IYV9 350 aa10.73□□□□□ -0.69
VPS28-202ENST00000377348 C8orf31Q8N9H6 132 aa10.73□□□□□ -0.69
VPS28-202ENST00000377348 OCSTAMPQ9BR26 566 aa10.73□□□□□ -0.69
VPS28-202ENST00000377348 PARP12Q9H0J9 701 aaKnown RBP10.73□□□□□ -0.69
VPS28-202ENST00000377348 OR1A1Q9P1Q5 309 aa10.73□□□□□ -0.69
VPS28-202ENST00000377348 ZNF230Q9UIE0 474 aaPredicted RBP10.73□□□□□ -0.69
VPS28-202ENST00000377348 ETV7Q9Y603 341 aa10.73□□□□□ -0.69
VPS28-202ENST00000377348 IGKV1-6A0A0C4DH72 117 aa10.72□□□□□ -0.69
VPS28-202ENST00000377348 A0A1W2PPI3 338 aa10.72□□□□□ -0.69
VPS28-202ENST00000377348 TMEM235A6NFC5 223 aa10.72□□□□□ -0.69
VPS28-202ENST00000377348 SERPINE3A8MV23 424 aa10.72□□□□□ -0.69
VPS28-202ENST00000377348 OOSP1A8MZH6 123 aa10.72□□□□□ -0.69
VPS28-202ENST00000377348 HSD17B6O14756 317 aa10.72□□□□□ -0.69
VPS28-202ENST00000377348 TIMM23O14925 209 aa10.72□□□□□ -0.69
VPS28-202ENST00000377348 YPEL1O60688 119 aa10.72□□□□□ -0.69
VPS28-202ENST00000377348 BRS3P32247 399 aa10.72□□□□□ -0.69
VPS28-202ENST00000377348 MNDAP41218 407 aa10.72□□□□□ -0.69
VPS28-202ENST00000377348 SCAND1P57086 179 aa10.72□□□□□ -0.69
VPS28-202ENST00000377348 ARFRP1Q13795 201 aa10.72□□□□□ -0.69
VPS28-202ENST00000377348 DRAM1Q8N682 238 aa10.72□□□□□ -0.69
VPS28-202ENST00000377348 OR4F5Q8NH21 305 aa10.72□□□□□ -0.69
VPS28-202ENST00000377348 OR56B4Q8NH76 319 aa10.72□□□□□ -0.69
VPS28-202ENST00000377348 LINC01006Q8NI28 216 aa10.72□□□□□ -0.69
VPS28-202ENST00000377348 CAPSLQ8WWF8 208 aa10.72□□□□□ -0.69
VPS28-202ENST00000377348 SLC25A46Q96AG3 418 aa10.72□□□□□ -0.69
VPS28-202ENST00000377348 RBMXL1Q96E39 390 aaKnown RBP10.72□□□□□ -0.69
VPS28-202ENST00000377348 YPEL2Q96QA6 119 aa10.72□□□□□ -0.69
VPS28-202ENST00000377348 ABHD14AQ9BUJ0 271 aa10.72□□□□□ -0.69
VPS28-202ENST00000377348 SLC23A1Q9UHI7 598 aa10.72□□□□□ -0.69
VPS28-202ENST00000377348 SPATA2Q9UM82 520 aa10.72□□□□□ -0.69
VPS28-202ENST00000377348 SIGLEC9Q9Y336 463 aa10.72□□□□□ -0.69
VPS28-202ENST00000377348 IGHV3-72A0A0B4J1Y9 119 aa10.71□□□□□ -0.69
VPS28-202ENST00000377348 TRDCB7Z8K6 153 aa10.71□□□□□ -0.69
VPS28-202ENST00000377348 TSPAN9O75954 239 aa10.71□□□□□ -0.69
VPS28-202ENST00000377348 RAB7AP51149 207 aa10.71□□□□□ -0.69
VPS28-202ENST00000377348 ARHGDIBP52566 201 aa10.71□□□□□ -0.69
VPS28-202ENST00000377348 ZNF816Q0VGE8 651 aaPredicted RBP10.71□□□□□ -0.69
VPS28-202ENST00000377348 HERPUD1Q15011 391 aa10.71□□□□□ -0.69
VPS28-202ENST00000377348 ZNF260Q3ZCT1 412 aa10.71□□□□□ -0.69
VPS28-202ENST00000377348 HACD4Q5VWC8 232 aa10.71□□□□□ -0.69
VPS28-202ENST00000377348 CCDC144NLQ6NUI1 221 aa10.71□□□□□ -0.69
VPS28-202ENST00000377348 LIAT1Q6ZQX7 453 aa10.71□□□□□ -0.69
VPS28-202ENST00000377348 MOB3BQ86TA1 216 aa10.71□□□□□ -0.69
VPS28-202ENST00000377348 CROCCP3Q8IVE0 287 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms