RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 PRB2P02812 416 aaPredicted RBP17.16■□□□□ 0.34
CCDC28B-201ENST00000373602 UCHL1P09936 223 aa17.16■□□□□ 0.34
CCDC28B-201ENST00000373602 CD33P20138 364 aa17.16■□□□□ 0.34
CCDC28B-201ENST00000373602 MYF6P23409 242 aa17.16■□□□□ 0.34
CCDC28B-201ENST00000373602 KHDC1LQ5JSQ8 128 aa17.16■□□□□ 0.34
CCDC28B-201ENST00000373602 OR10K2Q6IF99 312 aa17.16■□□□□ 0.34
CCDC28B-201ENST00000373602 REC114Q7Z4M0 266 aa17.16■□□□□ 0.34
CCDC28B-201ENST00000373602 SLC35E3Q7Z769 313 aa17.16■□□□□ 0.34
CCDC28B-201ENST00000373602 ZNF329Q86UD4 541 aa17.16■□□□□ 0.34
CCDC28B-201ENST00000373602 TGIF2LXQ8IUE1 241 aa17.16■□□□□ 0.34
CCDC28B-201ENST00000373602 UFD1Q92890 307 aa17.16■□□□□ 0.34
CCDC28B-201ENST00000373602 NOL4LQ96MY1 436 aaPredicted RBP17.16■□□□□ 0.34
CCDC28B-201ENST00000373602 OR2S2Q9NQN1 319 aa17.16■□□□□ 0.34
CCDC28B-201ENST00000373602 KCNIP1Q9NZI2 227 aa17.16■□□□□ 0.34
CCDC28B-201ENST00000373602 SERPINE3A8MV23 424 aa17.15■□□□□ 0.34
CCDC28B-201ENST00000373602 PF4P02776 101 aa17.15■□□□□ 0.34
CCDC28B-201ENST00000373602 CHATP28329 748 aa17.15■□□□□ 0.34
CCDC28B-201ENST00000373602 RPS27AP62979 156 aaKnown RBP17.15■□□□□ 0.34
CCDC28B-201ENST00000373602 MORN2Q502X0 79 aa17.15■□□□□ 0.34
CCDC28B-201ENST00000373602 NKAPLQ5M9Q1 402 aa17.15■□□□□ 0.34
CCDC28B-201ENST00000373602 LIPKQ5VXJ0 399 aa17.15■□□□□ 0.34
CCDC28B-201ENST00000373602 PHF21AQ96BD5 680 aa17.15■□□□□ 0.34
CCDC28B-201ENST00000373602 NEDD4LQ96PU5 975 aa17.15■□□□□ 0.34
CCDC28B-201ENST00000373602 ANKRD60Q9BZ19 345 aa17.15■□□□□ 0.34
CCDC28B-201ENST00000373602 NCBP2LA6PVI3 153 aaKnown RBP17.14■□□□□ 0.33
CCDC28B-201ENST00000373602 ZNF736B4DX44 427 aaPredicted RBP17.14■□□□□ 0.33
CCDC28B-201ENST00000373602 SLC22A1O15245 554 aa17.14■□□□□ 0.33
CCDC28B-201ENST00000373602 MOSP00540 346 aa17.14■□□□□ 0.33
CCDC28B-201ENST00000373602 HTR2CP28335 458 aa17.14■□□□□ 0.33
CCDC28B-201ENST00000373602 TPBGQ13641 420 aa17.14■□□□□ 0.33
CCDC28B-201ENST00000373602 Q8N9W7 124 aa17.14■□□□□ 0.33
CCDC28B-201ENST00000373602 KCNG3Q8TAE7 436 aa17.14■□□□□ 0.33
CCDC28B-201ENST00000373602 SULT4A1Q9BR01 284 aa17.14■□□□□ 0.33
CCDC28B-201ENST00000373602 TM2D1Q9BX74 207 aa17.14■□□□□ 0.33
CCDC28B-201ENST00000373602 TMEM59Q9BXS4 323 aa17.14■□□□□ 0.33
CCDC28B-201ENST00000373602 PLSCR3Q9NRY6 295 aa17.14■□□□□ 0.33
CCDC28B-201ENST00000373602 LIN7CQ9NUP9 197 aaKnown RBP17.14■□□□□ 0.33
CCDC28B-201ENST00000373602 NECAP2Q9NVZ3 263 aa17.14■□□□□ 0.33
CCDC28B-201ENST00000373602 TMEM14DPA8MWL7 114 aa17.13■□□□□ 0.33
CCDC28B-201ENST00000373602 RGS10O43665 173 aa17.13■□□□□ 0.33
CCDC28B-201ENST00000373602 IGLL1P15814 213 aa17.13■□□□□ 0.33
CCDC28B-201ENST00000373602 QRFPP83859 136 aa17.13■□□□□ 0.33
CCDC28B-201ENST00000373602 HTD2P86397 168 aa17.13■□□□□ 0.33
CCDC28B-201ENST00000373602 UNC119Q13432 240 aa17.13■□□□□ 0.33
CCDC28B-201ENST00000373602 TMEM91Q6ZNR0 172 aa17.13■□□□□ 0.33
CCDC28B-201ENST00000373602 C5orf24Q7Z6I8 188 aa17.13■□□□□ 0.33
CCDC28B-201ENST00000373602 FOXRED2Q8IWF2 684 aa17.13■□□□□ 0.33
CCDC28B-201ENST00000373602 STPG2Q8N412 459 aa17.13■□□□□ 0.33
CCDC28B-201ENST00000373602 OR8H1Q8NGG4 311 aa17.13■□□□□ 0.33
CCDC28B-201ENST00000373602 OR52L2PQ8NGH6 319 aa17.13■□□□□ 0.33
CCDC28B-201ENST00000373602 OR6M1Q8NGM8 313 aa17.13■□□□□ 0.33
CCDC28B-201ENST00000373602 TMEM203Q969S6 136 aa17.13■□□□□ 0.33
CCDC28B-201ENST00000373602 ABCG5Q9H222 651 aa17.13■□□□□ 0.33
CCDC28B-201ENST00000373602 ISYNA1Q9NPH2 558 aa17.13■□□□□ 0.33
CCDC28B-201ENST00000373602 LINC00527Q9UJ94 153 aa17.13■□□□□ 0.33
CCDC28B-201ENST00000373602 JPT1Q9UK76 154 aa17.13■□□□□ 0.33
CCDC28B-201ENST00000373602 LINC01548A6NM66 108 aa17.12■□□□□ 0.33
CCDC28B-201ENST00000373602 LANCL1O43813 399 aa17.12■□□□□ 0.33
CCDC28B-201ENST00000373602 BPNT1O95861 308 aa17.12■□□□□ 0.33
CCDC28B-201ENST00000373602 GPR12P47775 334 aa17.12■□□□□ 0.33
CCDC28B-201ENST00000373602 RPL23AP62750 156 aaKnown RBP17.12■□□□□ 0.33
CCDC28B-201ENST00000373602 SLC35B1P78383 322 aa17.12■□□□□ 0.33
CCDC28B-201ENST00000373602 GNMTQ14749 295 aa17.12■□□□□ 0.33
CCDC28B-201ENST00000373602 C6orf201Q7Z4U5 140 aa17.12■□□□□ 0.33
CCDC28B-201ENST00000373602 COMMD1Q8N668 190 aa17.12■□□□□ 0.33
CCDC28B-201ENST00000373602 S1PR3Q99500 378 aa17.12■□□□□ 0.33
CCDC28B-201ENST00000373602 NICN1Q9BSH3 213 aa17.12■□□□□ 0.33
CCDC28B-201ENST00000373602 FAAP24Q9BTP7 215 aa17.12■□□□□ 0.33
CCDC28B-201ENST00000373602 KCNK15Q9H427 330 aa17.12■□□□□ 0.33
CCDC28B-201ENST00000373602 LRRC42Q9Y546 428 aa17.12■□□□□ 0.33
CCDC28B-201ENST00000373602 YPEL1O60688 119 aa17.11■□□□□ 0.33
CCDC28B-201ENST00000373602 HSMCR30P0CW71 290 aa17.11■□□□□ 0.33
CCDC28B-201ENST00000373602 CRHBPP24387 322 aa17.11■□□□□ 0.33
CCDC28B-201ENST00000373602 RPS25P62851 125 aaKnown RBP17.11■□□□□ 0.33
CCDC28B-201ENST00000373602 MLLT11Q13015 90 aaPredicted RBP17.11■□□□□ 0.33
CCDC28B-201ENST00000373602 TRAM1Q15629 374 aa17.11■□□□□ 0.33
CCDC28B-201ENST00000373602 HMGN3Q15651 99 aa17.11■□□□□ 0.33
CCDC28B-201ENST00000373602 LY6G6FQ5SQ64 297 aa17.11■□□□□ 0.33
CCDC28B-201ENST00000373602 FOXB2Q5VYV0 432 aa17.11■□□□□ 0.33
CCDC28B-201ENST00000373602 Q6ZPA2 131 aa17.11■□□□□ 0.33
CCDC28B-201ENST00000373602 YPEL2Q96QA6 119 aa17.11■□□□□ 0.33
CCDC28B-201ENST00000373602 ABHD14AQ9BUJ0 271 aa17.11■□□□□ 0.33
CCDC28B-201ENST00000373602 ZFP57Q9NU63 452 aa17.11■□□□□ 0.33
CCDC28B-201ENST00000373602 AP4M1O00189 453 aa17.1■□□□□ 0.33
CCDC28B-201ENST00000373602 PPP1CCP36873 323 aaKnown RBP17.1■□□□□ 0.33
CCDC28B-201ENST00000373602 PRSS48Q7RTY5 328 aa17.1■□□□□ 0.33
CCDC28B-201ENST00000373602 ODF3L1Q8IXM7 274 aa17.1■□□□□ 0.33
CCDC28B-201ENST00000373602 GALMQ96C23 342 aa17.1■□□□□ 0.33
CCDC28B-201ENST00000373602 GFI1Q99684 422 aa17.1■□□□□ 0.33
CCDC28B-201ENST00000373602 VCX3BQ9H321 246 aa17.1■□□□□ 0.33
CCDC28B-201ENST00000373602 A0A0A6YYD4 124 aa17.09■□□□□ 0.33
CCDC28B-201ENST00000373602 RGS11O94810 467 aa17.09■□□□□ 0.33
CCDC28B-201ENST00000373602 NAPSAO96009 420 aa17.09■□□□□ 0.33
CCDC28B-201ENST00000373602 CPEP16870 476 aa17.09■□□□□ 0.33
CCDC28B-201ENST00000373602 PSMA1P25786 263 aaKnown RBP17.09■□□□□ 0.33
CCDC28B-201ENST00000373602 BLVRBP30043 206 aaPredicted RBP17.09■□□□□ 0.33
CCDC28B-201ENST00000373602 F2RL1P55085 397 aa17.09■□□□□ 0.33
CCDC28B-201ENST00000373602 LSAMPQ13449 338 aa17.09■□□□□ 0.33
CCDC28B-201ENST00000373602 ZNF880Q6PDB4 577 aa17.09■□□□□ 0.33
CCDC28B-201ENST00000373602 ETV3LQ6ZN32 361 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms