RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 AHDC1Q5TGY3 1603 aaPredicted RBP11.73□□□□□ -0.53
COL6A3-202ENST00000347401 FAM221AA4D161 298 aa11.73□□□□□ -0.53
COL6A3-202ENST00000347401 RBFOX2O43251 390 aaKnown RBP eCLIP11.73□□□□□ -0.53
COL6A3-202ENST00000347401 TMEM108Q6UXF1 575 aa11.73□□□□□ -0.53
COL6A3-202ENST00000347401 KLF3P57682 345 aaPredicted RBP11.73□□□□□ -0.53
COL6A3-202ENST00000347401 CALHM1Q8IU99 346 aa11.73□□□□□ -0.53
COL6A3-202ENST00000347401 IGF2P01344 180 aa11.72□□□□□ -0.53
COL6A3-202ENST00000347401 GABRG2P18507 467 aa11.72□□□□□ -0.53
COL6A3-202ENST00000347401 NMUP48645 174 aa11.72□□□□□ -0.53
COL6A3-202ENST00000347401 Q6ZNB5 142 aa11.72□□□□□ -0.53
COL6A3-202ENST00000347401 SLC25A40Q8TBP6 338 aa11.72□□□□□ -0.53
COL6A3-202ENST00000347401 SPRY1O43609 319 aaPredicted RBP11.72□□□□□ -0.53
COL6A3-202ENST00000347401 SMIM13P0DJ93 91 aa11.72□□□□□ -0.53
COL6A3-202ENST00000347401 POLR2GP62487 172 aaKnown RBP eCLIP11.72□□□□□ -0.53
COL6A3-202ENST00000347401 GGACTQ9BVM4 153 aa11.72□□□□□ -0.53
COL6A3-202ENST00000347401 CREBBPQ92793 2442 aa11.72□□□□□ -0.53
COL6A3-202ENST00000347401 SBK3P0C264 359 aa11.72□□□□□ -0.53
COL6A3-202ENST00000347401 RPS11P62280 158 aaKnown RBP eCLIP11.72□□□□□ -0.53
COL6A3-202ENST00000347401 PRICKLE4Q2TBC4 344 aa11.72□□□□□ -0.53
COL6A3-202ENST00000347401 LINC00696Q6ZRV3 163 aa11.72□□□□□ -0.53
COL6A3-202ENST00000347401 ASB16Q96NS5 453 aa11.72□□□□□ -0.53
COL6A3-202ENST00000347401 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.72□□□□□ -0.53
COL6A3-202ENST00000347401 BEND2Q8NDZ0 799 aa11.72□□□□□ -0.53
COL6A3-202ENST00000347401 NUDT10Q8NFP7 164 aa11.72□□□□□ -0.53
COL6A3-202ENST00000347401 OR2Z1Q8NG97 314 aa11.72□□□□□ -0.53
COL6A3-202ENST00000347401 NUDT11Q96G61 164 aa11.72□□□□□ -0.53
COL6A3-202ENST00000347401 KCNE3Q9Y6H6 103 aa11.72□□□□□ -0.53
COL6A3-202ENST00000347401 GNG7O60262 68 aa11.72□□□□□ -0.53
COL6A3-202ENST00000347401 SLC35B1P78383 322 aa11.72□□□□□ -0.53
COL6A3-202ENST00000347401 LSM10Q969L4 123 aaKnown RBP11.72□□□□□ -0.53
COL6A3-202ENST00000347401 MOB4Q9Y3A3 225 aa11.72□□□□□ -0.53
COL6A3-202ENST00000347401 FZD5Q13467 585 aa11.72□□□□□ -0.53
COL6A3-202ENST00000347401 RHNO1Q9BSD3 238 aa11.72□□□□□ -0.53
COL6A3-202ENST00000347401 PSMG3Q9BT73 122 aaPredicted RBP11.72□□□□□ -0.53
COL6A3-202ENST00000347401 HES7Q9BYE0 225 aa11.72□□□□□ -0.53
COL6A3-202ENST00000347401 MAP1LC3AQ9H492 121 aa11.72□□□□□ -0.53
COL6A3-202ENST00000347401 TANC2Q9HCD6 1990 aa11.72□□□□□ -0.53
COL6A3-202ENST00000347401 A0A0U1RQS6 177 aa11.72□□□□□ -0.53
COL6A3-202ENST00000347401 NHLRC3Q5JS37 347 aa11.72□□□□□ -0.53
COL6A3-202ENST00000347401 MRPL52Q86TS9 123 aaKnown RBP11.72□□□□□ -0.53
COL6A3-202ENST00000347401 MIXL1Q9H2W2 232 aa11.72□□□□□ -0.53
COL6A3-202ENST00000347401 K7ESM1 405 aa11.71□□□□□ -0.53
COL6A3-202ENST00000347401 DAOP14920 347 aa11.71□□□□□ -0.53
COL6A3-202ENST00000347401 HMGA1P17096 107 aaKnown RBP11.71□□□□□ -0.53
COL6A3-202ENST00000347401 ZNF519Q8TB69 540 aa11.71□□□□□ -0.53
COL6A3-202ENST00000347401 FBLIM1Q8WUP2 373 aa11.71□□□□□ -0.53
COL6A3-202ENST00000347401 PRELID3AQ96N28 172 aa11.71□□□□□ -0.53
COL6A3-202ENST00000347401 ANAPC1Q9H1A4 1944 aa11.71□□□□□ -0.53
COL6A3-202ENST00000347401 PLXNA3P51805 1871 aa11.71□□□□□ -0.53
COL6A3-202ENST00000347401 C17orf51A8MQB3 221 aa11.71□□□□□ -0.53
COL6A3-202ENST00000347401 NPIPB9F8W1W9 429 aa11.71□□□□□ -0.53
COL6A3-202ENST00000347401 C8orf82Q6P1X6 216 aaPredicted RBP11.71□□□□□ -0.53
COL6A3-202ENST00000347401 ALKBH3Q96Q83 286 aaPredicted RBP11.71□□□□□ -0.53
COL6A3-202ENST00000347401 M0R1B8 84 aa11.71□□□□□ -0.53
COL6A3-202ENST00000347401 IBA57Q5T440 356 aaKnown RBP11.71□□□□□ -0.53
COL6A3-202ENST00000347401 LINC01465Q8N7H1 131 aa11.71□□□□□ -0.53
COL6A3-202ENST00000347401 GALNT14Q96FL9 552 aa11.71□□□□□ -0.53
COL6A3-202ENST00000347401 FGF22Q9HCT0 170 aa11.71□□□□□ -0.53
COL6A3-202ENST00000347401 KCNE5Q9UJ90 142 aa11.71□□□□□ -0.53
COL6A3-202ENST00000347401 COL24A1Q17RW2 1714 aa11.71□□□□□ -0.53
COL6A3-202ENST00000347401 RAB29O14966 203 aa11.71□□□□□ -0.53
COL6A3-202ENST00000347401 PMELP40967 661 aa11.71□□□□□ -0.53
COL6A3-202ENST00000347401 CA7P43166 264 aa11.71□□□□□ -0.53
COL6A3-202ENST00000347401 KIAA0040Q15053 153 aa11.71□□□□□ -0.53
COL6A3-202ENST00000347401 RAB1BQ9H0U4 201 aa11.71□□□□□ -0.53
COL6A3-202ENST00000347401 IL4P05112 153 aa11.71□□□□□ -0.54
COL6A3-202ENST00000347401 OR4P4Q8NGL7 312 aa11.71□□□□□ -0.54
COL6A3-202ENST00000347401 LTB4R2Q9NPC1 389 aa11.71□□□□□ -0.54
COL6A3-202ENST00000347401 MMP17Q9ULZ9 603 aa11.71□□□□□ -0.54
COL6A3-202ENST00000347401 PLXND1Q9Y4D7 1925 aa11.71□□□□□ -0.54
COL6A3-202ENST00000347401 SPINK4O60575 86 aa11.71□□□□□ -0.54
COL6A3-202ENST00000347401 S1PR2O95136 353 aa11.71□□□□□ -0.54
COL6A3-202ENST00000347401 SFXN3Q9BWM7 321 aa11.71□□□□□ -0.54
COL6A3-202ENST00000347401 TUBA4BQ9H853 241 aa11.71□□□□□ -0.54
COL6A3-202ENST00000347401 ZMIZ1Q9ULJ6 1067 aa11.71□□□□□ -0.54
COL6A3-202ENST00000347401 CCL26Q9Y258 94 aa11.71□□□□□ -0.54
COL6A3-202ENST00000347401 A0A1W2PNR3 127 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 CYR61O00622 381 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 DNLZQ5SXM8 178 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 MS4A3Q96HJ5 214 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 ISG15P05161 165 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 MUC1P15941 1255 aaPredicted RBP11.7□□□□□ -0.54
COL6A3-202ENST00000347401 SRD5A2P31213 254 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 TMEM50BP56557 158 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 NIT1Q86X76 327 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 SPANXDQ9BXN6 97 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 MFRPQ9BY79 579 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 COL5A3P25940 1745 aaPredicted RBP11.7□□□□□ -0.54
COL6A3-202ENST00000347401 NHSL1Q5SYE7 1610 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 A0A096LPE4 126 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 A0A1W2PPZ6 126 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 ZNF735P0CB33 412 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 FAM157BP0CG42 384 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 RAE1P78406 368 aaKnown RBP11.7□□□□□ -0.54
COL6A3-202ENST00000347401 OR8I2Q8N0Y5 310 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 OR8B3Q8NGG8 313 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 NRSN2Q9GZP1 204 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 MRM2Q9UI43 246 aaKnown RBP11.7□□□□□ -0.54
COL6A3-202ENST00000347401 A0A1B0GV90 55 aa11.7□□□□□ -0.54
COL6A3-202ENST00000347401 ORM2P19652 201 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms