RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 OR4K15Q8NH41 348 aa12.73□□□□□ -0.37
CLN3-201ENST00000333496 OR9G1Q8NH87 305 aa12.73□□□□□ -0.37
CLN3-201ENST00000333496 UBALD1Q8TB05 177 aa12.73□□□□□ -0.37
CLN3-201ENST00000333496 SDHCQ99643 169 aaPredicted RBP12.73□□□□□ -0.37
CLN3-201ENST00000333496 NICN1Q9BSH3 213 aa12.73□□□□□ -0.37
CLN3-201ENST00000333496 TM2D1Q9BX74 207 aa12.73□□□□□ -0.37
CLN3-201ENST00000333496 TMEM59Q9BXS4 323 aa12.73□□□□□ -0.37
CLN3-201ENST00000333496 PSG11Q9UQ72 335 aa12.73□□□□□ -0.37
CLN3-201ENST00000333496 RNF114Q9Y508 228 aa12.73□□□□□ -0.37
CLN3-201ENST00000333496 CMYA5Q8N3K9 4069 aa12.73□□□□□ -0.37
CLN3-201ENST00000333496 UBE2QL1A1L167 161 aa12.73□□□□□ -0.37
CLN3-201ENST00000333496 A6NDX4 124 aa12.73□□□□□ -0.37
CLN3-201ENST00000333496 J3QR06 171 aa12.73□□□□□ -0.37
CLN3-201ENST00000333496 TOR1AO14656 332 aa12.73□□□□□ -0.37
CLN3-201ENST00000333496 PDCD6O75340 191 aa12.73□□□□□ -0.37
CLN3-201ENST00000333496 GLAP06280 429 aa12.73□□□□□ -0.37
CLN3-201ENST00000333496 MYL9P24844 172 aa12.73□□□□□ -0.37
CLN3-201ENST00000333496 CHATP28329 748 aa12.73□□□□□ -0.37
CLN3-201ENST00000333496 PROK1P58294 105 aa12.73□□□□□ -0.37
CLN3-201ENST00000333496 KRTAP10-3P60369 221 aa12.73□□□□□ -0.37
CLN3-201ENST00000333496 P2RY14Q15391 338 aa12.73□□□□□ -0.37
CLN3-201ENST00000333496 FAM53AQ6NSI3 398 aaPredicted RBP12.73□□□□□ -0.37
CLN3-201ENST00000333496 KCNG3Q8TAE7 436 aa12.73□□□□□ -0.37
CLN3-201ENST00000333496 ARL11Q969Q4 196 aa12.73□□□□□ -0.37
CLN3-201ENST00000333496 SRRQ9GZT4 340 aa12.73□□□□□ -0.37
CLN3-201ENST00000333496 MMP28Q9H239 520 aa12.73□□□□□ -0.37
CLN3-201ENST00000333496 A0A0A6YYD4 124 aa12.72□□□□□ -0.37
CLN3-201ENST00000333496 LEUTXA8MZ59 168 aa12.72□□□□□ -0.37
CLN3-201ENST00000333496 ORC5O43913 435 aa12.72□□□□□ -0.37
CLN3-201ENST00000333496 BPNT1O95861 308 aa12.72□□□□□ -0.37
CLN3-201ENST00000333496 PRRX1P54821 245 aa12.72□□□□□ -0.37
CLN3-201ENST00000333496 LOXL3P58215 753 aa12.72□□□□□ -0.37
CLN3-201ENST00000333496 LIAT1Q6ZQX7 453 aa12.72□□□□□ -0.37
CLN3-201ENST00000333496 TMEM219Q86XT9 240 aa12.72□□□□□ -0.37
CLN3-201ENST00000333496 LAX1Q8IWV1 398 aa12.72□□□□□ -0.37
CLN3-201ENST00000333496 SULT4A1Q9BR01 284 aa12.72□□□□□ -0.37
CLN3-201ENST00000333496 V9GY05 133 aa12.72□□□□□ -0.37
CLN3-201ENST00000333496 TRAV1-2A0A0B4J238 106 aa12.71□□□□□ -0.37
CLN3-201ENST00000333496 SMIM30A4D0T7 59 aa12.71□□□□□ -0.37
CLN3-201ENST00000333496 C12orf77C9JDV5 145 aa12.71□□□□□ -0.37
CLN3-201ENST00000333496 ARSBP15848 533 aa12.71□□□□□ -0.37
CLN3-201ENST00000333496 RCC1P18754 421 aaPredicted RBP12.71□□□□□ -0.37
CLN3-201ENST00000333496 CLDN12P56749 244 aa12.71□□□□□ -0.37
CLN3-201ENST00000333496 FBLN7Q53RD9 439 aa12.71□□□□□ -0.37
CLN3-201ENST00000333496 TPTE2P1Q5T6R2 138 aa12.71□□□□□ -0.37
CLN3-201ENST00000333496 TPRA1Q86W33 373 aa12.71□□□□□ -0.37
CLN3-201ENST00000333496 GDPD1Q8N9F7 314 aa12.71□□□□□ -0.37
CLN3-201ENST00000333496 LPAR5Q9H1C0 372 aa12.71□□□□□ -0.37
CLN3-201ENST00000333496 RAB18Q9NP72 206 aa12.71□□□□□ -0.37
CLN3-201ENST00000333496 TRAPPC2LQ9UL33 140 aa12.71□□□□□ -0.37
CLN3-201ENST00000333496 FBN3Q75N90 2809 aa12.71□□□□□ -0.38
CLN3-201ENST00000333496 F2RL2O00254 374 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 CA11O75493 328 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 SPNP16150 400 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 CD24P25063 80 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 GNG10P50151 68 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 OR10A3P58181 314 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 CD300CQ08708 224 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 DIAPH2-AS1Q14236 149 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 ZNF79Q15937 498 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 NKAPLQ5M9Q1 402 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 OR2W3Q7Z3T1 314 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 C6orf201Q7Z4U5 140 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 C5orf24Q7Z6I8 188 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 OR51D1Q8NGF3 324 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 OR52M1Q8NGK5 317 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 MRPL30Q8TCC3 161 aaKnown RBP12.7□□□□□ -0.38
CLN3-201ENST00000333496 CREB3L1Q96BA8 519 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 FAAP24Q9BTP7 215 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 MBNL3Q9NUK0 354 aaKnown RBP12.7□□□□□ -0.38
CLN3-201ENST00000333496 FBLN5Q9UBX5 448 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 TBC1D24Q9ULP9 559 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 SIGLEC9Q9Y336 463 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 IGHV3-43A0A0B4J1X8 118 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 A0A1W2PPE3 182 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 H3BUI4 141 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 LDLRAD4O15165 306 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 SOCS1O15524 211 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 IGHV3-43DP0DP04 118 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 IL7P13232 177 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 PTBP1P26599 531 aaKnown RBP eCLIP12.7□□□□□ -0.38
CLN3-201ENST00000333496 KIR2DS4P43632 304 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 RAB11BQ15907 218 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 C2orf76Q3KRA6 126 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 HES5Q5TA89 166 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 FAM89BQ8N5H3 189 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 FAM3DQ96BQ1 224 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 NEDD4LQ96PU5 975 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 CITED1Q99966 193 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 RANBP3Q9H6Z4 567 aaPredicted RBP12.7□□□□□ -0.38
CLN3-201ENST00000333496 GFOD1Q9NXC2 390 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 PITPNC1Q9UKF7 332 aa12.7□□□□□ -0.38
CLN3-201ENST00000333496 FOXI3A8MTJ6 420 aaPredicted RBP12.69□□□□□ -0.38
CLN3-201ENST00000333496 SDCBPO00560 298 aaPredicted RBP12.69□□□□□ -0.38
CLN3-201ENST00000333496 HBZP02008 142 aa12.69□□□□□ -0.38
CLN3-201ENST00000333496 BLVRBP30043 206 aaPredicted RBP12.69□□□□□ -0.38
CLN3-201ENST00000333496 CEACAM3P40198 252 aa12.69□□□□□ -0.38
CLN3-201ENST00000333496 PLA2G7Q13093 441 aa12.69□□□□□ -0.38
CLN3-201ENST00000333496 ASAH1Q13510 395 aa12.69□□□□□ -0.38
CLN3-201ENST00000333496 FAM131AQ6UXB0 335 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms