RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 OR4F17Q8NGA8 305 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 OR10W1Q8NGF6 305 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 SPACA5Q96QH8 159 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 RAB40CQ96S21 281 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 TLNRD1Q9H1K6 362 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 RAXQ9Y2V3 346 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 SCN8AQ9UQD0 1980 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 CRYAAP02489 173 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 HIST1H1BP16401 226 aaKnown RBP5.63□□□□□ -1.51
VPS35-201ENST00000299138 LGALS3P17931 250 aaKnown RBP5.63□□□□□ -1.51
VPS35-201ENST00000299138 BRS3P32247 399 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 SLC37A1P57057 533 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 PRDX4Q13162 271 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 STXBP6Q8NFX7 210 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 OR2Z1Q8NG97 314 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 OR4B1Q8NGF8 309 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 SPCS1Q9Y6A9 102 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 C17orf105B2RV13 164 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 PPP1R17O96001 155 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 GDF1P27539 372 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 CDKN2AP42771 156 aaKnown RBP5.63□□□□□ -1.51
VPS35-201ENST00000299138 KIR3DL2P43630 455 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 SERF2P84101 59 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 TM4SF20Q53R12 229 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 C19orf54Q5BKX5 351 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 TMEM255AQ5JRV8 349 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 SFTA2Q6UW10 78 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 ZNF562Q6V9R5 426 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 BHLHA15Q7RTS1 189 aaPredicted RBP5.63□□□□□ -1.51
VPS35-201ENST00000299138 C16orf82Q7Z2V1 217 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 FNDC4Q9H6D8 234 aaPredicted RBP5.63□□□□□ -1.51
VPS35-201ENST00000299138 IGLV1-36A0A0B4J1U3 117 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 P01737 135 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 MC5RP33032 325 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 C1orf61Q13536 156 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 HIKESHIQ53FT3 197 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 H1FOOQ8IZA3 346 aaPredicted RBP5.62□□□□□ -1.51
VPS35-201ENST00000299138 FAM89BQ8N5H3 189 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 OR5C1Q8NGR4 320 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 GTF3AQ92664 365 aaKnown RBP5.62□□□□□ -1.51
VPS35-201ENST00000299138 TSPAN32Q96QS1 320 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 VN1R1Q9GZP7 353 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 JKAMPQ9P055 326 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 HDGFL3Q9Y3E1 203 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 OR2W1Q9Y3N9 320 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 TRGC2P03986 189 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 CCL1P22362 96 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 ZFAND6Q6FIF0 208 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 LINC00696Q6ZRV3 163 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 OR52N4Q8NGI2 321 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 ZDHHC16Q969W1 377 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 ZNF346Q9UL40 294 aaKnown RBP5.62□□□□□ -1.51
VPS35-201ENST00000299138 SPINT1O43278 529 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 OPRK1P41145 380 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 KIR2DL1P43626 348 aaPredicted RBP5.62□□□□□ -1.51
VPS35-201ENST00000299138 KIR2DL2P43627 348 aaPredicted RBP5.62□□□□□ -1.51
VPS35-201ENST00000299138 CLDN15P56746 228 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 RND3P61587 244 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 MEF2CQ06413 473 aaPredicted RBP5.62□□□□□ -1.51
VPS35-201ENST00000299138 LDLRAD2Q5SZI1 272 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 LHFPL1Q86WI0 220 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 GJC3Q8NFK1 279 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 OR10S1Q8NGN2 331 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 OR10G9Q8NGN4 311 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 OR10G7Q8NGN6 311 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 NEIL1Q96FI4 390 aaPredicted RBP5.62□□□□□ -1.51
VPS35-201ENST00000299138 ADOQ96SZ5 270 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 TMEM147Q9BVK8 224 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 MBNL1Q9NR56 388 aaKnown RBP5.62□□□□□ -1.51
VPS35-201ENST00000299138 WSB2Q9NYS7 404 aaPredicted RBP5.62□□□□□ -1.51
VPS35-201ENST00000299138 A0A0U1RQV5 110 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 IDSB3KWA1 339 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 RBFOX2O43251 390 aaKnown RBP eCLIP5.62□□□□□ -1.518e-9■□□□□ 10.2
VPS35-201ENST00000299138 IGHV4-39P01824 125 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 GNB2P62879 340 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 LCN2P80188 198 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 FZD2Q14332 565 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 SPNS2Q8IVW8 549 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 VAX2Q9UIW0 290 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 A0A0A6YYC8 382 aaPredicted RBP5.62□□□□□ -1.51
VPS35-201ENST00000299138 TRAV8-4A0A0B4J246 113 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 H3BQ15 152 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 I3L1I5 382 aaPredicted RBP5.62□□□□□ -1.51
VPS35-201ENST00000299138 MRPL33O75394 65 aaKnown RBP5.62□□□□□ -1.51
VPS35-201ENST00000299138 PRKRAO75569 313 aaKnown RBP5.62□□□□□ -1.51
VPS35-201ENST00000299138 PRB4P10163 310 aaPredicted RBP5.62□□□□□ -1.51
VPS35-201ENST00000299138 INSL4Q14641 139 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 ZNF542PQ5EBM4 170 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 FNDC7Q5VTL7 733 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 FAM219BQ5XKK7 198 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 OR2C3Q8N628 320 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 SLC25A28Q96A46 364 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 GSN-AS1Q9NRJ2 163 aa5.62□□□□□ -1.51
VPS35-201ENST00000299138 IGKV1-8A0A0C4DH67 115 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 A0A1W2PPC4 97 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 TMEM250H0YL14 139 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 CSRP1P21291 193 aaKnown RBP5.61□□□□□ -1.51
VPS35-201ENST00000299138 UBE2L3P68036 154 aaKnown RBP5.61□□□□□ -1.51
VPS35-201ENST00000299138 ZNF415Q09FC8 603 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 HERPUD1Q15011 391 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms