RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 MRPL54Q6P161 138 aaKnown RBP5.37□□□□□ -1.55
VPS13D-201ENST00000011700 SNX22Q96L94 193 aa5.37□□□□□ -1.55
VPS13D-201ENST00000011700 PPYP01298 95 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 C19orf54Q5BKX5 351 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 RIPPLY2Q5TAB7 128 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 RDH5Q92781 318 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 TREM2Q9NZC2 230 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 UFC1Q9Y3C8 167 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 NOTCH4Q99466 2003 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 HIST1H1AQ02539 215 aaPredicted RBP5.36□□□□□ -1.55
VPS13D-201ENST00000011700 GGTLC2Q14390 218 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 ZNF146Q15072 292 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 OR10J6PQ8NGY7 276 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 MBD3L1Q8WWY6 194 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 RAXQ9Y2V3 346 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 DIRC3C9JPN6 131 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 TNFSF11O14788 317 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 SNRPD3P62318 126 aaKnown RBP5.36□□□□□ -1.55
VPS13D-201ENST00000011700 OR2Z1Q8NG97 314 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 SPPL3Q8TCT6 385 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 P4HTMQ9NXG6 502 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 NRXN2Q9P2S2 1712 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 A6NL46 340 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 RBP4P02753 201 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 FAM106CPP0CH98 169 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 PMELP40967 661 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 MOB3BQ86TA1 216 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 TMEM37Q8WXS4 190 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 TM4SF19Q96DZ7 209 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 NUDT11Q96G61 164 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 EDIL3O43854 480 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 KRTCAP3Q53RY4 240 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 SLC25A34Q6PIV7 304 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 C10orf126Q8N4M7 172 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 HIST1H2BAQ96A08 127 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 PRSS21Q9Y6M0 314 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 ABCA2Q9BZC7 2435 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 TMEM272A0A1B0GTI8 110 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 F2RL2O00254 374 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 RPS4XP62701 263 aaKnown RBP5.36□□□□□ -1.55
VPS13D-201ENST00000011700 AWAT1Q58HT5 328 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 SPANXN1Q5VSR9 72 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 EBLN2Q6P2I7 272 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 OR1B1Q8NGR6 318 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 FOXN4Q96NZ1 517 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 A0A1B0GTH9 108 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 CA2P00918 260 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 MAS1LP35410 378 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 FAM53AQ6NSI3 398 aaPredicted RBP5.36□□□□□ -1.55
VPS13D-201ENST00000011700 OR51M1Q9H341 326 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 ZFP64Q9NPA5 681 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 PRDM7Q9NQW5 492 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 ONECUT1Q9UBC0 465 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 KLK11Q9UBX7 282 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 PHLDA3Q9Y5J5 127 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 WDR87Q6ZQQ6 2873 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 R3HDM4Q96D70 268 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 SLC25A20O43772 301 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 TMPRSS11DO60235 418 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 LEPROTL1O95214 131 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 CTSSP25774 331 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 PRDX2P32119 198 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 GUCA2AQ02747 115 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 NKAIN2Q5VXU1 208 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 Q6ZNB5 142 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 NARFLQ9H6Q4 476 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 G6PC2Q9NQR9 355 aa5.36□□□□□ -1.55
VPS13D-201ENST00000011700 B4GALT1P15291 398 aa5.35□□□□□ -1.55
VPS13D-201ENST00000011700 RPS11P62280 158 aaKnown RBP eCLIP5.35□□□□□ -1.55
VPS13D-201ENST00000011700 TNFAIP6P98066 277 aaPredicted RBP5.35□□□□□ -1.55
VPS13D-201ENST00000011700 SRSF5Q13243 272 aaKnown RBP5.35□□□□□ -1.55
VPS13D-201ENST00000011700 ARHGAP5-AS1Q96IT6 56 aa5.35□□□□□ -1.55
VPS13D-201ENST00000011700 MRPS18AQ9NVS2 196 aaKnown RBP5.35□□□□□ -1.55
VPS13D-201ENST00000011700 RABAC1Q9UI14 185 aa5.35□□□□□ -1.55
VPS13D-201ENST00000011700 PQLC2LA1A4F0 135 aa5.35□□□□□ -1.55
VPS13D-201ENST00000011700 M0R1B8 84 aa5.35□□□□□ -1.55
VPS13D-201ENST00000011700 FCARP24071 287 aa5.35□□□□□ -1.55
VPS13D-201ENST00000011700 B2MP61769 119 aa5.35□□□□□ -1.55
VPS13D-201ENST00000011700 SNRPNP63162 240 aaKnown RBP5.35□□□□□ -1.55
VPS13D-201ENST00000011700 RNFT1Q5M7Z0 435 aa5.35□□□□□ -1.55
VPS13D-201ENST00000011700 LEMD1Q68G75 181 aa5.35□□□□□ -1.55
VPS13D-201ENST00000011700 PITX1P78337 314 aaPredicted RBP5.35□□□□□ -1.55
VPS13D-201ENST00000011700 OR4C13Q8NGP0 309 aa5.35□□□□□ -1.55
VPS13D-201ENST00000011700 C12orf49Q9H741 205 aa5.35□□□□□ -1.55
VPS13D-201ENST00000011700 INSIG2Q9Y5U4 225 aa5.35□□□□□ -1.55
VPS13D-201ENST00000011700 A0A087WWC5 75 aa5.35□□□□□ -1.55
VPS13D-201ENST00000011700 ARSAP15289 507 aa5.35□□□□□ -1.55
VPS13D-201ENST00000011700 PSMB5P28074 263 aa5.35□□□□□ -1.55
VPS13D-201ENST00000011700 INSM1Q01101 510 aaPredicted RBP5.35□□□□□ -1.55
VPS13D-201ENST00000011700 LYG1Q8N1E2 194 aa5.35□□□□□ -1.55
VPS13D-201ENST00000011700 FAM169BQ8N8A8 192 aa5.35□□□□□ -1.55
VPS13D-201ENST00000011700 SGMS2Q8NHU3 365 aa5.35□□□□□ -1.55
VPS13D-201ENST00000011700 UBE2FQ969M7 185 aa5.35□□□□□ -1.55
VPS13D-201ENST00000011700 ORAI1Q96D31 301 aa5.35□□□□□ -1.55
VPS13D-201ENST00000011700 AQP10Q96PS8 301 aa5.35□□□□□ -1.55
VPS13D-201ENST00000011700 ERRFI1Q9UJM3 462 aaPredicted RBP5.35□□□□□ -1.55
VPS13D-201ENST00000011700 HIGD1AQ9Y241 93 aa5.35□□□□□ -1.55
VPS13D-201ENST00000011700 SLC35E4Q6ICL7 350 aa5.35□□□□□ -1.55
VPS13D-201ENST00000011700 ZNF788Q6ZQV5 615 aa5.35□□□□□ -1.55
VPS13D-201ENST00000011700 SLC25A37Q9NYZ2 338 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms