RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 OR13A1Q8NGR1 328 aa15.48■□□□□ 0.07
CLN3-260ENST00000637578 NDNFQ8TB73 568 aa15.48■□□□□ 0.07
CLN3-260ENST00000637578 KIRREL1Q96J84 757 aa15.48■□□□□ 0.07
CLN3-260ENST00000637578 NICN1Q9BSH3 213 aa15.48■□□□□ 0.07
CLN3-260ENST00000637578 DPCDQ9BVM2 203 aaPredicted RBP15.48■□□□□ 0.07
CLN3-260ENST00000637578 ZNF286AQ9HBT8 521 aa15.48■□□□□ 0.07
CLN3-260ENST00000637578 PITPNC1Q9UKF7 332 aa15.48■□□□□ 0.07
CLN3-260ENST00000637578 SIGLEC9Q9Y336 463 aa15.48■□□□□ 0.07
CLN3-260ENST00000637578 MEIKINA0A087WXM9 373 aa15.47■□□□□ 0.07
CLN3-260ENST00000637578 FAM90A10PA6NDY2 464 aa15.47■□□□□ 0.07
CLN3-260ENST00000637578 FAM90A18PA6NE21 464 aa15.47■□□□□ 0.07
CLN3-260ENST00000637578 FAM90A16PA6NEW6 464 aa15.47■□□□□ 0.07
CLN3-260ENST00000637578 FAM90A20PA6NIJ5 464 aa15.47■□□□□ 0.07
CLN3-260ENST00000637578 FAM90A7PA6NKC0 464 aa15.47■□□□□ 0.07
CLN3-260ENST00000637578 FAM90A12PA8MX19 464 aa15.47■□□□□ 0.07
CLN3-260ENST00000637578 FAM90A5PA8MXJ8 464 aa15.47■□□□□ 0.07
CLN3-260ENST00000637578 FAM90A23PA8MXZ1 464 aa15.47■□□□□ 0.07
CLN3-260ENST00000637578 NPIPB11E5RHQ5 1161 aa15.47■□□□□ 0.07
CLN3-260ENST00000637578 LY6LH3BQJ8 138 aa15.47■□□□□ 0.07
CLN3-260ENST00000637578 TIMM23O14925 209 aa15.47■□□□□ 0.07
CLN3-260ENST00000637578 FAM90A15PP0C7V4 464 aa15.47■□□□□ 0.07
CLN3-260ENST00000637578 FAM90A13PP0C7W8 464 aa15.47■□□□□ 0.07
CLN3-260ENST00000637578 FAM90A14PP0C7W9 464 aa15.47■□□□□ 0.07
CLN3-260ENST00000637578 FAM90A24PP0C7X0 464 aa15.47■□□□□ 0.07
CLN3-260ENST00000637578 SNRPBP14678 240 aaKnown RBP15.47■□□□□ 0.07
CLN3-260ENST00000637578 ATAD3CQ5T2N8 411 aa15.47■□□□□ 0.07
CLN3-260ENST00000637578 IDNKQ5T6J7 187 aa15.47■□□□□ 0.07
CLN3-260ENST00000637578 SIGIRRQ6IA17 410 aa15.47■□□□□ 0.07
CLN3-260ENST00000637578 RAB2BQ8WUD1 216 aa15.47■□□□□ 0.07
CLN3-260ENST00000637578 TM2D1Q9BX74 207 aa15.47■□□□□ 0.07
CLN3-260ENST00000637578 LPAR5Q9H1C0 372 aa15.47■□□□□ 0.07
CLN3-260ENST00000637578 RCC2Q9P258 522 aaKnown RBP15.47■□□□□ 0.07
CLN3-260ENST00000637578 A0A0A6YYD4 124 aa15.46■□□□□ 0.07
CLN3-260ENST00000637578 TMBIM6P55061 237 aa15.46■□□□□ 0.07
CLN3-260ENST00000637578 HLA-DRB5Q30154 266 aa15.46■□□□□ 0.07
CLN3-260ENST00000637578 LGALS14Q8TCE9 139 aa15.46■□□□□ 0.07
CLN3-260ENST00000637578 SLC25A46Q96AG3 418 aa15.46■□□□□ 0.07
CLN3-260ENST00000637578 CREB3L1Q96BA8 519 aa15.46■□□□□ 0.07
CLN3-260ENST00000637578 CYYR1Q96J86 154 aa15.46■□□□□ 0.07
CLN3-260ENST00000637578 ZNF702PQ9H963 129 aa15.46■□□□□ 0.07
CLN3-260ENST00000637578 CALYQ9NYX4 217 aa15.46■□□□□ 0.07
CLN3-260ENST00000637578 CMYA5Q8N3K9 4069 aa15.46■□□□□ 0.07
CLN3-260ENST00000637578 LEUTXA8MZ59 168 aa15.45■□□□□ 0.06
CLN3-260ENST00000637578 BUB1B-PAK6H3BSN5 160 aa15.45■□□□□ 0.06
CLN3-260ENST00000637578 M0QZ24 198 aa15.45■□□□□ 0.06
CLN3-260ENST00000637578 GLP1RP43220 463 aa15.45■□□□□ 0.06
CLN3-260ENST00000637578 OR2T6Q8NHC8 308 aa15.45■□□□□ 0.06
CLN3-260ENST00000637578 URM1Q9BTM9 101 aaKnown RBP15.45■□□□□ 0.06
CLN3-260ENST00000637578 DCSTAMPQ9H295 470 aa15.45■□□□□ 0.06
CLN3-260ENST00000637578 SPACA1Q9HBV2 294 aa15.45■□□□□ 0.06
CLN3-260ENST00000637578 RAB22AQ9UL26 194 aa15.45■□□□□ 0.06
CLN3-260ENST00000637578 CEPT1Q9Y6K0 416 aa15.45■□□□□ 0.06
CLN3-260ENST00000637578 FAM172BPA6NC97 362 aa15.45■□□□□ 0.06
CLN3-260ENST00000637578 F2RL2O00254 374 aa15.45■□□□□ 0.06
CLN3-260ENST00000637578 PRRX1P54821 245 aa15.45■□□□□ 0.06
CLN3-260ENST00000637578 SPCS2Q15005 226 aa15.45■□□□□ 0.06
CLN3-260ENST00000637578 RAB12Q6IQ22 244 aa15.45■□□□□ 0.06
CLN3-260ENST00000637578 TMEM219Q86XT9 240 aa15.45■□□□□ 0.06
CLN3-260ENST00000637578 CROCCP3Q8IVE0 287 aa15.45■□□□□ 0.06
CLN3-260ENST00000637578 OR10A7Q8NGE5 316 aa15.45■□□□□ 0.06
CLN3-260ENST00000637578 ISOC1Q96CN7 298 aa15.45■□□□□ 0.06
CLN3-260ENST00000637578 BCL7BQ9BQE9 202 aa15.45■□□□□ 0.06
CLN3-260ENST00000637578 PEX16Q9Y5Y5 336 aa15.45■□□□□ 0.06
CLN3-260ENST00000637578 WNK1Q9H4A3 2382 aa15.45■□□□□ 0.06
CLN3-260ENST00000637578 PDCD6O75340 191 aa15.44■□□□□ 0.06
CLN3-260ENST00000637578 RAB6AP20340 208 aa15.44■□□□□ 0.06
CLN3-260ENST00000637578 GZMHP20718 246 aa15.44■□□□□ 0.06
CLN3-260ENST00000637578 FUT3P21217 361 aa15.44■□□□□ 0.06
CLN3-260ENST00000637578 NKAPLQ5M9Q1 402 aa15.44■□□□□ 0.06
CLN3-260ENST00000637578 FAM89BQ8N5H3 189 aa15.44■□□□□ 0.06
CLN3-260ENST00000637578 OR9G1Q8NH87 305 aa15.44■□□□□ 0.06
CLN3-260ENST00000637578 MRGPRDQ8TDS7 321 aa15.44■□□□□ 0.06
CLN3-260ENST00000637578 NEK7Q8TDX7 302 aa15.44■□□□□ 0.06
CLN3-260ENST00000637578 CFHR4Q92496 578 aa15.44■□□□□ 0.06
CLN3-260ENST00000637578 SERTAD4Q9NUC0 356 aa15.44■□□□□ 0.06
CLN3-260ENST00000637578 IDI2-AS1Q9NZ38 188 aa15.44■□□□□ 0.06
CLN3-260ENST00000637578 VWFP04275 2813 aa15.44■□□□□ 0.06
CLN3-260ENST00000637578 H3BMQ9 156 aa15.43■□□□□ 0.06
CLN3-260ENST00000637578 TOR1AO14656 332 aa15.43■□□□□ 0.06
CLN3-260ENST00000637578 SOCS1O15524 211 aa15.43■□□□□ 0.06
CLN3-260ENST00000637578 NOL3O60936 208 aaKnown RBP15.43■□□□□ 0.06
CLN3-260ENST00000637578 CHATP28329 748 aa15.43■□□□□ 0.06
CLN3-260ENST00000637578 BLVRBP30043 206 aaPredicted RBP15.43■□□□□ 0.06
CLN3-260ENST00000637578 CEACAM3P40198 252 aa15.43■□□□□ 0.06
CLN3-260ENST00000637578 VEGFCP49767 419 aa15.43■□□□□ 0.06
CLN3-260ENST00000637578 TPTE2P1Q5T6R2 138 aa15.43■□□□□ 0.06
CLN3-260ENST00000637578 OR5H6Q8NGV6 325 aa15.43■□□□□ 0.06
CLN3-260ENST00000637578 PTX4Q96A99 478 aa15.43■□□□□ 0.06
CLN3-260ENST00000637578 NEDD4LQ96PU5 975 aa15.43■□□□□ 0.06
CLN3-260ENST00000637578 MMP28Q9H239 520 aa15.43■□□□□ 0.06
CLN3-260ENST00000637578 OOSP1A8MZH6 123 aa15.42■□□□□ 0.06
CLN3-260ENST00000637578 MCRIP1C9JLW8 97 aa15.42■□□□□ 0.06
CLN3-260ENST00000637578 J3QR06 171 aa15.42■□□□□ 0.06
CLN3-260ENST00000637578 TMEM127O75204 238 aa15.42■□□□□ 0.06
CLN3-260ENST00000637578 NFYBP25208 207 aa15.42■□□□□ 0.06
CLN3-260ENST00000637578 SSTR5P35346 364 aa15.42■□□□□ 0.06
CLN3-260ENST00000637578 SCAND1P57086 179 aa15.42■□□□□ 0.06
CLN3-260ENST00000637578 HERPUD1Q15011 391 aa15.42■□□□□ 0.06
CLN3-260ENST00000637578 C6orf201Q7Z4U5 140 aa15.42■□□□□ 0.06
CLN3-260ENST00000637578 RBM38Q9H0Z9 239 aaKnown RBP15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms