RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, human

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIM28-215	ENST00000601150	F2RL2	O00254	374 aa		13.59	□□□□□ -0.23
TRIM28-215	ENST00000601150	SDCBP	O00560	298 aa	Predicted RBP	13.59	□□□□□ -0.23
TRIM28-215	ENST00000601150	SPINT2	O43291	252 aa		13.59	□□□□□ -0.23
TRIM28-215	ENST00000601150	IGHV3-7	P01780	117 aa		13.59	□□□□□ -0.23
TRIM28-215	ENST00000601150	RCC1	P18754	421 aa	Predicted RBP	13.59	□□□□□ -0.23
TRIM28-215	ENST00000601150	RAB13	P51153	203 aa		13.59	□□□□□ -0.23
TRIM28-215	ENST00000601150	TMEM30B	Q3MIR4	351 aa		13.59	□□□□□ -0.23
TRIM28-215	ENST00000601150	FAM89B	Q8N5H3	189 aa		13.59	□□□□□ -0.23
TRIM28-215	ENST00000601150	UBALD1	Q8TB05	177 aa		13.59	□□□□□ -0.23
TRIM28-215	ENST00000601150	CYYR1	Q96J86	154 aa		13.59	□□□□□ -0.23
TRIM28-215	ENST00000601150	ZNF747	Q9BV97	191 aa		13.59	□□□□□ -0.23
TRIM28-215	ENST00000601150	OR51E2	Q9H255	320 aa		13.59	□□□□□ -0.23
TRIM28-215	ENST00000601150	VCX3A	Q9NNX9	186 aa		13.59	□□□□□ -0.23
TRIM28-215	ENST00000601150	MBNL3	Q9NUK0	354 aa	Known RBP	13.59	□□□□□ -0.23
TRIM28-215	ENST00000601150	TCF19	Q9Y242	345 aa		13.59	□□□□□ -0.23
TRIM28-215	ENST00000601150	OOSP1	A8MZH6	123 aa		13.58	□□□□□ -0.24
TRIM28-215	ENST00000601150	LY6L	H3BQJ8	138 aa		13.58	□□□□□ -0.24
TRIM28-215	ENST00000601150	LDLRAD4	O15165	306 aa		13.58	□□□□□ -0.24
TRIM28-215	ENST00000601150	SOCS1	O15524	211 aa		13.58	□□□□□ -0.24
TRIM28-215	ENST00000601150	CD36	P16671	472 aa		13.58	□□□□□ -0.24
TRIM28-215	ENST00000601150	GADD45A	P24522	165 aa		13.58	□□□□□ -0.24
TRIM28-215	ENST00000601150	GNG10	P50151	68 aa		13.58	□□□□□ -0.24
TRIM28-215	ENST00000601150	ARHGDIB	P52566	201 aa		13.58	□□□□□ -0.24
TRIM28-215	ENST00000601150	TPTE2P1	Q5T6R2	138 aa		13.58	□□□□□ -0.24
TRIM28-215	ENST00000601150		Q6ZSV7	163 aa		13.58	□□□□□ -0.24
TRIM28-215	ENST00000601150	TPRA1	Q86W33	373 aa		13.58	□□□□□ -0.24
TRIM28-215	ENST00000601150	MRPL30	Q8TCC3	161 aa	Known RBP	13.58	□□□□□ -0.24
TRIM28-215	ENST00000601150	CHCHD6	Q9BRQ6	235 aa		13.58	□□□□□ -0.24
TRIM28-215	ENST00000601150	ZNF696	Q9H7X3	374 aa		13.58	□□□□□ -0.24
TRIM28-215	ENST00000601150	PLEKHJ1	Q9NW61	149 aa		13.58	□□□□□ -0.24
TRIM28-215	ENST00000601150	GFOD1	Q9NXC2	390 aa		13.58	□□□□□ -0.24
TRIM28-215	ENST00000601150	KCNIP1	Q9NZI2	227 aa		13.58	□□□□□ -0.24
TRIM28-215	ENST00000601150	PITPNC1	Q9UKF7	332 aa		13.58	□□□□□ -0.24
TRIM28-215	ENST00000601150	RAB22A	Q9UL26	194 aa		13.58	□□□□□ -0.24
TRIM28-215	ENST00000601150	TMEM272	A0A1B0GTI8	110 aa		13.57	□□□□□ -0.24
TRIM28-215	ENST00000601150	CLPSL1	A2RUU4	121 aa		13.57	□□□□□ -0.24
TRIM28-215	ENST00000601150		A6NDX4	124 aa		13.57	□□□□□ -0.24
TRIM28-215	ENST00000601150	TSPAN9	O75954	239 aa		13.57	□□□□□ -0.24
TRIM28-215	ENST00000601150	HBZ	P02008	142 aa		13.57	□□□□□ -0.24
TRIM28-215	ENST00000601150	JUNB	P17275	347 aa	Predicted RBP	13.57	□□□□□ -0.24
TRIM28-215	ENST00000601150	BRS3	P32247	399 aa		13.57	□□□□□ -0.24
TRIM28-215	ENST00000601150	VEGFC	P49767	419 aa		13.57	□□□□□ -0.24
TRIM28-215	ENST00000601150	LOXL3	P58215	753 aa		13.57	□□□□□ -0.24
TRIM28-215	ENST00000601150	OLFML2A	Q68BL7	652 aa		13.57	□□□□□ -0.24
TRIM28-215	ENST00000601150	CCDC144NL	Q6NUI1	221 aa		13.57	□□□□□ -0.24
TRIM28-215	ENST00000601150	ZNF554	Q86TJ5	538 aa		13.57	□□□□□ -0.24
TRIM28-215	ENST00000601150	NR2C2AP	Q86WQ0	139 aa		13.57	□□□□□ -0.24
TRIM28-215	ENST00000601150	PRR18	Q8N4B5	295 aa		13.57	□□□□□ -0.24
TRIM28-215	ENST00000601150	OR56B1	Q8NGI3	324 aa		13.57	□□□□□ -0.24
TRIM28-215	ENST00000601150	KCTD7	Q96MP8	289 aa		13.57	□□□□□ -0.24
TRIM28-215	ENST00000601150	C16orf95	Q9H693	158 aa		13.57	□□□□□ -0.24
TRIM28-215	ENST00000601150	LIN7B	Q9HAP6	207 aa		13.57	□□□□□ -0.24
TRIM28-215	ENST00000601150	TAF9B	Q9HBM6	251 aa		13.57	□□□□□ -0.24
TRIM28-215	ENST00000601150	HSF4	Q9ULV5	492 aa		13.57	□□□□□ -0.24
TRIM28-215	ENST00000601150	IGHV3-43	A0A0B4J1X8	118 aa		13.56	□□□□□ -0.24
TRIM28-215	ENST00000601150	LOC100506127	A0A0U1RQW1	187 aa		13.56	□□□□□ -0.24
TRIM28-215	ENST00000601150	SMIM30	A4D0T7	59 aa		13.56	□□□□□ -0.24
TRIM28-215	ENST00000601150	FOXI3	A8MTJ6	420 aa	Predicted RBP	13.56	□□□□□ -0.24
TRIM28-215	ENST00000601150	NOTO	A8MTQ0	251 aa		13.56	□□□□□ -0.24
TRIM28-215	ENST00000601150	CHST1	O43916	411 aa		13.56	□□□□□ -0.24
TRIM28-215	ENST00000601150	IGHV3-43D	P0DP04	118 aa		13.56	□□□□□ -0.24
TRIM28-215	ENST00000601150	MNDA	P41218	407 aa		13.56	□□□□□ -0.24
TRIM28-215	ENST00000601150	MADCAM1	Q13477	382 aa		13.56	□□□□□ -0.24
TRIM28-215	ENST00000601150	SHISA2	Q6UWI4	295 aa		13.56	□□□□□ -0.24
TRIM28-215	ENST00000601150	C8orf31	Q8N9H6	132 aa		13.56	□□□□□ -0.24
TRIM28-215	ENST00000601150	OR10X1	Q8NGY0	326 aa		13.56	□□□□□ -0.24
TRIM28-215	ENST00000601150	OR1L1	Q8NH94	360 aa		13.56	□□□□□ -0.24
TRIM28-215	ENST00000601150	LINC01006	Q8NI28	216 aa		13.56	□□□□□ -0.24
TRIM28-215	ENST00000601150	TOMM40L	Q969M1	308 aa		13.56	□□□□□ -0.24
TRIM28-215	ENST00000601150	RPE	Q96AT9	228 aa		13.56	□□□□□ -0.24
TRIM28-215	ENST00000601150	CHMP1A	Q9HD42	196 aa	Predicted RBP	13.56	□□□□□ -0.24
TRIM28-215	ENST00000601150	GNG12	Q9UBI6	72 aa		13.56	□□□□□ -0.24
TRIM28-215	ENST00000601150		A0A1W2PPE3	182 aa		13.55	□□□□□ -0.24
TRIM28-215	ENST00000601150	NAPSA	O96009	420 aa		13.55	□□□□□ -0.24
TRIM28-215	ENST00000601150	RAB6A	P20340	208 aa		13.55	□□□□□ -0.24
TRIM28-215	ENST00000601150	TMEM50B	P56557	158 aa		13.55	□□□□□ -0.24
TRIM28-215	ENST00000601150	PLA2G7	Q13093	441 aa		13.55	□□□□□ -0.24
TRIM28-215	ENST00000601150		Q3ZCU0	254 aa		13.55	□□□□□ -0.24
TRIM28-215	ENST00000601150	CCBE1	Q6UXH8	406 aa	Predicted RBP	13.55	□□□□□ -0.24
TRIM28-215	ENST00000601150		Q6ZTK2	550 aa		13.55	□□□□□ -0.24
TRIM28-215	ENST00000601150	MOB1B	Q7L9L4	216 aa		13.55	□□□□□ -0.24
TRIM28-215	ENST00000601150	TMEM219	Q86XT9	240 aa		13.55	□□□□□ -0.24
TRIM28-215	ENST00000601150	LINC00311	Q8N616	119 aa		13.55	□□□□□ -0.24
TRIM28-215	ENST00000601150	OR4C13	Q8NGP0	309 aa		13.55	□□□□□ -0.24
TRIM28-215	ENST00000601150	NPFFR1	Q9GZQ6	430 aa		13.55	□□□□□ -0.24
TRIM28-215	ENST00000601150	RIMS4	Q9H426	269 aa	Predicted RBP	13.55	□□□□□ -0.24
TRIM28-215	ENST00000601150	RANBP3	Q9H6Z4	567 aa	Predicted RBP	13.55	□□□□□ -0.24
TRIM28-215	ENST00000601150	AK3	Q9UIJ7	227 aa		13.55	□□□□□ -0.24
TRIM28-215	ENST00000601150	RNF114	Q9Y508	228 aa		13.55	□□□□□ -0.24
TRIM28-215	ENST00000601150		A0A0B4J203	849 aa		13.54	□□□□□ -0.24
TRIM28-215	ENST00000601150	SLC2A2	P11168	524 aa	Predicted RBP	13.54	□□□□□ -0.24
TRIM28-215	ENST00000601150	SDC2	P34741	201 aa		13.54	□□□□□ -0.24
TRIM28-215	ENST00000601150	RAB7A	P51149	207 aa		13.54	□□□□□ -0.24
TRIM28-215	ENST00000601150	EFNB2	P52799	333 aa		13.54	□□□□□ -0.24
TRIM28-215	ENST00000601150	TIMM50	Q3ZCQ8	353 aa		13.54	□□□□□ -0.24
TRIM28-215	ENST00000601150	FAM53A	Q6NSI3	398 aa	Predicted RBP	13.54	□□□□□ -0.24
TRIM28-215	ENST00000601150	ZNF880	Q6PDB4	577 aa		13.54	□□□□□ -0.24
TRIM28-215	ENST00000601150	DTX3	Q8N9I9	347 aa		13.54	□□□□□ -0.24
TRIM28-215	ENST00000601150	SETD6	Q8TBK2	473 aa		13.54	□□□□□ -0.24
TRIM28-215	ENST00000601150	WFDC12	Q8WWY7	111 aa		13.54	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 34 ms