RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 IFITM5A6NNB3 132 aa11.16□□□□□ -0.62
UPF1-205ENST00000598209 C12orf77C9JDV5 145 aa11.16□□□□□ -0.62
UPF1-205ENST00000598209 LY6LH3BQJ8 138 aa11.16□□□□□ -0.62
UPF1-205ENST00000598209 F2RL2O00254 374 aa11.16□□□□□ -0.62
UPF1-205ENST00000598209 SDCBPO00560 298 aaPredicted RBP11.16□□□□□ -0.62
UPF1-205ENST00000598209 SOCS1O15524 211 aa11.16□□□□□ -0.62
UPF1-205ENST00000598209 TNFAIP8O95379 198 aa11.16□□□□□ -0.62
UPF1-205ENST00000598209 RCC1P18754 421 aaPredicted RBP11.16□□□□□ -0.62
UPF1-205ENST00000598209 TPTE2P1Q5T6R2 138 aa11.16□□□□□ -0.62
UPF1-205ENST00000598209 OLFML2AQ68BL7 652 aa11.16□□□□□ -0.62
UPF1-205ENST00000598209 TRAT1Q6PIZ9 186 aa11.16□□□□□ -0.62
UPF1-205ENST00000598209 LIAT1Q6ZQX7 453 aa11.16□□□□□ -0.62
UPF1-205ENST00000598209 FAM89BQ8N5H3 189 aa11.16□□□□□ -0.62
UPF1-205ENST00000598209 OR52M1Q8NGK5 317 aa11.16□□□□□ -0.62
UPF1-205ENST00000598209 OR51E2Q9H255 320 aa11.16□□□□□ -0.62
UPF1-205ENST00000598209 RAB18Q9NP72 206 aa11.16□□□□□ -0.62
UPF1-205ENST00000598209 RAB9BQ9NP90 201 aa11.16□□□□□ -0.62
UPF1-205ENST00000598209 FBLN5Q9UBX5 448 aa11.16□□□□□ -0.62
UPF1-205ENST00000598209 AMMECR1Q9Y4X0 333 aaPredicted RBP11.16□□□□□ -0.62
UPF1-205ENST00000598209 A0A087WXM4 84 aa11.15□□□□□ -0.62
UPF1-205ENST00000598209 IGHV3-43A0A0B4J1X8 118 aa11.15□□□□□ -0.62
UPF1-205ENST00000598209 TMEM272A0A1B0GTI8 110 aa11.15□□□□□ -0.62
UPF1-205ENST00000598209 A0A1W2PPE3 182 aa11.15□□□□□ -0.62
UPF1-205ENST00000598209 SMIM30A4D0T7 59 aa11.15□□□□□ -0.62
UPF1-205ENST00000598209 A6NDX4 124 aa11.15□□□□□ -0.62
UPF1-205ENST00000598209 LDLRAD4O15165 306 aa11.15□□□□□ -0.62
UPF1-205ENST00000598209 SPINT2O43291 252 aa11.15□□□□□ -0.62
UPF1-205ENST00000598209 CHST1O43916 411 aa11.15□□□□□ -0.62
UPF1-205ENST00000598209 TSPAN9O75954 239 aa11.15□□□□□ -0.62
UPF1-205ENST00000598209 HBZP02008 142 aa11.15□□□□□ -0.62
UPF1-205ENST00000598209 IGHV3-43DP0DP04 118 aa11.15□□□□□ -0.62
UPF1-205ENST00000598209 VEGFCP49767 419 aa11.15□□□□□ -0.62
UPF1-205ENST00000598209 ARHGDIBP52566 201 aa11.15□□□□□ -0.62
UPF1-205ENST00000598209 LOXL3P58215 753 aa11.15□□□□□ -0.62
UPF1-205ENST00000598209 FAM53AQ6NSI3 398 aaPredicted RBP11.15□□□□□ -0.62
UPF1-205ENST00000598209 CCBE1Q6UXH8 406 aaPredicted RBP11.15□□□□□ -0.62
UPF1-205ENST00000598209 NR2C2APQ86WQ0 139 aa11.15□□□□□ -0.62
UPF1-205ENST00000598209 TMEM219Q86XT9 240 aa11.15□□□□□ -0.62
UPF1-205ENST00000598209 PRR18Q8N4B5 295 aa11.15□□□□□ -0.62
UPF1-205ENST00000598209 TSPAN14Q8NG11 270 aa11.15□□□□□ -0.62
UPF1-205ENST00000598209 OR1L1Q8NH94 360 aa11.15□□□□□ -0.62
UPF1-205ENST00000598209 LINC01006Q8NI28 216 aa11.15□□□□□ -0.62
UPF1-205ENST00000598209 C16orf95Q9H693 158 aa11.15□□□□□ -0.62
UPF1-205ENST00000598209 MBNL3Q9NUK0 354 aaKnown RBP11.15□□□□□ -0.62
UPF1-205ENST00000598209 PLEKHJ1Q9NW61 149 aa11.15□□□□□ -0.62
UPF1-205ENST00000598209 GFOD1Q9NXC2 390 aa11.15□□□□□ -0.62
UPF1-205ENST00000598209 KCNIP1Q9NZI2 227 aa11.15□□□□□ -0.62
UPF1-205ENST00000598209 PITPNC1Q9UKF7 332 aa11.15□□□□□ -0.62
UPF1-205ENST00000598209 RAB22AQ9UL26 194 aa11.15□□□□□ -0.62
UPF1-205ENST00000598209 RNF114Q9Y508 228 aa11.15□□□□□ -0.62
UPF1-205ENST00000598209 FOXI3A8MTJ6 420 aaPredicted RBP11.14□□□□□ -0.63
UPF1-205ENST00000598209 OOSP1A8MZH6 123 aa11.14□□□□□ -0.63
UPF1-205ENST00000598209 CD36P16671 472 aa11.14□□□□□ -0.63
UPF1-205ENST00000598209 GADD45AP24522 165 aa11.14□□□□□ -0.63
UPF1-205ENST00000598209 PLA2G7Q13093 441 aa11.14□□□□□ -0.63
UPF1-205ENST00000598209 CCDC144NLQ6NUI1 221 aa11.14□□□□□ -0.63
UPF1-205ENST00000598209 SHISA2Q6UWI4 295 aa11.14□□□□□ -0.63
UPF1-205ENST00000598209 OR10X1Q8NGY0 326 aa11.14□□□□□ -0.63
UPF1-205ENST00000598209 TOMM40LQ969M1 308 aa11.14□□□□□ -0.63
UPF1-205ENST00000598209 RPEQ96AT9 228 aa11.14□□□□□ -0.63
UPF1-205ENST00000598209 CHCHD6Q9BRQ6 235 aa11.14□□□□□ -0.63
UPF1-205ENST00000598209 LIN7BQ9HAP6 207 aa11.14□□□□□ -0.63
UPF1-205ENST00000598209 TAF9BQ9HBM6 251 aa11.14□□□□□ -0.63
UPF1-205ENST00000598209 VCX3AQ9NNX9 186 aa11.14□□□□□ -0.63
UPF1-205ENST00000598209 A0A0B4J203 849 aa11.13□□□□□ -0.63
UPF1-205ENST00000598209 LOC100506127A0A0U1RQW1 187 aa11.13□□□□□ -0.63
UPF1-205ENST00000598209 NOTOA8MTQ0 251 aa11.13□□□□□ -0.63
UPF1-205ENST00000598209 CD24P25063 80 aa11.13□□□□□ -0.63
UPF1-205ENST00000598209 BRS3P32247 399 aa11.13□□□□□ -0.63
UPF1-205ENST00000598209 TMEM50BP56557 158 aa11.13□□□□□ -0.63
UPF1-205ENST00000598209 MADCAM1Q13477 382 aa11.13□□□□□ -0.63
UPF1-205ENST00000598209 TMEM30BQ3MIR4 351 aa11.13□□□□□ -0.63
UPF1-205ENST00000598209 C5orf24Q7Z6I8 188 aa11.13□□□□□ -0.63
UPF1-205ENST00000598209 ZNF554Q86TJ5 538 aa11.13□□□□□ -0.63
UPF1-205ENST00000598209 TPRA1Q86W33 373 aa11.13□□□□□ -0.63
UPF1-205ENST00000598209 LINC00311Q8N616 119 aa11.13□□□□□ -0.63
UPF1-205ENST00000598209 OR56B1Q8NGI3 324 aa11.13□□□□□ -0.63
UPF1-205ENST00000598209 OR10V1Q8NGI7 309 aa11.13□□□□□ -0.63
UPF1-205ENST00000598209 OR4C13Q8NGP0 309 aa11.13□□□□□ -0.63
UPF1-205ENST00000598209 WFDC12Q8WWY7 111 aa11.13□□□□□ -0.63
UPF1-205ENST00000598209 KCTD7Q96MP8 289 aa11.13□□□□□ -0.63
UPF1-205ENST00000598209 PECRQ9BY49 303 aa11.13□□□□□ -0.63
UPF1-205ENST00000598209 NPFFR1Q9GZQ6 430 aa11.13□□□□□ -0.63
UPF1-205ENST00000598209 RNF167Q9H6Y7 350 aa11.13□□□□□ -0.63
UPF1-205ENST00000598209 RANBP3Q9H6Z4 567 aaPredicted RBP11.13□□□□□ -0.63
UPF1-205ENST00000598209 ZNF696Q9H7X3 374 aa11.13□□□□□ -0.63
UPF1-205ENST00000598209 CHMP1AQ9HD42 196 aaPredicted RBP11.13□□□□□ -0.63
UPF1-205ENST00000598209 GNG12Q9UBI6 72 aa11.13□□□□□ -0.63
UPF1-205ENST00000598209 AK3Q9UIJ7 227 aa11.13□□□□□ -0.63
UPF1-205ENST00000598209 HSF4Q9ULV5 492 aa11.13□□□□□ -0.63
UPF1-205ENST00000598209 NAPSAO96009 420 aa11.12□□□□□ -0.63
UPF1-205ENST00000598209 SLC2A2P11168 524 aaPredicted RBP11.12□□□□□ -0.63
UPF1-205ENST00000598209 RAB6AP20340 208 aa11.12□□□□□ -0.63
UPF1-205ENST00000598209 MNDAP41218 407 aa11.12□□□□□ -0.63
UPF1-205ENST00000598209 EFNB2P52799 333 aa11.12□□□□□ -0.63
UPF1-205ENST00000598209 PROK1P58294 105 aa11.12□□□□□ -0.63
UPF1-205ENST00000598209 DIAPH2-AS1Q14236 149 aa11.12□□□□□ -0.63
UPF1-205ENST00000598209 HMGN3Q15651 99 aa11.12□□□□□ -0.63
UPF1-205ENST00000598209 Q3ZCU0 254 aa11.12□□□□□ -0.63
UPF1-205ENST00000598209 ZNF880Q6PDB4 577 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms