RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 CD36P16671 472 aa1.69□□□□□ -2.14
SS18-214ENST00000580003 HNRNPA1L2Q32P51 320 aaKnown RBP1.69□□□□□ -2.14
SS18-214ENST00000580003 FAM162BQ5T6X4 162 aa1.69□□□□□ -2.14
SS18-214ENST00000580003 MITD1Q8WV92 249 aa1.69□□□□□ -2.14
SS18-214ENST00000580003 GLT1D1Q96MS3 346 aa1.69□□□□□ -2.14
SS18-214ENST00000580003 FBXL15Q9H469 300 aa1.69□□□□□ -2.14
SS18-214ENST00000580003 SMDT1Q9H4I9 107 aa1.69□□□□□ -2.14
SS18-214ENST00000580003 AMMECR1Q9Y4X0 333 aaPredicted RBP1.69□□□□□ -2.14
SS18-214ENST00000580003 RP1L1Q8IWN7 2480 aaPredicted RBP1.69□□□□□ -2.14
SS18-214ENST00000580003 PTPRJQ12913 1337 aa1.68□□□□□ -2.14
SS18-214ENST00000580003 hCG_2039718K7EN88 272 aa1.68□□□□□ -2.14
SS18-214ENST00000580003 AKR1C4P17516 323 aa1.68□□□□□ -2.14
SS18-214ENST00000580003 EMP2P54851 167 aa1.68□□□□□ -2.14
SS18-214ENST00000580003 NAP1L5Q96NT1 182 aaPredicted RBP1.68□□□□□ -2.14
SS18-214ENST00000580003 HAUS4Q9H6D7 363 aa1.68□□□□□ -2.14
SS18-214ENST00000580003 TMBIM4Q9HC24 238 aa1.68□□□□□ -2.14
SS18-214ENST00000580003 BZW2Q9Y6E2 419 aaKnown RBP1.68□□□□□ -2.14
SS18-214ENST00000580003 USH1CQ9Y6N9 552 aa1.68□□□□□ -2.14
SS18-214ENST00000580003 KMT2BQ9UMN6 2715 aaPredicted RBP1.68□□□□□ -2.14
SS18-214ENST00000580003 ZNF638Q14966 1978 aaKnown RBP1.67□□□□□ -2.14
SS18-214ENST00000580003 PSMD11O00231 422 aa1.67□□□□□ -2.14
SS18-214ENST00000580003 PTNP21246 168 aa1.67□□□□□ -2.14
SS18-214ENST00000580003 VAMP3Q15836 100 aa1.67□□□□□ -2.14
SS18-214ENST00000580003 HES3Q5TGS1 186 aa1.67□□□□□ -2.14
SS18-214ENST00000580003 SSX6Q7RTT6 188 aa1.67□□□□□ -2.14
SS18-214ENST00000580003 ACBD4Q8NC06 268 aa1.67□□□□□ -2.14
SS18-214ENST00000580003 OR9I1Q8NGQ6 314 aa1.67□□□□□ -2.14
SS18-214ENST00000580003 GALMQ96C23 342 aa1.67□□□□□ -2.14
SS18-214ENST00000580003 GPR22Q99680 433 aa1.67□□□□□ -2.14
SS18-214ENST00000580003 PRSS27Q9BQR3 290 aa1.67□□□□□ -2.14
SS18-214ENST00000580003 Q9BRP9 147 aa1.67□□□□□ -2.14
SS18-214ENST00000580003 PSMD13Q9UNM6 376 aa1.67□□□□□ -2.14
SS18-214ENST00000580003 IGLV3-9A0A075B6K5 115 aa1.66□□□□□ -2.14
SS18-214ENST00000580003 MGAT4DA6NG13 374 aa1.66□□□□□ -2.14
SS18-214ENST00000580003 ZMPSTE24O75844 475 aa1.66□□□□□ -2.14
SS18-214ENST00000580003 SOD1P00441 154 aa1.66□□□□□ -2.14
SS18-214ENST00000580003 OTCP00480 354 aa1.66□□□□□ -2.14
SS18-214ENST00000580003 FBP1P09467 338 aa1.66□□□□□ -2.14
SS18-214ENST00000580003 TSPAN5P62079 268 aa1.66□□□□□ -2.14
SS18-214ENST00000580003 VSNL1P62760 191 aa1.66□□□□□ -2.14
SS18-214ENST00000580003 TRIML2Q8N7C3 387 aa1.66□□□□□ -2.14
SS18-214ENST00000580003 ZNRF2Q8NHG8 242 aa1.66□□□□□ -2.14
SS18-214ENST00000580003 EBNA1BP2Q99848 306 aaKnown RBP1.66□□□□□ -2.14
SS18-214ENST00000580003 BCL7BQ9BQE9 202 aa1.66□□□□□ -2.14
SS18-214ENST00000580003 FAAP24Q9BTP7 215 aa1.66□□□□□ -2.14
SS18-214ENST00000580003 NDUFB11Q9NX14 153 aa1.66□□□□□ -2.14
SS18-214ENST00000580003 SCML1Q9UN30 329 aa1.66□□□□□ -2.14
SS18-214ENST00000580003 LAMB2P55268 1798 aa1.66□□□□□ -2.14
SS18-214ENST00000580003 RTEL1-TNFRSF6BF6WH68 1400 aa1.66□□□□□ -2.14
SS18-214ENST00000580003 RGS12O14924 1447 aa1.66□□□□□ -2.14
SS18-214ENST00000580003 FLG2Q5D862 2391 aaPredicted RBP1.65□□□□□ -2.14
SS18-214ENST00000580003 GOLGA8IPA6NC78 632 aa1.65□□□□□ -2.15
SS18-214ENST00000580003 J3QLI3 93 aa1.65□□□□□ -2.15
SS18-214ENST00000580003 BSPH1Q075Z2 132 aa1.65□□□□□ -2.15
SS18-214ENST00000580003 C16orf78Q8WTQ4 265 aa1.65□□□□□ -2.15
SS18-214ENST00000580003 CIDECQ96AQ7 238 aaPredicted RBP1.65□□□□□ -2.15
SS18-214ENST00000580003 MRPS24Q96EL2 167 aaKnown RBP1.65□□□□□ -2.15
SS18-214ENST00000580003 B4DEV8 164 aa1.64□□□□□ -2.15
SS18-214ENST00000580003 BOLA2-SMG1P6H3BVE0 249 aa1.64□□□□□ -2.15
SS18-214ENST00000580003 ALOX5APP20292 161 aa1.64□□□□□ -2.15
SS18-214ENST00000580003 PSMA1P25786 263 aaKnown RBP1.64□□□□□ -2.15
SS18-214ENST00000580003 GABARAPL2P60520 117 aa1.64□□□□□ -2.15
SS18-214ENST00000580003 DEFA6Q01524 100 aa1.64□□□□□ -2.15
SS18-214ENST00000580003 MAPK14Q16539 360 aa1.64□□□□□ -2.15
SS18-214ENST00000580003 EBLN2Q6P2I7 272 aa1.64□□□□□ -2.15
SS18-214ENST00000580003 ZBTB8OSQ8IWT0 167 aa1.64□□□□□ -2.15
SS18-214ENST00000580003 OR10A6Q8NH74 314 aa1.64□□□□□ -2.15
SS18-214ENST00000580003 PGLYRP3Q96LB9 341 aa1.64□□□□□ -2.15
SS18-214ENST00000580003 MRPL32Q9BYC8 188 aaKnown RBP1.64□□□□□ -2.15
SS18-214ENST00000580003 FIS1Q9Y3D6 152 aa1.64□□□□□ -2.15
SS18-214ENST00000580003 MDC1Q14676 2089 aaKnown RBP1.63□□□□□ -2.15
SS18-214ENST00000580003 CDIPTO14735 213 aa1.63□□□□□ -2.15
SS18-214ENST00000580003 SHOX2O60902 331 aaPredicted RBP1.63□□□□□ -2.15
SS18-214ENST00000580003 CD200P41217 278 aa1.63□□□□□ -2.15
SS18-214ENST00000580003 HINT1P49773 126 aaPredicted RBP1.63□□□□□ -2.15
SS18-214ENST00000580003 PAFAH1B3Q15102 231 aaKnown RBP1.63□□□□□ -2.15
SS18-214ENST00000580003 Q6ZT83 130 aa1.63□□□□□ -2.15
SS18-214ENST00000580003 SUN5Q8TC36 379 aa1.63□□□□□ -2.15
SS18-214ENST00000580003 C11orf49Q9H6J7 331 aa1.63□□□□□ -2.15
SS18-214ENST00000580003 METTL8Q9H825 291 aaKnown RBP1.63□□□□□ -2.15
SS18-214ENST00000580003 TAS2R13Q9NYV9 303 aa1.63□□□□□ -2.15
SS18-214ENST00000580003 TRGV2A0A075B6R0 118 aa1.62□□□□□ -2.15
SS18-214ENST00000580003 ARRDC5A6NEK1 342 aa1.62□□□□□ -2.15
SS18-214ENST00000580003 C8orf87E5RJ46 101 aa1.62□□□□□ -2.15
SS18-214ENST00000580003 IGHV3-30-3P0DP02 117 aa1.62□□□□□ -2.15
SS18-214ENST00000580003 UGT2B10P36537 528 aa1.62□□□□□ -2.15
SS18-214ENST00000580003 C1QTNF8P60827 252 aa1.62□□□□□ -2.15
SS18-214ENST00000580003 PDK2Q15119 407 aa1.62□□□□□ -2.15
SS18-214ENST00000580003 ZBTB6Q15916 424 aa1.62□□□□□ -2.15
SS18-214ENST00000580003 LGALS9CQ6DKI2 356 aa1.62□□□□□ -2.15
SS18-214ENST00000580003 C10orf126Q8N4M7 172 aa1.62□□□□□ -2.15
SS18-214ENST00000580003 OR4X2Q8NGF9 303 aa1.62□□□□□ -2.15
SS18-214ENST00000580003 MGLLQ99685 303 aa1.62□□□□□ -2.15
SS18-214ENST00000580003 XKR8Q9H6D3 395 aa1.62□□□□□ -2.15
SS18-214ENST00000580003 IGHV3-73A0A0B4J1V6 119 aa1.61□□□□□ -2.15
SS18-214ENST00000580003 IGKV1D-43A0A0B4J1Z2 117 aa1.61□□□□□ -2.15
SS18-214ENST00000580003 FABP7O15540 132 aa1.61□□□□□ -2.15
SS18-214ENST00000580003 NAPSAO96009 420 aa1.61□□□□□ -2.15
SS18-214ENST00000580003 SLC35A2P78381 396 aa1.61□□□□□ -2.15
SS18-214ENST00000580003 CD164Q04900 197 aa1.61□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms