RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 DHX35Q9H5Z1 703 aaKnown RBP4.24□□□□□ -1.73
VPS53-219ENST00000576019 METTL17Q9H7H0 456 aaPredicted RBP4.24□□□□□ -1.73
VPS53-219ENST00000576019 SLC40A1Q9NP59 571 aa4.24□□□□□ -1.73
VPS53-219ENST00000576019 ABCB9Q9NP78 766 aa4.24□□□□□ -1.73
VPS53-219ENST00000576019 MYOZ1Q9NP98 299 aaPredicted RBP4.24□□□□□ -1.73
VPS53-219ENST00000576019 TAS2R13Q9NYV9 303 aa4.24□□□□□ -1.73
VPS53-219ENST00000576019 VAX2Q9UIW0 290 aa4.24□□□□□ -1.73
VPS53-219ENST00000576019 F11RQ9Y624 299 aaKnown RBP4.24□□□□□ -1.73
VPS53-219ENST00000576019 A0A0J9YXY3 114 aa4.23□□□□□ -1.73
VPS53-219ENST00000576019 F5H768 121 aa4.23□□□□□ -1.73
VPS53-219ENST00000576019 LINC01619G3V211 115 aa4.23□□□□□ -1.73
VPS53-219ENST00000576019 SLC16A4O15374 487 aa4.23□□□□□ -1.73
VPS53-219ENST00000576019 SLC31A2O15432 143 aa4.23□□□□□ -1.73
VPS53-219ENST00000576019 RPP14O95059 124 aaKnown RBP4.23□□□□□ -1.73
VPS53-219ENST00000576019 IFNA5P01569 189 aa4.23□□□□□ -1.73
VPS53-219ENST00000576019 IGHV3-23P01764 117 aa4.23□□□□□ -1.73
VPS53-219ENST00000576019 RPS17P08708 135 aaKnown RBP4.23□□□□□ -1.73
VPS53-219ENST00000576019 UGT2B7P16662 529 aa4.23□□□□□ -1.73
VPS53-219ENST00000576019 RAB3BP20337 219 aa4.23□□□□□ -1.73
VPS53-219ENST00000576019 RPL34P49207 117 aaKnown RBP4.23□□□□□ -1.73
VPS53-219ENST00000576019 NKX2-5P52952 324 aaPredicted RBP4.23□□□□□ -1.73
VPS53-219ENST00000576019 RAB38P57729 211 aa4.23□□□□□ -1.73
VPS53-219ENST00000576019 VSX2P58304 361 aaPredicted RBP4.23□□□□□ -1.73
VPS53-219ENST00000576019 TAS2R46P59540 309 aa4.23□□□□□ -1.73
VPS53-219ENST00000576019 REEP5Q00765 189 aa4.23□□□□□ -1.73
VPS53-219ENST00000576019 IRF4Q15306 451 aa4.23□□□□□ -1.73
VPS53-219ENST00000576019 GUCA2BQ16661 112 aa4.23□□□□□ -1.73
VPS53-219ENST00000576019 IMPG1Q17R60 797 aa4.23□□□□□ -1.73
VPS53-219ENST00000576019 PDZD11Q5EBL8 140 aa4.23□□□□□ -1.73
VPS53-219ENST00000576019 CHCHD2P9Q5T1J5 151 aaPredicted RBP4.23□□□□□ -1.73
VPS53-219ENST00000576019 FAM71E2Q8N5Q1 922 aa4.23□□□□□ -1.73
VPS53-219ENST00000576019 TTLQ8NG68 377 aa4.23□□□□□ -1.73
VPS53-219ENST00000576019 OR11H7Q8NGC8 314 aa4.23□□□□□ -1.73
VPS53-219ENST00000576019 OR5D18Q8NGL1 313 aa4.23□□□□□ -1.73
VPS53-219ENST00000576019 ACTL9Q8TC94 416 aa4.23□□□□□ -1.73
VPS53-219ENST00000576019 ZFAND1Q8TCF1 268 aa4.23□□□□□ -1.73
VPS53-219ENST00000576019 RNASE6Q93091 150 aaKnown RBP4.23□□□□□ -1.73
VPS53-219ENST00000576019 DNAJC19Q96DA6 116 aa4.23□□□□□ -1.73
VPS53-219ENST00000576019 MRAP2Q96G30 205 aa4.23□□□□□ -1.73
VPS53-219ENST00000576019 AURKBQ96GD4 344 aaPredicted RBP4.23□□□□□ -1.73
VPS53-219ENST00000576019 RNF185Q96GF1 192 aa4.23□□□□□ -1.73
VPS53-219ENST00000576019 Q96MT0 163 aa4.23□□□□□ -1.73
VPS53-219ENST00000576019 RDH12Q96NR8 316 aa4.23□□□□□ -1.73
VPS53-219ENST00000576019 RSPO3Q9BXY4 272 aaPredicted RBP4.23□□□□□ -1.73
VPS53-219ENST00000576019 KRTAP9-8Q9BYQ0 159 aa4.23□□□□□ -1.73
VPS53-219ENST00000576019 BARHL1Q9BZE3 327 aa4.23□□□□□ -1.73
VPS53-219ENST00000576019 FGFR1OP2Q9NVK5 253 aa4.23□□□□□ -1.73
VPS53-219ENST00000576019 TAS2R9Q9NYW1 312 aa4.23□□□□□ -1.73
VPS53-219ENST00000576019 ANXA10Q9UJ72 324 aa4.23□□□□□ -1.73
VPS53-219ENST00000576019 A0A087WWV3 80 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 J3QT63 122 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 CRXO43186 299 aaPredicted RBP4.22□□□□□ -1.73
VPS53-219ENST00000576019 SLC37A4O43826 429 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 UPK1BO75841 260 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 PTHP01270 115 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 IGKV1D-16P01601 117 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 FABP3P05413 133 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 CTXN2P0C2S0 81 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 HIST1H1CP16403 213 aaKnown RBP4.22□□□□□ -1.73
VPS53-219ENST00000576019 NELFEP18615 380 aaKnown RBP4.22□□□□□ -1.73
VPS53-219ENST00000576019 RCC1P18754 421 aaPredicted RBP4.22□□□□□ -1.73
VPS53-219ENST00000576019 PAX6P26367 422 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 GTF2H1P32780 548 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 MS4A2Q01362 244 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 ZNF45Q02386 682 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 CKAP4Q07065 602 aaKnown RBP4.22□□□□□ -1.73
VPS53-219ENST00000576019 MLLT11Q13015 90 aaPredicted RBP4.22□□□□□ -1.73
VPS53-219ENST00000576019 NSDHLQ15738 373 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 GSG1Q2KHT4 349 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 SYT6Q5T7P8 510 aaPredicted RBP4.22□□□□□ -1.73
VPS53-219ENST00000576019 CGB2Q6NT52 195 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 ZNF343Q6P1L6 599 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 DNAJC24Q6P3W2 148 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 PLET1Q6UQ28 207 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 ZNF493Q6ZR52 646 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 WDFY1Q8IWB7 410 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 HS3ST5Q8IZT8 346 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 OR5M1Q8NGP8 315 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 OR51Q1Q8NH59 317 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 LINC01560Q8TB33 94 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 RNF138Q8WVD3 245 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 HBEGFQ99075 208 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 PSMB7Q99436 277 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 ASB7Q9H672 318 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 METTL8Q9H825 291 aaKnown RBP4.22□□□□□ -1.73
VPS53-219ENST00000576019 RRAGDQ9NQL2 400 aaPredicted RBP4.22□□□□□ -1.73
VPS53-219ENST00000576019 ZNF581Q9P0T4 197 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 ATPIF1Q9UII2 106 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 PRELID1Q9Y255 219 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 HEBP2Q9Y5Z4 205 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 DNAJC13O75165 2243 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 CPAMD8Q8IZJ3 1885 aa4.22□□□□□ -1.73
VPS53-219ENST00000576019 SMIM26A0A096LP01 95 aa4.21□□□□□ -1.74
VPS53-219ENST00000576019 OR2AT4A6NND4 320 aa4.21□□□□□ -1.74
VPS53-219ENST00000576019 LRRN3E7EW58 273 aa4.21□□□□□ -1.74
VPS53-219ENST00000576019 TGOLN2O43493 480 aa4.21□□□□□ -1.74
VPS53-219ENST00000576019 HLA-AP01891 365 aaKnown RBP4.21□□□□□ -1.74
VPS53-219ENST00000576019 IFNA6P05013 189 aa4.21□□□□□ -1.74
VPS53-219ENST00000576019 NQO1P15559 274 aaKnown RBP4.21□□□□□ -1.74
VPS53-219ENST00000576019 WARSP23381 471 aaKnown RBP4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms