RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 OR6M1Q8NGM8 313 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 OR10X1Q8NGY0 326 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 RFESDQ8TAC1 157 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 PIFOQ8TCI5 191 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 CCDC107Q8WV48 283 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 TOMM40LQ969M1 308 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 ARL11Q969Q4 196 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 FAM46BQ96A09 425 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 NEDD4LQ96PU5 975 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 BANF2Q9H503 90 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 KCNIP1Q9NZI2 227 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 RCC2Q9P258 522 aaKnown RBP6.52□□□□□ -1.37
VPS53-214ENST00000572607 NPIPB11E5RHQ5 1161 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 J3QR06 171 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 SDCBPO00560 298 aaPredicted RBP6.51□□□□□ -1.37
VPS53-214ENST00000572607 PDCD6O75340 191 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 GLAP06280 429 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 LPLP06858 475 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 UCHL1P09936 223 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 FAM106CPP0CH98 169 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 CGB3P0DN86 165 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 CGB7P0DN87 165 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 VSIG10L2P0DP72 767 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 SRMP19623 302 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 FUT3P21217 361 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 HTR2CP28335 458 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 RAB7AP51149 207 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 EFNB2P52799 333 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 RPS25P62851 125 aaKnown RBP6.51□□□□□ -1.37
VPS53-214ENST00000572607 TPBGQ13641 420 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 INSL4Q14641 139 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 TBCEQ15813 527 aaPredicted RBP6.51□□□□□ -1.37
VPS53-214ENST00000572607 LDLRAD2Q5SZI1 272 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 LCE1DQ5T752 114 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 FAM27D1Q5T7N8 215 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 ZNF497Q6ZNH5 498 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 ZNF367Q7RTV3 350 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 KCNG3Q8TAE7 436 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 SGCDQ92629 289 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 LEAP2Q969E1 77 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 TMEM203Q969S6 136 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 MGLLQ99685 303 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 TMEM59Q9BXS4 323 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 MMP27Q9H306 513 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 LINC00574Q9H8X3 128 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 LIN7BQ9HAP6 207 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 PLGRKTQ9HBL7 147 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 ACOT13Q9NPJ3 140 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 GNG12Q9UBI6 72 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 PSG11Q9UQ72 335 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 SIGLEC9Q9Y336 463 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 NOTCH1P46531 2555 aa6.51□□□□□ -1.37
VPS53-214ENST00000572607 RYR3Q15413 4870 aa6.5□□□□□ -1.37
VPS53-214ENST00000572607 TRAV39A0A0B4J263 110 aa6.5□□□□□ -1.37
VPS53-214ENST00000572607 UBE2QL1A1L167 161 aa6.5□□□□□ -1.37
VPS53-214ENST00000572607 M0QZK8 103 aa6.5□□□□□ -1.37
VPS53-214ENST00000572607 PDCD5O14737 125 aa6.5□□□□□ -1.37
VPS53-214ENST00000572607 MRPS14O60783 128 aaKnown RBP6.5□□□□□ -1.37
VPS53-214ENST00000572607 SC5DO75845 299 aa6.5□□□□□ -1.37
VPS53-214ENST00000572607 OR2F2O95006 317 aa6.5□□□□□ -1.37
VPS53-214ENST00000572607 BPNT1O95861 308 aa6.5□□□□□ -1.37
VPS53-214ENST00000572607 IGHV3-7P01780 117 aa6.5□□□□□ -1.37
VPS53-214ENST00000572607 MT-ND4P03905 459 aa6.5□□□□□ -1.37
VPS53-214ENST00000572607 CSF1P09603 554 aa6.5□□□□□ -1.37
VPS53-214ENST00000572607 CPEP16870 476 aa6.5□□□□□ -1.37
VPS53-214ENST00000572607 JUNBP17275 347 aaPredicted RBP6.5□□□□□ -1.37
VPS53-214ENST00000572607 CALRP27797 417 aaKnown RBP6.5□□□□□ -1.37
VPS53-214ENST00000572607 VDAC2P45880 294 aaPredicted RBP6.5□□□□□ -1.37
VPS53-214ENST00000572607 MAP2K4P45985 399 aa6.5□□□□□ -1.37
VPS53-214ENST00000572607 PSMD7P51665 324 aa6.5□□□□□ -1.37
VPS53-214ENST00000572607 KRTAP10-3P60369 221 aa6.5□□□□□ -1.37
VPS53-214ENST00000572607 GABARAPL2P60520 117 aa6.5□□□□□ -1.37
VPS53-214ENST00000572607 HES1Q14469 280 aa6.5□□□□□ -1.37
VPS53-214ENST00000572607 Q3ZCU0 254 aa6.5□□□□□ -1.37
VPS53-214ENST00000572607 C1orf100Q5SVJ3 147 aa6.5□□□□□ -1.37
VPS53-214ENST00000572607 SYT6Q5T7P8 510 aaPredicted RBP6.5□□□□□ -1.37
VPS53-214ENST00000572607 CCBE1Q6UXH8 406 aaPredicted RBP6.5□□□□□ -1.37
VPS53-214ENST00000572607 LRRTM1Q86UE6 522 aa6.5□□□□□ -1.37
VPS53-214ENST00000572607 LYPD6Q86Y78 171 aa6.5□□□□□ -1.37
VPS53-214ENST00000572607 PRR18Q8N4B5 295 aa6.5□□□□□ -1.37
VPS53-214ENST00000572607 TMEM104Q8NE00 496 aa6.5□□□□□ -1.37
VPS53-214ENST00000572607 OR52M1Q8NGK5 317 aa6.5□□□□□ -1.37
VPS53-214ENST00000572607 OR4K15Q8NH41 348 aa6.5□□□□□ -1.37
VPS53-214ENST00000572607 Q96M66 194 aa6.5□□□□□ -1.37
VPS53-214ENST00000572607 SLC25A33Q9BSK2 321 aa6.5□□□□□ -1.37
VPS53-214ENST00000572607 URM1Q9BTM9 101 aaKnown RBP6.5□□□□□ -1.37
VPS53-214ENST00000572607 ZNF702PQ9H963 129 aa6.5□□□□□ -1.37
VPS53-214ENST00000572607 GFOD1Q9NXC2 390 aa6.5□□□□□ -1.37
VPS53-214ENST00000572607 ZNF581Q9P0T4 197 aa6.5□□□□□ -1.37
VPS53-214ENST00000572607 C12orf77C9JDV5 145 aa6.49□□□□□ -1.37
VPS53-214ENST00000572607 CCRL2O00421 344 aa6.49□□□□□ -1.37
VPS53-214ENST00000572607 HSD17B6O14756 317 aa6.49□□□□□ -1.37
VPS53-214ENST00000572607 SLC22A1O15245 554 aa6.49□□□□□ -1.37
VPS53-214ENST00000572607 GAPDHP04406 335 aaKnown RBP6.49□□□□□ -1.37
VPS53-214ENST00000572607 ARSBP15848 533 aa6.49□□□□□ -1.37
VPS53-214ENST00000572607 TMEM11P17152 192 aa6.49□□□□□ -1.37
VPS53-214ENST00000572607 MYL9P24844 172 aa6.49□□□□□ -1.37
VPS53-214ENST00000572607 CD24P25063 80 aa6.49□□□□□ -1.37
VPS53-214ENST00000572607 RPS27AP62979 156 aaKnown RBP6.49□□□□□ -1.37
VPS53-214ENST00000572607 DEFA6Q01524 100 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms