RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 RRP15Q9Y3B9 282 aaKnown RBP12.05□□□□□ -0.48
VPS39-210ENST00000568357 IGHV3-43A0A0B4J1X8 118 aa12.04□□□□□ -0.48
VPS39-210ENST00000568357 SDCBPO00560 298 aaPredicted RBP12.04□□□□□ -0.48
VPS39-210ENST00000568357 SLC17A2O00624 439 aa12.04□□□□□ -0.48
VPS39-210ENST00000568357 MRPS14O60783 128 aaKnown RBP12.04□□□□□ -0.48
VPS39-210ENST00000568357 BPNT1O95861 308 aa12.04□□□□□ -0.48
VPS39-210ENST00000568357 IGHV3-43DP0DP04 118 aa12.04□□□□□ -0.48
VPS39-210ENST00000568357 CHATP28329 748 aa12.04□□□□□ -0.48
VPS39-210ENST00000568357 BRS3P32247 399 aa12.04□□□□□ -0.48
VPS39-210ENST00000568357 NKAPLQ5M9Q1 402 aa12.04□□□□□ -0.48
VPS39-210ENST00000568357 C5orf24Q7Z6I8 188 aa12.04□□□□□ -0.48
VPS39-210ENST00000568357 Q8N2B8 174 aa12.04□□□□□ -0.48
VPS39-210ENST00000568357 OR52M1Q8NGK5 317 aa12.04□□□□□ -0.48
VPS39-210ENST00000568357 OR2T6Q8NHC8 308 aa12.04□□□□□ -0.48
VPS39-210ENST00000568357 SULT4A1Q9BR01 284 aa12.04□□□□□ -0.48
VPS39-210ENST00000568357 NICN1Q9BSH3 213 aa12.04□□□□□ -0.48
VPS39-210ENST00000568357 FAAP24Q9BTP7 215 aa12.04□□□□□ -0.48
VPS39-210ENST00000568357 TM2D1Q9BX74 207 aa12.04□□□□□ -0.48
VPS39-210ENST00000568357 A0A0A6YYD4 124 aa12.03□□□□□ -0.48
VPS39-210ENST00000568357 OOSP1A8MZH6 123 aa12.03□□□□□ -0.48
VPS39-210ENST00000568357 H3BUI4 141 aa12.03□□□□□ -0.48
VPS39-210ENST00000568357 CA11O75493 328 aa12.03□□□□□ -0.48
VPS39-210ENST00000568357 UBE2UQ5VVX9 321 aa12.03□□□□□ -0.48
VPS39-210ENST00000568357 CD200R1LQ6Q8B3 271 aa12.03□□□□□ -0.48
VPS39-210ENST00000568357 C6orf201Q7Z4U5 140 aa12.03□□□□□ -0.48
VPS39-210ENST00000568357 OR1L1Q8NH94 360 aa12.03□□□□□ -0.48
VPS39-210ENST00000568357 MRPL30Q8TCC3 161 aaKnown RBP12.03□□□□□ -0.48
VPS39-210ENST00000568357 RPEQ96AT9 228 aa12.03□□□□□ -0.48
VPS39-210ENST00000568357 TMEM59Q9BXS4 323 aa12.03□□□□□ -0.48
VPS39-210ENST00000568357 YTHDF1Q9BYJ9 559 aaKnown RBP12.03□□□□□ -0.48
VPS39-210ENST00000568357 PLGRKTQ9HBL7 147 aa12.03□□□□□ -0.48
VPS39-210ENST00000568357 SERTAD4Q9NUC0 356 aa12.03□□□□□ -0.48
VPS39-210ENST00000568357 NDUFB11Q9NX14 153 aa12.03□□□□□ -0.48
VPS39-210ENST00000568357 GFOD1Q9NXC2 390 aa12.03□□□□□ -0.48
VPS39-210ENST00000568357 LRRC42Q9Y546 428 aa12.03□□□□□ -0.48
VPS39-210ENST00000568357 VWFP04275 2813 aa12.03□□□□□ -0.48
VPS39-210ENST00000568357 SHISA3A0PJX4 238 aa12.02□□□□□ -0.49
VPS39-210ENST00000568357 FAM90A9PA6NNJ1 464 aa12.02□□□□□ -0.49
VPS39-210ENST00000568357 HBZP02008 142 aa12.02□□□□□ -0.49
VPS39-210ENST00000568357 ARSBP15848 533 aa12.02□□□□□ -0.49
VPS39-210ENST00000568357 ZNF134P52741 427 aa12.02□□□□□ -0.49
VPS39-210ENST00000568357 CLDN12P56749 244 aa12.02□□□□□ -0.49
VPS39-210ENST00000568357 MADCAM1Q13477 382 aa12.02□□□□□ -0.49
VPS39-210ENST00000568357 C6orf183Q5T699 404 aa12.02□□□□□ -0.49
VPS39-210ENST00000568357 CCDC144NLQ6NUI1 221 aa12.02□□□□□ -0.49
VPS39-210ENST00000568357 PRR18Q8N4B5 295 aa12.02□□□□□ -0.49
VPS39-210ENST00000568357 SVOPQ8N4V2 548 aa12.02□□□□□ -0.49
VPS39-210ENST00000568357 OR10X1Q8NGY0 326 aa12.02□□□□□ -0.49
VPS39-210ENST00000568357 TOMM40LQ969M1 308 aa12.02□□□□□ -0.49
VPS39-210ENST00000568357 NEDD4LQ96PU5 975 aa12.02□□□□□ -0.49
VPS39-210ENST00000568357 PRSS22Q9GZN4 317 aa12.02□□□□□ -0.49
VPS39-210ENST00000568357 LPAR5Q9H1C0 372 aa12.02□□□□□ -0.49
VPS39-210ENST00000568357 TAF9BQ9HBM6 251 aa12.02□□□□□ -0.49
VPS39-210ENST00000568357 MBNL3Q9NUK0 354 aaKnown RBP12.02□□□□□ -0.49
VPS39-210ENST00000568357 AMMECR1Q9Y4X0 333 aaPredicted RBP12.02□□□□□ -0.49
VPS39-210ENST00000568357 V9GY05 133 aa12.02□□□□□ -0.49
VPS39-210ENST00000568357 TRDV1A0A1B0GX56 115 aa12.01□□□□□ -0.49
VPS39-210ENST00000568357 A0A1W2PPI3 338 aa12.01□□□□□ -0.49
VPS39-210ENST00000568357 TIMM23O14925 209 aa12.01□□□□□ -0.49
VPS39-210ENST00000568357 SPINT2O43291 252 aa12.01□□□□□ -0.49
VPS39-210ENST00000568357 AMY1AP04745 511 aa12.01□□□□□ -0.49
VPS39-210ENST00000568357 AMY2AP04746 511 aa12.01□□□□□ -0.49
VPS39-210ENST00000568357 VSIG10L2P0DP72 767 aa12.01□□□□□ -0.49
VPS39-210ENST00000568357 BLVRBP30043 206 aaPredicted RBP12.01□□□□□ -0.49
VPS39-210ENST00000568357 MNDAP41218 407 aa12.01□□□□□ -0.49
VPS39-210ENST00000568357 ARHGDIBP52566 201 aa12.01□□□□□ -0.49
VPS39-210ENST00000568357 RAB11BQ15907 218 aa12.01□□□□□ -0.49
VPS39-210ENST00000568357 C2orf76Q3KRA6 126 aa12.01□□□□□ -0.49
VPS39-210ENST00000568357 C11orf88Q6PI97 169 aa12.01□□□□□ -0.49
VPS39-210ENST00000568357 OR2W3Q7Z3T1 314 aa12.01□□□□□ -0.49
VPS39-210ENST00000568357 FAM89BQ8N5H3 189 aa12.01□□□□□ -0.49
VPS39-210ENST00000568357 LINC00311Q8N616 119 aa12.01□□□□□ -0.49
VPS39-210ENST00000568357 DRAM1Q8N682 238 aa12.01□□□□□ -0.49
VPS39-210ENST00000568357 KLHDC1Q8N7A1 406 aa12.01□□□□□ -0.49
VPS39-210ENST00000568357 C8orf31Q8N9H6 132 aa12.01□□□□□ -0.49
VPS39-210ENST00000568357 ZNF439Q8NDP4 499 aa12.01□□□□□ -0.49
VPS39-210ENST00000568357 OR51D1Q8NGF3 324 aa12.01□□□□□ -0.49
VPS39-210ENST00000568357 CAPSLQ8WWF8 208 aa12.01□□□□□ -0.49
VPS39-210ENST00000568357 CFHR4Q92496 578 aa12.01□□□□□ -0.49
VPS39-210ENST00000568357 FAM3DQ96BQ1 224 aa12.01□□□□□ -0.49
VPS39-210ENST00000568357 RBM14Q96PK6 669 aaKnown RBP12.01□□□□□ -0.49
VPS39-210ENST00000568357 LIN7BQ9HAP6 207 aa12.01□□□□□ -0.49
VPS39-210ENST00000568357 TRAV1-2A0A0B4J238 106 aa12□□□□□ -0.49
VPS39-210ENST00000568357 CCRL2O00421 344 aa12□□□□□ -0.49
VPS39-210ENST00000568357 LDLRAD4O15165 306 aa12□□□□□ -0.49
VPS39-210ENST00000568357 SLC31A2O15432 143 aa12□□□□□ -0.49
VPS39-210ENST00000568357 SOCS1O15524 211 aa12□□□□□ -0.49
VPS39-210ENST00000568357 OR2F2O95006 317 aa12□□□□□ -0.49
VPS39-210ENST00000568357 FAM106CPP0CH98 169 aa12□□□□□ -0.49
VPS39-210ENST00000568357 PSMD7P51665 324 aa12□□□□□ -0.49
VPS39-210ENST00000568357 OR10A3P58181 314 aa12□□□□□ -0.49
VPS39-210ENST00000568357 PLA2G7Q13093 441 aa12□□□□□ -0.49
VPS39-210ENST00000568357 HERPUD1Q15011 391 aa12□□□□□ -0.49
VPS39-210ENST00000568357 CT45A1Q5HYN5 189 aa12□□□□□ -0.49
VPS39-210ENST00000568357 HES5Q5TA89 166 aa12□□□□□ -0.49
VPS39-210ENST00000568357 Q6ZPA2 131 aa12□□□□□ -0.49
VPS39-210ENST00000568357 THNSL2Q86YJ6 484 aa12□□□□□ -0.49
VPS39-210ENST00000568357 C11orf44Q8N8P7 122 aa12□□□□□ -0.49
VPS39-210ENST00000568357 DTX3Q8N9I9 347 aa12□□□□□ -0.49
VPS39-210ENST00000568357 OR10V1Q8NGI7 309 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms