RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 SFXN3Q9BWM7 321 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 SEC11CQ9BY50 192 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 TOLLIPQ9H0E2 274 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 RAB9BQ9NP90 201 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 ZNF71Q9NQZ8 489 aaPredicted RBP5.62□□□□□ -1.51
USP28-206ENST00000538224 LYRM2Q9NU23 88 aaPredicted RBP5.62□□□□□ -1.51
USP28-206ENST00000538224 CARHSP1Q9Y2V2 147 aaKnown RBP5.62□□□□□ -1.51
USP28-206ENST00000538224 RBM7Q9Y580 266 aaKnown RBP5.62□□□□□ -1.51
USP28-206ENST00000538224 CACNA1HO95180 2353 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 IGHV1-18A0A0C4DH31 117 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 A0A1W2PR80 420 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 NKX2-6A6NCS4 301 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 A6NLC8 198 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 C1QTNF9BB2RNN3 333 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 UMAD1C9J7I0 102 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 FAM90A26D6RGX4 464 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 MKRN2OSH3BPM6 223 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 LGALS8O00214 317 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 CDIPTO14735 213 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 MLNRO43193 412 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 KCNAB3O43448 404 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 ADAM20O43506 726 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 PGLYRP1O75594 196 aaPredicted RBP5.61□□□□□ -1.51
USP28-206ENST00000538224 DFFBO76075 338 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 ZNF205O95201 554 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 SNAPINO95295 136 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 CGAP01215 116 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 GRPP07492 148 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 FAM157CP0CG43 387 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 SPP1P10451 314 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 RCC1P18754 421 aaPredicted RBP5.61□□□□□ -1.51
USP28-206ENST00000538224 TIMP3P35625 211 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 MPV17P39210 176 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 ERVS71-1P61550 626 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 RPL23AP62750 156 aaKnown RBP5.61□□□□□ -1.51
USP28-206ENST00000538224 EWSR1Q01844 656 aaKnown RBP eCLIP5.61□□□□□ -1.51
USP28-206ENST00000538224 CATR1Q13166 79 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 IGFBP7Q16270 282 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 FREM2Q5SZK8 3169 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 C10orf91Q5T1B1 145 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 FAM180AQ6UWF9 173 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 ACP7Q6ZNF0 438 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 Q6ZRG5 221 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 STX12Q86Y82 276 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 FAM219AQ8IW50 185 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 PRSS33Q8NF86 280 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 NINJ1Q92982 152 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 GALMQ96C23 342 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 STARD4Q96DR4 205 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 MUCL1Q96DR8 90 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 GNPNAT1Q96EK6 184 aaPredicted RBP5.61□□□□□ -1.51
USP28-206ENST00000538224 LRRC46Q96FV0 321 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 HS3ST6Q96QI5 342 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 TAAR6Q96RI8 345 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 RAB40CQ96S21 281 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 PBDC1Q9BVG4 233 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 C1QTNF6Q9BXI9 259 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 NKX6-2Q9C056 277 aaPredicted RBP5.61□□□□□ -1.51
USP28-206ENST00000538224 SMDT1Q9H4I9 107 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 C11orf1Q9H5F2 150 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 TREM1Q9NP99 234 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 CCL28Q9NRJ3 127 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 DKK4Q9UBT3 224 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 ERRFI1Q9UJM3 462 aaPredicted RBP5.61□□□□□ -1.51
USP28-206ENST00000538224 TINAGQ9UJW2 476 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 KCNS2Q9ULS6 477 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 LAMP3Q9UQV4 416 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 SLC25A15Q9Y619 301 aa5.61□□□□□ -1.51
USP28-206ENST00000538224 SHANK1Q9Y566 2161 aa5.6□□□□□ -1.51
USP28-206ENST00000538224 BTBD17A6NE02 478 aa5.6□□□□□ -1.51
USP28-206ENST00000538224 F8W036 122 aa5.6□□□□□ -1.51
USP28-206ENST00000538224 TM4SF5O14894 197 aa5.6□□□□□ -1.51
USP28-206ENST00000538224 SSSCA1O60232 199 aa5.6□□□□□ -1.51
USP28-206ENST00000538224 SCO1O75880 301 aa5.6□□□□□ -1.51
USP28-206ENST00000538224 AGFG2O95081 481 aa5.6□□□□□ -1.51
USP28-206ENST00000538224 LY86O95711 162 aa5.6□□□□□ -1.51
USP28-206ENST00000538224 PTBP3O95758 552 aaKnown RBP5.6□□□□□ -1.51
USP28-206ENST00000538224 TSPAN15O95858 294 aa5.6□□□□□ -1.51
USP28-206ENST00000538224 CRYAAP02489 173 aa5.6□□□□□ -1.51
USP28-206ENST00000538224 HEXAP06865 529 aa5.6□□□□□ -1.51
USP28-206ENST00000538224 DANCRP0C864 163 aa5.6□□□□□ -1.51
USP28-206ENST00000538224 IL2RGP31785 369 aa5.6□□□□□ -1.51
USP28-206ENST00000538224 CAMLGP49069 296 aa5.6□□□□□ -1.51
USP28-206ENST00000538224 AKR1C2P52895 323 aa5.6□□□□□ -1.51
USP28-206ENST00000538224 DVL1P1P54792 670 aaPredicted RBP5.6□□□□□ -1.51
USP28-206ENST00000538224 TAS2R30P59541 319 aa5.6□□□□□ -1.51
USP28-206ENST00000538224 SELENOVP59797 346 aa5.6□□□□□ -1.51
USP28-206ENST00000538224 RAB2AP61019 212 aa5.6□□□□□ -1.51
USP28-206ENST00000538224 SSTP61278 116 aa5.6□□□□□ -1.51
USP28-206ENST00000538224 DEFA5Q01523 94 aa5.6□□□□□ -1.51
USP28-206ENST00000538224 ID3Q02535 119 aa5.6□□□□□ -1.51
USP28-206ENST00000538224 PEA15Q15121 130 aa5.6□□□□□ -1.51
USP28-206ENST00000538224 TESK1Q15569 626 aa5.6□□□□□ -1.51
USP28-206ENST00000538224 MST1LQ2TV78 715 aa5.6□□□□□ -1.51
USP28-206ENST00000538224 BTNL8Q6UX41 500 aa5.6□□□□□ -1.51
USP28-206ENST00000538224 WDR82Q6UXN9 313 aa5.6□□□□□ -1.51
USP28-206ENST00000538224 DPPA3Q6W0C5 159 aa5.6□□□□□ -1.51
USP28-206ENST00000538224 C20orf204Q6ZNR8 217 aa5.6□□□□□ -1.51
USP28-206ENST00000538224 ZNF645Q8N7E2 425 aa5.6□□□□□ -1.51
USP28-206ENST00000538224 ZNF610Q8N9Z0 462 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms